Conservation of cofitness between CSW01_05375 and CSW01_00650 in Vibrio cholerae E7946 ATCC 55056

89 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_05375 recombination protein RecR 1.0 CSW01_00650 tyrosine recombinase XerC 0.44 19
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.81 GFF4390 Recombination protein RecR 0.55 GFF239 Tyrosine recombinase XerC — —
Escherichia coli Nissle 1917 0.81 ECOLIN_RS02805 recombination mediator RecR 0.54 ECOLIN_RS21875 tyrosine recombinase XerC — —
Escherichia fergusonii Becca 0.81 EFB2_03586 Recombination protein RecR 0.54 EFB2_04826 Tyrosine recombinase XerC low > 86
Escherichia coli ECOR38 0.81 HEPCGN_06770 recR recombination mediator RecR 0.54 HEPCGN_13125 xerC tyrosine recombinase XerC 0.65 9
Escherichia coli ECRC102 0.81 NIAGMN_06210 recR recombination mediator RecR 0.55 NIAGMN_12175 xerC tyrosine recombinase XerC — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.81 OHPLBJKB_03202 Recombination protein RecR 0.54 OHPLBJKB_04239 Tyrosine recombinase XerC low > 74
Escherichia coli ECRC62 0.81 BNILDI_22505 recR recombination mediator RecR 0.54 BNILDI_04985 xerC tyrosine recombinase XerC low > 75
Escherichia coli ECRC98 0.81 JDDGAC_11805 recR recombination mediator RecR 0.55 JDDGAC_18045 xerC tyrosine recombinase XerC — —
Escherichia coli BL21 0.81 ECD_00423 gap repair protein 0.55 ECD_03687 site-specific tyrosine recombinase 0.53 23
Escherichia coli BW25113 0.81 b0472 recR recombination protein RecR (NCBI) 0.54 b3811 xerC site-specific tyrosine recombinase XerC (NCBI) low > 76
Enterobacter sp. TBS_079 0.81 MPMX20_01074 Recombination protein RecR 0.52 MPMX20_04465 Tyrosine recombinase XerC 0.29 32
Escherichia coli ECOR27 0.81 NOLOHH_01085 recR recombination mediator RecR 0.54 NOLOHH_06550 xerC tyrosine recombinase XerC 0.31 49
Escherichia coli ECRC101 0.81 MCAODC_27380 recR recombination mediator RecR 0.55 MCAODC_04925 xerC tyrosine recombinase XerC — —
Escherichia coli ECRC100 0.81 OKFHMN_08155 recR recombination mediator RecR 0.55 OKFHMN_14420 xerC tyrosine recombinase XerC low > 79
Enterobacter asburiae PDN3 0.81 EX28DRAFT_2485 DNA replication and repair protein RecR 0.54 EX28DRAFT_4480 tyrosine recombinase XerC — —
Escherichia coli ECRC99 0.81 KEDOAH_19810 recR recombination mediator RecR 0.55 KEDOAH_13730 xerC tyrosine recombinase XerC — —
Klebsiella michiganensis M5al 0.81 BWI76_RS06830 recombination protein RecR 0.55 BWI76_RS01210 tyrosine recombinase XerC 0.38 2
Klebsiella pneumoniae MRSN742743 0.81 GJGHJB_03813 recR recombination mediator RecR 0.53 GJGHJB_04826 xerC tyrosine recombinase XerC — —
Klebsiella pneumoniae MKP103 0.81 KDGMDA_14890 recombination mediator RecR 0.53 KDGMDA_09700 tyrosine recombinase XerC 0.32 88
Dickeya dadantii 3937 0.80 DDA3937_RS05790 recombination protein RecR 0.56 DDA3937_RS19890 tyrosine recombinase XerC — —
Serratia liquefaciens MT49 0.80 IAI46_05240 recombination protein RecR 0.55 IAI46_00725 tyrosine recombinase XerC low > 87
Dickeya dianthicola ME23 0.79 DZA65_RS06165 recombination protein RecR 0.56 DZA65_RS21090 tyrosine recombinase XerC low > 75
Pectobacterium carotovorum WPP14 0.79 HER17_RS15695 recombination mediator RecR 0.54 HER17_RS01350 tyrosine recombinase XerC 0.71 6
Erwinia amylovora T8 0.79 OLJFJH_17805 recombination mediator RecR 0.54 OLJFJH_06415 tyrosine recombinase XerC low > 58
Dickeya dianthicola 67-19 0.79 HGI48_RS05840 recombination protein RecR 0.56 HGI48_RS20045 tyrosine recombinase XerC — —
Pantoea agglomerans CFBP13505 P0401 0.78 PagCFBP13516_RS14715 recR recombination mediator RecR 0.53 PagCFBP13516_RS18660 xerC tyrosine recombinase XerC — —
Pantoea sp. MT58 0.78 IAI47_14465 recombination protein RecR 0.53 IAI47_18400 tyrosine recombinase XerC low > 76
Rahnella sp. WP5 0.78 EX31_RS22525 recombination protein RecR 0.56 EX31_RS15165 tyrosine recombinase XerC low > 89
Erwinia tracheiphila HP pepo 2.2 0.77 IJEDHG_16645 recR recombination mediator RecR 0.53 IJEDHG_08780 xerC tyrosine recombinase XerC — —
Erwinia tracheiphila SCR3 0.77 LU632_RS18105 recR recombination mediator RecR 0.53 LU632_RS24135 xerC tyrosine recombinase XerC — —
Shewanella sp. ANA-3 0.67 Shewana3_2444 recR recombination protein RecR (RefSeq) 0.47 Shewana3_0393 tyrosine recombinase XerC (RefSeq) low > 73
Shewanella oneidensis MR-1 0.66 SO2015 recR recombination protein RecR (NCBI ptt file) 0.47 SO4306 xerC integrase/recombinase XerC (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.65 Shew_2233 recombination protein RecR (RefSeq) 0.44 Shew_0325 tyrosine recombinase XerC (RefSeq) low > 60
Alteromonas macleodii MIT1002 0.65 MIT1002_02649 Recombination protein RecR 0.45 MIT1002_00157 Tyrosine recombinase XerC low > 70
Shewanella amazonensis SB2B 0.64 Sama_1312 recR recombination protein RecR (RefSeq) 0.47 Sama_3247 integrase/recombinase XerC (RefSeq) low > 62
Pseudomonas putida KT2440 0.59 PP_4267 Recombination protein RecR 0.39 PP_5230 Tyrosine recombinase XerC low > 96
Pseudomonas aeruginosa PUPa3 0.58 NPBIFN_03642 recR recombination mediator RecR 0.40 NPBIFN_05607 xerC tyrosine recombinase XerC low > 101
Pseudomonas aeruginosa MRSN321 0.58 PFGADD_03606 recR recombination mediator RecR 0.40 PFGADD_05531 xerC tyrosine recombinase XerC low > 99
Pseudomonas sp. DMC3 0.58 GFF708 Recombination protein RecR 0.38 GFF370 Tyrosine recombinase XerC low > 89
Pseudomonas aeruginosa PA14 0.58 IKLFDK_07325 recombination mediator RecR 0.40 IKLFDK_27050 tyrosine recombinase XerC 0.62 3
Kangiella aquimarina DSM 16071 0.58 B158DRAFT_2480 DNA replication and repair protein RecR 0.45 B158DRAFT_0244 tyrosine recombinase XerC subunit low > 40
Pseudomonas sp. RS175 0.58 PFR28_01077 Recombination protein RecR 0.38 PFR28_04378 Tyrosine recombinase XerC 0.37 12
Pseudomonas stutzeri RCH2 0.58 Psest_2545 recombination protein RecR 0.40 Psest_3767 tyrosine recombinase XerC 0.26 18
Pseudomonas sp. BP01 0.58 JOY50_RS00135 recR recombination mediator RecR 0.39 JOY50_RS22610 xerC tyrosine recombinase XerC low > 84
Pseudomonas protegens RBAN4 0.58 FABNJH_09905 recR recombination mediator RecR 0.39 FABNJH_30340 xerC tyrosine recombinase XerC — —
Pseudomonas segetis P6 0.58 ACVTMO_RS11090 recR recombination mediator RecR 0.40 ACVTMO_RS22525 xerC tyrosine recombinase XerC — —
Pseudomonas fluorescens FW300-N2C3 0.58 AO356_02495 recombination protein RecR 0.38 AO356_12725 recombinase XerC 0.35 24
Pseudomonas fluorescens FW300-N2E2 0.58 Pf6N2E2_2325 Recombination protein RecR 0.38 Pf6N2E2_4416 Tyrosine recombinase XerC 0.35 23
Pseudomonas fluorescens SBW25-INTG 0.58 PFLU_RS22415 recombination protein RecR 0.34 PFLU_RS29280 tyrosine recombinase XerC 0.24 28
Rhodanobacter denitrificans FW104-10B01 0.58 LRK54_RS01250 recombination mediator RecR 0.37 LRK54_RS08535 tyrosine recombinase XerC low > 59
Pseudomonas fluorescens FW300-N1B4 0.58 Pf1N1B4_3864 Recombination protein RecR 0.38 Pf1N1B4_2171 Tyrosine recombinase XerC low > 87
Pseudomonas fluorescens SBW25 0.58 PFLU_RS22415 recombination protein RecR 0.34 PFLU_RS29280 tyrosine recombinase XerC low > 109
Pseudomonas orientalis W4I3 0.58 QF045_RS22605 recombination mediator RecR 0.37 QF045_RS01960 tyrosine recombinase XerC low > 93
Pseudomonas simiae WCS417 0.58 PS417_20800 recombination protein RecR 0.34 PS417_27595 recombinase XerC 0.28 27
Pseudomonas lactucae CFBP13502 0.58 GEMAOFIL_04304 Recombination protein RecR 0.37 GEMAOFIL_05657 Tyrosine recombinase XerC low > 96
Pseudomonas sp. SVBP6 0.57 COO64_RS18630 recR recombination mediator RecR 0.39 COO64_RS01270 xerC tyrosine recombinase XerC low > 91
Dyella japonica UNC79MFTsu3.2 0.57 ABZR86_RS06235 recombination mediator RecR 0.37 ABZR86_RS15025 tyrosine recombinase XerC 0.46 21
Rhodanobacter denitrificans MT42 0.57 LRK55_RS01020 recombination mediator RecR 0.38 LRK55_RS08300 tyrosine recombinase XerC low > 63
Pseudomonas fluorescens FW300-N2E3 0.57 AO353_00675 recombination protein RecR 0.38 AO353_09050 recombinase XerC 0.40 20
Rhodanobacter sp. FW510-T8 0.57 OKGIIK_05655 recR recombination mediator RecR 0.37 OKGIIK_15325 xerC tyrosine recombinase XerC low > 53
Lysobacter sp. OAE881 0.57 ABIE51_RS14010 recombination mediator RecR 0.38 ABIE51_RS03035 tyrosine recombinase XerC low > 62
Pseudomonas syringae pv. syringae B728a ΔmexB 0.57 Psyr_3396 DNA replication and repair protein RecR 0.39 Psyr_0185 tyrosine recombinase XerC subunit low > 86
Marinobacter adhaerens HP15 0.57 HP15_1883 recombination protein RecR 0.44 HP15_250 site-specific tyrosine recombinase XerC — —
Rhodanobacter sp000427505 FW510-R12 0.57 LRK53_RS08825 recombination mediator RecR 0.37 LRK53_RS02315 tyrosine recombinase XerC low > 59
Pseudomonas syringae pv. syringae B728a 0.57 Psyr_3396 DNA replication and repair protein RecR 0.39 Psyr_0185 tyrosine recombinase XerC subunit 0.29 16
Pseudomonas fluorescens GW456-L13 0.57 PfGW456L13_4074 Recombination protein RecR 0.38 PfGW456L13_842 Tyrosine recombinase XerC 0.26 52
Pseudomonas sp. S08-1 0.55 OH686_02385 recombination protein RecR 0.38 OH686_13785 tyrosine recombinase XerC low > 80
Dechlorosoma suillum PS 0.55 Dsui_1811 recombination protein RecR 0.37 Dsui_0651 tyrosine recombinase XerC low > 51
Xanthomonas campestris pv. campestris strain 8004 0.54 Xcc-8004.4012.1 Recombination protein RecR 0.40 Xcc-8004.847.1 Site-specific tyrosine recombinase — —
Methylophilus sp. DMC18 0.53 GFF1237 Recombination protein RecR 0.40 GFF1535 Tyrosine recombinase XerC low > 43
Variovorax sp. OAS795 0.52 ABID97_RS14700 recombination mediator RecR 0.33 ABID97_RS06150 tyrosine recombinase XerC 0.35 44
Hydrogenophaga sp. GW460-11-11-14-LB1 0.52 GFF4253 Recombination protein RecR 0.31 GFF547 Tyrosine recombinase XerC 0.62 47
Ralstonia sp. UNC404CL21Col 0.52 ABZR87_RS10810 recombination mediator RecR 0.34 ABZR87_RS05065 tyrosine recombinase XerC 0.34 9
Variovorax sp. SCN45 0.52 GFF1110 Recombination protein RecR 0.33 GFF4490 Site-specific tyrosine recombinase XerC low > 127
Herbaspirillum seropedicae SmR1 0.51 HSERO_RS18355 recombinase RecR 0.35 HSERO_RS21475 recombinase XerC low > 78
Paraburkholderia bryophila 376MFSha3.1 0.50 H281DRAFT_00834 DNA replication and repair protein RecR 0.34 H281DRAFT_02202 integrase/recombinase XerC — —
Ralstonia solanacearum PSI07 0.49 RPSI07_RS18205 recombination protein RecR 0.35 RPSI07_RS23690 tyrosine recombinase XerC low > 81
Cupriavidus basilensis FW507-4G11 0.49 RR42_RS13270 recombination protein RecR 0.31 RR42_RS00615 recombinase XerC low > 128
Ralstonia solanacearum UW163 0.49 UW163_RS12640 recombination protein RecR 0.33 UW163_RS03905 tyrosine recombinase XerC — —
Ralstonia solanacearum IBSBF1503 0.49 RALBFv3_RS15170 recombination protein RecR 0.33 RALBFv3_RS09675 tyrosine recombinase XerC low > 76
Paraburkholderia sabiae LMG 24235 0.49 QEN71_RS22285 recombination mediator RecR 0.35 QEN71_RS00355 tyrosine recombinase XerC — —
Ralstonia solanacearum GMI1000 0.49 RS_RS05980 recombination protein RecR 0.34 RS_RS00260 Tyrosine recombinase XerC 1 0.43 38
Paraburkholderia graminis OAS925 0.49 ABIE53_002048 recombination protein RecR 0.33 ABIE53_000426 integrase/recombinase XerC — —
Burkholderia phytofirmans PsJN 0.49 BPHYT_RS09070 recombination protein RecR 0.36 BPHYT_RS01655 tyrosine recombinase XerC — —
Acidovorax sp. GW101-3H11 0.45 Ac3H11_473 Recombination protein RecR 0.31 Ac3H11_1995 Tyrosine recombinase XerC low > 79
Castellaniella sp019104865 MT123 0.43 ABCV34_RS15480 recombination mediator RecR 0.34 ABCV34_RS13455 tyrosine recombinase XerC low > 48
Phocaeicola vulgatus CL09T03C04 0.37 HMPREF1058_RS18560 recombination protein RecR 0.25 HMPREF1058_RS09445 tyrosine-type recombinase/integrase low > 67
Bacteroides stercoris CC31F 0.36 HMPREF1181_RS16455 recombination protein RecR 0.27 HMPREF1181_RS00625 tyrosine recombinase XerC low > 56
Bacteroides thetaiotaomicron VPI-5482 0.36 BT1081 recombination protein recR (NCBI ptt file) 0.29 BT2742 integrase, site-specific recombinase (NCBI ptt file) low > 81

Not shown: 33 genomes with orthologs for CSW01_05375 only; 1 genomes with orthologs for CSW01_00650 only