Conservation of cofitness between CSW01_05630 and CSW01_00650 in Vibrio cholerae E7946 ATCC 55056

92 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_05630 replication-associated recombination protein A 1.0 CSW01_00650 tyrosine recombinase XerC 0.70 14
Dickeya dianthicola ME23 0.73 DZA65_RS09930 replication-associated recombination protein A 0.56 DZA65_RS21090 tyrosine recombinase XerC low > 75
Dickeya dianthicola 67-19 0.73 HGI48_RS09620 replication-associated recombination protein A 0.56 HGI48_RS20045 tyrosine recombinase XerC low > 71
Pantoea sp. MT58 0.73 IAI47_12900 replication-associated recombination protein A 0.53 IAI47_18400 tyrosine recombinase XerC low > 76
Klebsiella pneumoniae MRSN742743 0.73 GJGHJB_03321 rarA replication-associated recombination protein RarA 0.53 GJGHJB_04826 xerC tyrosine recombinase XerC — —
Escherichia fergusonii Becca 0.73 EFB2_03169 Replication-associated recombination protein A 0.54 EFB2_04826 Tyrosine recombinase XerC low > 86
Escherichia coli BL21 0.73 ECD_00896 recombination intermediate processing DNA-dependent ATPase 0.55 ECD_03687 site-specific tyrosine recombinase low > 61
Klebsiella michiganensis M5al 0.73 BWI76_RS09670 recombination factor protein RarA 0.55 BWI76_RS01210 tyrosine recombinase XerC low > 92
Escherichia coli Nissle 1917 0.73 ECOLIN_RS04745 replication-associated recombination protein RarA 0.54 ECOLIN_RS21875 tyrosine recombinase XerC low > 55
Klebsiella pneumoniae MKP103 0.73 KDGMDA_17905 replication-associated recombination protein RarA 0.53 KDGMDA_09700 tyrosine recombinase XerC low > 94
Escherichia coli HS(pFamp)R (ATCC 700891) 0.73 OHPLBJKB_02776 Replication-associated recombination protein A 0.54 OHPLBJKB_04239 Tyrosine recombinase XerC low > 74
Escherichia coli BW25113 0.73 b0892 ycaJ recombination protein (NCBI) 0.54 b3811 xerC site-specific tyrosine recombinase XerC (NCBI) low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.73 GFF4896 FIG065221: Holliday junction DNA helicase 0.55 GFF239 Tyrosine recombinase XerC — —
Escherichia coli ECRC101 0.73 MCAODC_24950 rarA replication-associated recombination protein RarA 0.55 MCAODC_04925 xerC tyrosine recombinase XerC — —
Pantoea agglomerans CFBP13505 P0401 0.73 PagCFBP13516_RS12985 replication-associated recombination protein A 0.53 PagCFBP13516_RS18660 xerC tyrosine recombinase XerC — —
Dickeya dadantii 3937 0.73 DDA3937_RS09605 replication-associated recombination protein A 0.56 DDA3937_RS19890 tyrosine recombinase XerC — —
Escherichia coli ECOR38 0.73 HEPCGN_22950 rarA replication-associated recombination protein RarA 0.54 HEPCGN_13125 xerC tyrosine recombinase XerC low > 88
Escherichia coli ECRC100 0.73 OKFHMN_05560 rarA replication-associated recombination protein RarA 0.55 OKFHMN_14420 xerC tyrosine recombinase XerC low > 79
Escherichia coli ECRC102 0.73 NIAGMN_03280 rarA replication-associated recombination protein RarA 0.55 NIAGMN_12175 xerC tyrosine recombinase XerC — —
Escherichia coli ECRC99 0.73 KEDOAH_22175 rarA replication-associated recombination protein RarA 0.55 KEDOAH_13730 xerC tyrosine recombinase XerC — —
Escherichia coli ECRC98 0.73 JDDGAC_09370 rarA replication-associated recombination protein RarA 0.55 JDDGAC_18045 xerC tyrosine recombinase XerC — —
Escherichia coli ECOR27 0.72 NOLOHH_22130 rarA replication-associated recombination protein RarA 0.54 NOLOHH_06550 xerC tyrosine recombinase XerC low > 75
Escherichia coli ECRC62 0.72 BNILDI_20385 rarA replication-associated recombination protein RarA 0.54 BNILDI_04985 xerC tyrosine recombinase XerC low > 75
Enterobacter asburiae PDN3 0.72 EX28DRAFT_2040 ATPase related to the helicase subunit of the Holliday junction resolvase 0.54 EX28DRAFT_4480 tyrosine recombinase XerC — —
Enterobacter sp. TBS_079 0.72 MPMX20_01554 Replication-associated recombination protein A 0.52 MPMX20_04465 Tyrosine recombinase XerC low > 85
Pectobacterium carotovorum WPP14 0.72 HER17_RS12345 replication-associated recombination protein A 0.54 HER17_RS01350 tyrosine recombinase XerC low > 75
Rahnella sp. WP5 0.71 EX31_RS18515 replication-associated recombination protein A 0.56 EX31_RS15165 tyrosine recombinase XerC low > 89
Erwinia amylovora T8 0.71 OLJFJH_16170 recombination factor protein RarA 0.54 OLJFJH_06415 tyrosine recombinase XerC low > 58
Erwinia tracheiphila HP pepo 2.2 0.71 IJEDHG_20230 Replication-associated recombination protein A 0.53 IJEDHG_08780 xerC tyrosine recombinase XerC — —
Serratia liquefaciens MT49 0.70 IAI46_08570 replication-associated recombination protein A 0.55 IAI46_00725 tyrosine recombinase XerC low > 87
Erwinia tracheiphila SCR3 0.69 LU632_RS09755 replication-associated recombination protein A 0.53 LU632_RS24135 xerC tyrosine recombinase XerC — —
Shewanella loihica PV-4 0.64 Shew_2022 recombination factor protein RarA (RefSeq) 0.44 Shew_0325 tyrosine recombinase XerC (RefSeq) low > 60
Shewanella sp. ANA-3 0.63 Shewana3_2052 recombination factor protein RarA (RefSeq) 0.47 Shewana3_0393 tyrosine recombinase XerC (RefSeq) low > 73
Shewanella oneidensis MR-1 0.63 SO2308 ATPase, AAA family (NCBI ptt file) 0.47 SO4306 xerC integrase/recombinase XerC (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.61 Sama_1774 recombination factor protein RarA (RefSeq) 0.47 Sama_3247 integrase/recombinase XerC (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.59 MIT1002_02178 Replication-associated recombination protein A 0.45 MIT1002_00157 Tyrosine recombinase XerC low > 70
Marinobacter adhaerens HP15 0.57 HP15_1817 recombination factor protein RarA 0.44 HP15_250 site-specific tyrosine recombinase XerC low > 73
Pseudomonas putida KT2440 0.57 PP_4002 DNA-dependent ATPase required for recombination 0.39 PP_5230 Tyrosine recombinase XerC low > 96
Pseudomonas sp. BP01 0.57 JOY50_RS06525 replication-associated recombination protein A 0.39 JOY50_RS22610 xerC tyrosine recombinase XerC low > 84
Pseudomonas sp. SVBP6 0.57 COO64_RS24170 replication-associated recombination protein A 0.39 COO64_RS01270 xerC tyrosine recombinase XerC 0.40 78
Pseudomonas fluorescens FW300-N2C3 0.57 AO356_22185 recombination factor protein RarA 0.38 AO356_12725 recombinase XerC low > 104
Pseudomonas syringae pv. syringae B728a ΔmexB 0.57 Psyr_3177 Recombination protein MgsA 0.39 Psyr_0185 tyrosine recombinase XerC subunit low > 86
Pseudomonas syringae pv. syringae B728a 0.57 Psyr_3177 Recombination protein MgsA 0.39 Psyr_0185 tyrosine recombinase XerC subunit low > 86
Pseudomonas sp. RS175 0.56 PFR28_02606 Replication-associated recombination protein A 0.38 PFR28_04378 Tyrosine recombinase XerC low > 88
Pseudomonas fluorescens FW300-N2E2 0.56 Pf6N2E2_299 FIG065221: Holliday junction DNA helicase 0.38 Pf6N2E2_4416 Tyrosine recombinase XerC low > 103
Pseudomonas sp. S08-1 0.56 OH686_00270 Replication-associated recombination protein RarA 0.38 OH686_13785 tyrosine recombinase XerC low > 80
Pseudomonas fluorescens FW300-N1B4 0.56 Pf1N1B4_4062 FIG065221: Holliday junction DNA helicase 0.38 Pf1N1B4_2171 Tyrosine recombinase XerC low > 87
Pseudomonas sp. DMC3 0.56 GFF1532 Replication-associated recombination protein A 0.38 GFF370 Tyrosine recombinase XerC low > 89
Pseudomonas segetis P6 0.55 ACVTMO_RS12580 replication-associated recombination protein A 0.40 ACVTMO_RS22525 xerC tyrosine recombinase XerC — —
Pseudomonas aeruginosa PUPa3 0.55 NPBIFN_02446 Replication-associated recombination protein A 0.40 NPBIFN_05607 xerC tyrosine recombinase XerC low > 101
Pseudomonas aeruginosa PA14 0.55 IKLFDK_13115 recombination factor protein RarA 0.40 IKLFDK_27050 tyrosine recombinase XerC low > 98
Pseudomonas aeruginosa MRSN321 0.55 PFGADD_02407 Replication-associated recombination protein A 0.40 PFGADD_05531 xerC tyrosine recombinase XerC low > 99
Pseudomonas fluorescens GW456-L13 0.55 PfGW456L13_2653 FIG065221: Holliday junction DNA helicase 0.38 PfGW456L13_842 Tyrosine recombinase XerC low > 87
Pseudomonas fluorescens FW300-N2E3 0.55 AO353_27640 recombination factor protein RarA 0.38 AO353_09050 recombinase XerC low > 101
Pseudomonas fluorescens SBW25-INTG 0.55 PFLU_RS18520 replication-associated recombination protein A 0.34 PFLU_RS29280 tyrosine recombinase XerC 0.15 104
Pseudomonas lactucae CFBP13502 0.55 GEMAOFIL_03623 Replication-associated recombination protein A 0.37 GEMAOFIL_05657 Tyrosine recombinase XerC low > 96
Pseudomonas fluorescens SBW25 0.55 PFLU_RS18520 replication-associated recombination protein A 0.34 PFLU_RS29280 tyrosine recombinase XerC low > 109
Pseudomonas protegens RBAN4 0.55 FABNJH_20050 Replication-associated recombination protein A 0.39 FABNJH_30340 xerC tyrosine recombinase XerC — —
Kangiella aquimarina DSM 16071 0.55 B158DRAFT_1819 ATPase related to the helicase subunit of the Holliday junction resolvase 0.45 B158DRAFT_0244 tyrosine recombinase XerC subunit 0.47 8
Pseudomonas stutzeri RCH2 0.55 Psest_2034 ATPase related to the helicase subunit of the Holliday junction resolvase 0.40 Psest_3767 tyrosine recombinase XerC 0.14 44
Pseudomonas simiae WCS417 0.55 PS417_16480 recombination factor protein RarA 0.34 PS417_27595 recombinase XerC low > 88
Pseudomonas orientalis W4I3 0.55 QF045_RS18235 replication-associated recombination protein A 0.37 QF045_RS01960 tyrosine recombinase XerC low > 93
Pseudomonas sp. FW215-L2 0.55 GFF2717 Replication-associated recombination protein A 0.36 GFF4511 Tyrosine recombinase XerC low > 111
Paraburkholderia sabiae LMG 24235 0.50 QEN71_RS03415 replication-associated recombination protein A 0.35 QEN71_RS00355 tyrosine recombinase XerC — —
Ralstonia sp. UNC404CL21Col 0.50 ABZR87_RS16030 replication-associated recombination protein A 0.34 ABZR87_RS05065 tyrosine recombinase XerC low > 80
Ralstonia solanacearum PSI07 0.49 RPSI07_RS13205 replication-associated recombination protein A 0.35 RPSI07_RS23690 tyrosine recombinase XerC low > 81
Methylophilus sp. DMC18 0.49 GFF351 Replication-associated recombination protein A 0.40 GFF1535 Tyrosine recombinase XerC low > 43
Paraburkholderia graminis OAS925 0.49 ABIE53_001292 putative ATPase 0.33 ABIE53_000426 integrase/recombinase XerC — —
Ralstonia solanacearum UW163 0.49 UW163_RS09525 replication-associated recombination protein A 0.33 UW163_RS03905 tyrosine recombinase XerC — —
Ralstonia solanacearum IBSBF1503 0.49 RALBFv3_RS04145 replication-associated recombination protein A 0.33 RALBFv3_RS09675 tyrosine recombinase XerC low > 76
Burkholderia phytofirmans PsJN 0.49 BPHYT_RS05100 ATPase AAA 0.36 BPHYT_RS01655 tyrosine recombinase XerC — —
Cupriavidus basilensis FW507-4G11 0.49 RR42_RS04355 recombination factor protein RarA 0.31 RR42_RS00615 recombinase XerC low > 128
Rhodanobacter sp000427505 FW510-R12 0.49 LRK53_RS11700 replication-associated recombination protein A 0.37 LRK53_RS02315 tyrosine recombinase XerC low > 59
Rhodanobacter denitrificans FW104-10B01 0.49 LRK54_RS17320 replication-associated recombination protein A 0.37 LRK54_RS08535 tyrosine recombinase XerC low > 59
Rhodanobacter sp. FW510-T8 0.49 OKGIIK_07580 rarA recombination factor protein RarA 0.37 OKGIIK_15325 xerC tyrosine recombinase XerC low > 53
Rhodanobacter denitrificans MT42 0.48 LRK55_RS17545 replication-associated recombination protein A 0.38 LRK55_RS08300 tyrosine recombinase XerC low > 63
Paraburkholderia bryophila 376MFSha3.1 0.48 H281DRAFT_00180 Recombination protein MgsA 0.34 H281DRAFT_02202 integrase/recombinase XerC — —
Ralstonia solanacearum GMI1000 0.48 RS_RS11735 replication-associated recombination protein A 0.34 RS_RS00260 Tyrosine recombinase XerC 1 low > 80
Xanthomonas campestris pv. campestris strain 8004 0.48 Xcc-8004.2744.1 FIG065221: Holliday junction DNA helicase 0.40 Xcc-8004.847.1 Site-specific tyrosine recombinase — —
Variovorax sp. OAS795 0.48 ABID97_RS07835 replication-associated recombination protein A 0.33 ABID97_RS06150 tyrosine recombinase XerC low > 91
Dyella japonica UNC79MFTsu3.2 0.48 ABZR86_RS01825 replication-associated recombination protein A 0.37 ABZR86_RS15025 tyrosine recombinase XerC 0.67 37
Dechlorosoma suillum PS 0.48 Dsui_1694 AAA ATPase 0.37 Dsui_0651 tyrosine recombinase XerC low > 51
Collimonas humicola GW821-FHT01A05 0.48 MPMX01_01746 Replication-associated recombination protein A 0.32 MPMX01_04647 Tyrosine recombinase XerC low > 87
Herbaspirillum seropedicae SmR1 0.47 HSERO_RS09515 ATPase AAA 0.35 HSERO_RS21475 recombinase XerC low > 78
Variovorax sp. SCN45 0.47 GFF6034 Replication-associated recombination protein RarA 0.33 GFF4490 Site-specific tyrosine recombinase XerC low > 127
Acidovorax sp. GW101-3H11 0.47 Ac3H11_1696 FIG065221: Holliday junction DNA helicase 0.31 Ac3H11_1995 Tyrosine recombinase XerC low > 79
Castellaniella sp019104865 MT123 0.47 ABCV34_RS07220 replication-associated recombination protein A 0.34 ABCV34_RS13455 tyrosine recombinase XerC low > 48
Lysobacter sp. OAE881 0.45 ABIE51_RS11445 replication-associated recombination protein A 0.38 ABIE51_RS03035 tyrosine recombinase XerC 0.71 7
Bacteroides ovatus ATCC 8483 0.39 BACOVA_03971 ATPase, AAA family 0.29 BACOVA_01050 site-specific recombinase, phage integrase family/ribosomal subunit interface protein low > 96
Phocaeicola vulgatus CL09T03C04 0.39 HMPREF1058_RS06440 replication-associated recombination protein A 0.25 HMPREF1058_RS09445 tyrosine-type recombinase/integrase low > 67
Hydrogenophaga sp. GW460-11-11-14-LB1 0.38 GFF777 FIG065221: Holliday junction DNA helicase 0.31 GFF547 Tyrosine recombinase XerC low > 92
Bacteroides thetaiotaomicron VPI-5482 0.38 BT1205 putative ATPase, AAA family (NCBI ptt file) 0.29 BT2742 integrase, site-specific recombinase (NCBI ptt file) low > 81
Bacteroides stercoris CC31F 0.38 HMPREF1181_RS16975 replication-associated recombination protein A 0.27 HMPREF1181_RS00625 tyrosine recombinase XerC low > 56

Not shown: 30 genomes with orthologs for CSW01_05630 only; 0 genomes with orthologs for CSW01_00650 only