Conservation of cofitness between CSW01_04395 and CSW01_00650 in Vibrio cholerae E7946 ATCC 55056

92 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_04395 DNA repair protein RecN 1.0 CSW01_00650 tyrosine recombinase XerC 0.55 3
Shewanella oneidensis MR-1 0.56 SO3462 recN DNA repair protein RecN (NCBI ptt file) 0.47 SO4306 xerC integrase/recombinase XerC (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.56 Shewana3_1104 recombination and repair protein (RefSeq) 0.47 Shewana3_0393 tyrosine recombinase XerC (RefSeq) low > 73
Shewanella amazonensis SB2B 0.56 Sama_1026 recombination and repair protein (RefSeq) 0.47 Sama_3247 integrase/recombinase XerC (RefSeq) low > 62
Shewanella loihica PV-4 0.56 Shew_1196 recombination and repair protein (RefSeq) 0.44 Shew_0325 tyrosine recombinase XerC (RefSeq) low > 60
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.55 GFF4162 DNA repair protein RecN 0.55 GFF239 Tyrosine recombinase XerC — —
Enterobacter sp. TBS_079 0.54 MPMX20_03486 DNA repair protein RecN 0.52 MPMX20_04465 Tyrosine recombinase XerC low > 85
Escherichia fergusonii Becca 0.54 EFB2_01277 DNA repair protein RecN 0.54 EFB2_04826 Tyrosine recombinase XerC low > 86
Enterobacter asburiae PDN3 0.54 EX28DRAFT_2719 DNA repair protein RecN 0.54 EX28DRAFT_4480 tyrosine recombinase XerC — —
Escherichia coli BL21 0.54 ECD_02504 recombination and repair protein 0.55 ECD_03687 site-specific tyrosine recombinase low > 61
Escherichia coli ECOR38 0.54 HEPCGN_20265 recN DNA repair protein RecN 0.54 HEPCGN_13125 xerC tyrosine recombinase XerC low > 88
Rahnella sp. WP5 0.54 EX31_RS21760 DNA repair protein RecN 0.56 EX31_RS15165 tyrosine recombinase XerC low > 89
Escherichia coli ECRC101 0.54 MCAODC_11670 recN DNA repair protein RecN 0.55 MCAODC_04925 xerC tyrosine recombinase XerC — —
Escherichia coli ECRC102 0.54 NIAGMN_18915 recN DNA repair protein RecN 0.55 NIAGMN_12175 xerC tyrosine recombinase XerC — —
Escherichia coli BW25113 0.54 b2616 recN recombination and repair protein (NCBI) 0.54 b3811 xerC site-specific tyrosine recombinase XerC (NCBI) low > 76
Escherichia coli Nissle 1917 0.54 ECOLIN_RS14775 DNA repair protein RecN 0.54 ECOLIN_RS21875 tyrosine recombinase XerC low > 55
Escherichia coli HS(pFamp)R (ATCC 700891) 0.54 OHPLBJKB_01091 DNA repair protein RecN 0.54 OHPLBJKB_04239 Tyrosine recombinase XerC low > 74
Klebsiella pneumoniae MKP103 0.54 KDGMDA_02250 DNA repair protein RecN 0.53 KDGMDA_09700 tyrosine recombinase XerC low > 95
Escherichia coli ECRC99 0.54 KEDOAH_07075 recN DNA repair protein RecN 0.55 KEDOAH_13730 xerC tyrosine recombinase XerC — —
Escherichia coli ECOR27 0.54 NOLOHH_12815 recN DNA repair protein RecN 0.54 NOLOHH_06550 xerC tyrosine recombinase XerC low > 76
Escherichia coli ECRC100 0.54 OKFHMN_21145 recN DNA repair protein RecN 0.55 OKFHMN_14420 xerC tyrosine recombinase XerC low > 79
Escherichia coli ECRC62 0.54 BNILDI_11620 recN DNA repair protein RecN 0.54 BNILDI_04985 xerC tyrosine recombinase XerC low > 75
Escherichia coli ECRC98 0.54 JDDGAC_24810 recN DNA repair protein RecN 0.55 JDDGAC_18045 xerC tyrosine recombinase XerC — —
Klebsiella michiganensis M5al 0.54 BWI76_RS21560 DNA repair protein RecN 0.55 BWI76_RS01210 tyrosine recombinase XerC low > 92
Pantoea agglomerans CFBP13505 P0401 0.54 PagCFBP13505_RS14700 DNA repair protein RecN 0.53 PagCFBP13505_RS15380 tyrosine recombinase XerC — —
Pantoea sp. MT58 0.53 IAI47_04810 DNA repair protein RecN 0.53 IAI47_18400 tyrosine recombinase XerC 0.34 57
Erwinia amylovora T8 0.53 OLJFJH_10175 DNA repair protein RecN 0.54 OLJFJH_06415 tyrosine recombinase XerC low > 58
Serratia liquefaciens MT49 0.52 IAI46_19635 DNA repair protein RecN 0.55 IAI46_00725 tyrosine recombinase XerC low > 86
Erwinia tracheiphila SCR3 0.52 LU632_RS16985 recN DNA repair protein RecN 0.53 LU632_RS24135 xerC tyrosine recombinase XerC — —
Dickeya dadantii 3937 0.52 DDA3937_RS04325 DNA repair protein RecN 0.56 DDA3937_RS19890 tyrosine recombinase XerC — —
Erwinia tracheiphila HP pepo 2.2 0.51 IJEDHG_26925 recN DNA repair protein RecN 0.53 IJEDHG_08780 xerC tyrosine recombinase XerC — —
Dickeya dianthicola ME23 0.51 DZA65_RS04235 DNA repair protein RecN 0.56 DZA65_RS21090 tyrosine recombinase XerC low > 75
Dickeya dianthicola 67-19 0.51 HGI48_RS04320 DNA repair protein RecN 0.56 HGI48_RS20045 tyrosine recombinase XerC low > 71
Pectobacterium carotovorum WPP14 0.51 HER17_RS17420 DNA repair protein RecN 0.54 HER17_RS01350 tyrosine recombinase XerC 0.64 7
Alteromonas macleodii MIT1002 0.46 MIT1002_01443 Recombination protein N 0.45 MIT1002_00157 Tyrosine recombinase XerC low > 70
Pseudomonas sp. S08-1 0.44 OH686_17050 DNA repair protein RecN 0.38 OH686_13785 tyrosine recombinase XerC low > 80
Pseudomonas aeruginosa PA14 0.43 IKLFDK_29775 DNA repair protein RecN 0.40 IKLFDK_27050 tyrosine recombinase XerC low > 100
Pseudomonas fluorescens GW456-L13 0.43 PfGW456L13_5106 DNA repair protein RecN 0.38 PfGW456L13_842 Tyrosine recombinase XerC low > 87
Pseudomonas fluorescens FW300-N1B4 0.43 Pf1N1B4_1178 DNA repair protein RecN 0.38 Pf1N1B4_2171 Tyrosine recombinase XerC low > 87
Pseudomonas fluorescens FW300-N2E2 0.43 Pf6N2E2_3370 DNA repair protein RecN 0.38 Pf6N2E2_4416 Tyrosine recombinase XerC 0.36 22
Pseudomonas segetis P6 0.43 MPMX49_01181 DNA repair protein RecN 0.40 MPMX49_04536 Tyrosine recombinase XerC — —
Pseudomonas stutzeri RCH2 0.42 Psest_0962 DNA repair protein RecN 0.40 Psest_3767 tyrosine recombinase XerC 0.37 16
Pseudomonas syringae pv. syringae B728a ΔmexB 0.42 Psyr_4197 DNA replication and repair protein RecN 0.39 Psyr_0185 tyrosine recombinase XerC subunit low > 86
Pseudomonas syringae pv. syringae B728a 0.42 Psyr_4197 DNA replication and repair protein RecN 0.39 Psyr_0185 tyrosine recombinase XerC subunit 0.38 17
Pseudomonas sp. DMC3 0.42 GFF4971 DNA repair protein RecN 0.38 GFF370 Tyrosine recombinase XerC low > 89
Pseudomonas sp. SVBP6 0.41 COO64_RS15270 recN DNA repair protein RecN 0.39 COO64_RS01270 xerC tyrosine recombinase XerC low > 93
Marinobacter adhaerens HP15 0.41 HP15_3084 DNA repair protein RecN 0.44 HP15_250 site-specific tyrosine recombinase XerC low > 73
Pseudomonas lactucae CFBP13502 0.41 GEMAOFIL_04964 DNA repair protein RecN 0.37 GEMAOFIL_05657 Tyrosine recombinase XerC low > 93
Pseudomonas fluorescens SBW25-INTG 0.41 PFLU_RS25910 DNA repair protein RecN 0.34 PFLU_RS29280 tyrosine recombinase XerC 0.32 7
Pseudomonas simiae WCS417 0.41 PS417_24070 recombination and repair protein 0.34 PS417_27595 recombinase XerC 0.26 23
Pseudomonas fluorescens SBW25 0.41 PFLU_RS25910 DNA repair protein RecN 0.34 PFLU_RS29280 tyrosine recombinase XerC low > 109
Pseudomonas fluorescens FW300-N2E3 0.41 AO353_05660 DNA repair protein RecN 0.38 AO353_09050 recombinase XerC 0.41 24
Pseudomonas sp. RS175 0.41 PFR28_00071 DNA repair protein RecN 0.38 PFR28_04378 Tyrosine recombinase XerC 0.23 49
Pseudomonas fluorescens FW300-N2C3 0.40 AO356_07510 DNA repair protein RecN 0.38 AO356_12725 recombinase XerC low > 104
Pseudomonas putida KT2440 0.40 PP_4729 factor used in recombination and DNA repair 0.39 PP_5230 Tyrosine recombinase XerC low > 96
Pseudomonas sp. BP01 0.40 JOY50_RS26735 recN DNA repair protein RecN 0.39 JOY50_RS22610 xerC tyrosine recombinase XerC low > 84
Kangiella aquimarina DSM 16071 0.37 B158DRAFT_0601 DNA replication and repair protein RecN 0.45 B158DRAFT_0244 tyrosine recombinase XerC subunit low > 40
Herbaspirillum seropedicae SmR1 0.36 HSERO_RS03060 DNA repair protein 0.35 HSERO_RS21475 recombinase XerC low > 78
Dyella japonica UNC79MFTsu3.2 0.35 ABZR86_RS05665 DNA repair protein RecN 0.37 ABZR86_RS15025 tyrosine recombinase XerC 0.65 27
Paraburkholderia sabiae LMG 24235 0.35 QEN71_RS26535 DNA repair protein RecN 0.35 QEN71_RS00355 tyrosine recombinase XerC — —
Dechlorosoma suillum PS 0.35 Dsui_3072 DNA repair protein RecN 0.37 Dsui_0651 tyrosine recombinase XerC low > 51
Methylophilus sp. DMC18 0.35 GFF306 DNA repair protein RecN 0.40 GFF1535 Tyrosine recombinase XerC low > 43
Rhodanobacter sp. FW510-T8 0.35 OKGIIK_07340 recN DNA repair protein RecN 0.37 OKGIIK_15325 xerC tyrosine recombinase XerC — —
Castellaniella sp019104865 MT123 0.35 ABCV34_RS07470 DNA repair protein RecN 0.34 ABCV34_RS13455 tyrosine recombinase XerC low > 48
Rhodanobacter sp000427505 FW510-R12 0.35 LRK53_RS11400 DNA repair protein RecN 0.37 LRK53_RS02315 tyrosine recombinase XerC low > 59
Rhodanobacter denitrificans FW104-10B01 0.34 LRK54_RS17960 DNA repair protein RecN 0.37 LRK54_RS08535 tyrosine recombinase XerC low > 59
Rhodanobacter denitrificans MT42 0.34 LRK55_RS17815 DNA repair protein RecN 0.38 LRK55_RS08300 tyrosine recombinase XerC low > 63
Acidovorax sp. GW101-3H11 0.34 Ac3H11_3460 DNA repair protein RecN 0.31 Ac3H11_1995 Tyrosine recombinase XerC low > 79
Xanthomonas campestris pv. campestris strain 8004 0.34 Xcc-8004.3431.1 DNA repair protein RecN 0.40 Xcc-8004.847.1 Site-specific tyrosine recombinase — —
Ralstonia sp. UNC404CL21Col 0.34 ABZR87_RS01065 DNA repair protein RecN 0.34 ABZR87_RS05065 tyrosine recombinase XerC 0.31 13
Ralstonia solanacearum PSI07 0.34 RPSI07_RS11890 DNA repair protein RecN 0.35 RPSI07_RS23690 tyrosine recombinase XerC low > 81
Ralstonia solanacearum UW163 0.33 UW163_RS08210 DNA repair protein RecN 0.33 UW163_RS03905 tyrosine recombinase XerC — —
Ralstonia solanacearum IBSBF1503 0.33 RALBFv3_RS05415 DNA repair protein RecN 0.33 RALBFv3_RS09675 tyrosine recombinase XerC 0.44 72
Ralstonia solanacearum GMI1000 0.33 RS_RS13275 DNA repair protein RecN 0.34 RS_RS00260 Tyrosine recombinase XerC 1 low > 80
Paraburkholderia bryophila 376MFSha3.1 0.33 H281DRAFT_04692 DNA replication and repair protein RecN 0.34 H281DRAFT_02202 integrase/recombinase XerC — —
Paraburkholderia graminis OAS925 0.33 ABIE53_000856 DNA repair protein RecN (Recombination protein N) 0.33 ABIE53_000426 integrase/recombinase XerC — —
Variovorax sp. SCN45 0.32 GFF2357 DNA repair protein RecN 0.33 GFF4490 Site-specific tyrosine recombinase XerC low > 127
Burkholderia phytofirmans PsJN 0.32 BPHYT_RS03560 DNA repair protein 0.36 BPHYT_RS01655 tyrosine recombinase XerC — —
Cupriavidus basilensis FW507-4G11 0.32 RR42_RS05910 DNA repair protein 0.31 RR42_RS00615 recombinase XerC low > 128
Hydrogenophaga sp. GW460-11-11-14-LB1 0.31 GFF829 DNA repair protein RecN 0.31 GFF547 Tyrosine recombinase XerC low > 90
Lysobacter sp. OAE881 0.31 ABIE51_RS11655 DNA repair protein RecN 0.38 ABIE51_RS03035 tyrosine recombinase XerC 0.71 3
Agrobacterium fabrum C58 0.27 Atu2083 DNA repair protein RecN 0.24 Atu2628 site-specific recombinase — —
Bosea sp. OAE506 0.27 ABIE41_RS12645 DNA repair protein RecN 0.21 ABIE41_RS07870 tyrosine recombinase XerC 0.71 7
Phocaeicola dorei CL03T12C01 0.26 ABI39_RS14500 DNA repair protein RecN 0.25 ABI39_RS03835 tyrosine-type recombinase/integrase — —
Bacteroides stercoris CC31F 0.26 HMPREF1181_RS10900 DNA repair protein RecN 0.27 HMPREF1181_RS00625 tyrosine recombinase XerC low > 56
Phocaeicola vulgatus CL09T03C04 0.26 HMPREF1058_RS18225 DNA repair protein RecN 0.25 HMPREF1058_RS09445 tyrosine-type recombinase/integrase low > 67
Magnetospirillum magneticum AMB-1 0.26 AMB_RS19520 DNA repair protein RecN 0.25 AMB_RS21485 tyrosine recombinase XerC — —
Bacteroides thetaiotaomicron VPI-5482 0.26 BT1361 DNA repair protein recN (Recombination protein N) (NCBI ptt file) 0.29 BT2742 integrase, site-specific recombinase (NCBI ptt file) low > 81
Rhodopseudomonas palustris CGA009 0.25 TX73_018240 DNA repair protein RecN 0.22 TX73_000945 tyrosine recombinase XerC low > 86
Bacteroides ovatus ATCC 8483 0.25 BACOVA_00200 DNA repair protein RecN 0.29 BACOVA_01050 site-specific recombinase, phage integrase family/ribosomal subunit interface protein low > 96
Fusobacterium nucleatum SB010 0.24 HUW76_08055 DNA repair protein RecN 0.16 HUW76_06795 tyrosine-type recombinase/integrase low > 35
Azospirillum brasilense Sp245 0.24 AZOBR_RS12395 DNA repair protein RecN 0.23 AZOBR_RS03965 tyrosine recombinase XerC — —
Sphingomonas koreensis DSMZ 15582 0.24 Ga0059261_1026 DNA repair protein RecN 0.22 Ga0059261_2764 Site-specific recombinase XerD 0.35 15

Not shown: 24 genomes with orthologs for CSW01_04395 only; 2 genomes with orthologs for CSW01_00650 only