Conservation of cofitness between CSW01_02875 and CSW01_00650 in Vibrio cholerae E7946 ATCC 55056

92 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_02875 DNA recombination/repair protein RecA 1.0 CSW01_00650 tyrosine recombinase XerC 0.70 1
Pectobacterium carotovorum WPP14 0.83 HER17_RS05045 recombinase RecA 0.54 HER17_RS01350 tyrosine recombinase XerC 0.89 1
Rahnella sp. WP5 0.82 EX31_RS07800 recombinase RecA 0.56 EX31_RS15165 tyrosine recombinase XerC low > 89
Dickeya dianthicola ME23 0.82 DZA65_RS17450 recombinase RecA 0.56 DZA65_RS21090 tyrosine recombinase XerC — —
Dickeya dadantii 3937 0.82 DDA3937_RS16245 recombinase RecA 0.56 DDA3937_RS19890 tyrosine recombinase XerC — —
Dickeya dianthicola 67-19 0.82 HGI48_RS16355 recombinase RecA 0.56 HGI48_RS20045 tyrosine recombinase XerC low > 71
Erwinia tracheiphila HP pepo 2.2 0.81 IJEDHG_01625 recA recombinase RecA 0.53 IJEDHG_08780 xerC tyrosine recombinase XerC — —
Erwinia tracheiphila SCR3 0.81 LU632_RS15735 recA recombinase RecA 0.53 LU632_RS24135 xerC tyrosine recombinase XerC — —
Shewanella oneidensis MR-1 0.81 SO3430 recA recA protein (NCBI ptt file) 0.47 SO4306 xerC integrase/recombinase XerC (NCBI ptt file) low > 76
Enterobacter sp. TBS_079 0.81 MPMX20_03580 Protein RecA 0.52 MPMX20_04465 Tyrosine recombinase XerC 0.49 31
Enterobacter asburiae PDN3 0.81 EX28DRAFT_2785 protein RecA 0.54 EX28DRAFT_4480 tyrosine recombinase XerC — —
Pantoea agglomerans CFBP13505 P0401 0.81 PagCFBP13516_RS04670 recA recombinase RecA 0.53 PagCFBP13516_RS18660 xerC tyrosine recombinase XerC — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.81 GFF4693 RecA protein 0.55 GFF239 Tyrosine recombinase XerC — —
Klebsiella pneumoniae MKP103 0.81 KDGMDA_02850 recombinase RecA 0.53 KDGMDA_09700 tyrosine recombinase XerC low > 94
Klebsiella pneumoniae MRSN742743 0.81 GJGHJB_01083 recA recombinase RecA 0.53 GJGHJB_04826 xerC tyrosine recombinase XerC — —
Shewanella sp. ANA-3 0.81 Shewana3_1126 recA recombinase A (RefSeq) 0.47 Shewana3_0393 tyrosine recombinase XerC (RefSeq) low > 73
Klebsiella michiganensis M5al 0.80 BWI76_RS22180 recombinase RecA 0.55 BWI76_RS01210 tyrosine recombinase XerC — —
Pantoea sp. MT58 0.80 IAI47_04300 recombinase RecA 0.53 IAI47_18400 tyrosine recombinase XerC 0.40 45
Escherichia coli ECOR27 0.80 NOLOHH_12545 recA recombinase RecA 0.54 NOLOHH_06550 xerC tyrosine recombinase XerC low > 75
Escherichia coli ECRC102 0.80 NIAGMN_18475 recA recombinase RecA 0.55 NIAGMN_12175 xerC tyrosine recombinase XerC — —
Escherichia fergusonii Becca 0.80 EFB2_01225 Protein RecA 0.54 EFB2_04826 Tyrosine recombinase XerC low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.80 OHPLBJKB_01035 Protein RecA 0.54 OHPLBJKB_04239 Tyrosine recombinase XerC low > 74
Escherichia coli ECRC100 0.80 OKFHMN_20705 recA recombinase RecA 0.55 OKFHMN_14420 xerC tyrosine recombinase XerC — —
Escherichia coli ECRC98 0.80 JDDGAC_24370 recA recombinase RecA 0.55 JDDGAC_18045 xerC tyrosine recombinase XerC — —
Escherichia coli ECRC101 0.80 MCAODC_11230 recA recombinase RecA 0.55 MCAODC_04925 xerC tyrosine recombinase XerC — —
Escherichia coli BW25113 0.80 b2699 recA recombinase A (NCBI) 0.54 b3811 xerC site-specific tyrosine recombinase XerC (NCBI) 0.51 4
Escherichia coli ECRC99 0.80 KEDOAH_07430 recA recombinase RecA 0.55 KEDOAH_13730 xerC tyrosine recombinase XerC — —
Escherichia coli BL21 0.80 ECD_02549 DNA recombination and repair protein; ssDNA-dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP-dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor 0.55 ECD_03687 site-specific tyrosine recombinase low > 61
Escherichia coli Nissle 1917 0.80 ECOLIN_RS15060 recombinase RecA 0.54 ECOLIN_RS21875 tyrosine recombinase XerC — —
Escherichia coli ECRC62 0.80 BNILDI_11105 recA recombinase RecA 0.54 BNILDI_04985 xerC tyrosine recombinase XerC low > 75
Escherichia coli ECOR38 0.80 HEPCGN_19900 recA recombinase RecA 0.54 HEPCGN_13125 xerC tyrosine recombinase XerC low > 88
Shewanella amazonensis SB2B 0.80 Sama_1046 recA recombinase A (RefSeq) 0.47 Sama_3247 integrase/recombinase XerC (RefSeq) low > 62
Shewanella loihica PV-4 0.80 Shew_1215 recA recombinase A (RefSeq) 0.44 Shew_0325 tyrosine recombinase XerC (RefSeq) low > 60
Erwinia amylovora T8 0.80 OLJFJH_09575 recombinase RecA 0.54 OLJFJH_06415 tyrosine recombinase XerC 0.46 5
Serratia liquefaciens MT49 0.80 IAI46_03840 recombinase RecA 0.55 IAI46_00725 tyrosine recombinase XerC low > 87
Alteromonas macleodii MIT1002 0.77 MIT1002_00955 Recombinase A 0.45 MIT1002_00157 Tyrosine recombinase XerC low > 70
Pseudomonas fluorescens FW300-N2C3 0.73 AO356_05670 recombinase RecA 0.38 AO356_12725 recombinase XerC 0.57 3
Pseudomonas fluorescens FW300-N2E3 0.73 AO353_16805 recombinase RecA 0.38 AO353_09050 recombinase XerC 0.37 12
Pseudomonas sp. RS175 0.73 PFR28_00472 Protein RecA 0.38 PFR28_04378 Tyrosine recombinase XerC low > 88
Pseudomonas fluorescens FW300-N2E2 0.73 Pf6N2E2_2993 RecA protein 0.38 Pf6N2E2_4416 Tyrosine recombinase XerC — —
Pseudomonas sp. S08-1 0.73 OH686_18205 protein RecA 0.38 OH686_13785 tyrosine recombinase XerC low > 80
Pseudomonas aeruginosa MRSN321 0.73 PFGADD_01352 recA recombinase RecA 0.40 PFGADD_05531 xerC tyrosine recombinase XerC 0.44 6
Pseudomonas aeruginosa PUPa3 0.73 NPBIFN_01371 recA recombinase RecA 0.40 NPBIFN_05607 xerC tyrosine recombinase XerC 0.40 18
Pseudomonas aeruginosa PA14 0.73 IKLFDK_18465 recombinase RecA 0.40 IKLFDK_27050 tyrosine recombinase XerC 0.78 1
Pseudomonas segetis P6 0.73 ACVTMO_RS16500 recA recombinase RecA 0.40 ACVTMO_RS22525 xerC tyrosine recombinase XerC — —
Pseudomonas sp. DMC3 0.73 GFF2111 Protein RecA 0.38 GFF370 Tyrosine recombinase XerC low > 89
Pseudomonas sp. FW215-L2 0.73 GFF2559 Protein RecA 0.36 GFF4511 Tyrosine recombinase XerC 0.20 90
Pseudomonas lactucae CFBP13502 0.73 GEMAOFIL_01333 Protein RecA 0.37 GEMAOFIL_05657 Tyrosine recombinase XerC low > 96
Pseudomonas fluorescens GW456-L13 0.73 PfGW456L13_4668 RecA protein 0.38 PfGW456L13_842 Tyrosine recombinase XerC low > 87
Pseudomonas sp. SVBP6 0.73 COO64_RS19930 recA recombinase RecA 0.39 COO64_RS01270 xerC tyrosine recombinase XerC low > 91
Pseudomonas fluorescens FW300-N1B4 0.73 Pf1N1B4_3143 RecA protein 0.38 Pf1N1B4_2171 Tyrosine recombinase XerC low > 87
Pseudomonas fluorescens SBW25-INTG 0.72 PFLU_RS05885 recombinase RecA 0.34 PFLU_RS29280 tyrosine recombinase XerC low > 109
Pseudomonas fluorescens SBW25 0.72 PFLU_RS05885 recombinase RecA 0.34 PFLU_RS29280 tyrosine recombinase XerC low > 109
Pseudomonas orientalis W4I3 0.72 QF045_RS08730 recombinase RecA 0.37 QF045_RS01960 tyrosine recombinase XerC low > 93
Pseudomonas stutzeri RCH2 0.72 Psest_2872 protein RecA 0.40 Psest_3767 tyrosine recombinase XerC 0.39 4
Pseudomonas simiae WCS417 0.72 PS417_05815 recombinase RecA 0.34 PS417_27595 recombinase XerC 0.35 70
Kangiella aquimarina DSM 16071 0.72 B158DRAFT_1531 protein RecA 0.45 B158DRAFT_0244 tyrosine recombinase XerC subunit low > 40
Pseudomonas syringae pv. syringae B728a ΔmexB 0.72 Psyr_1378 RecA protein 0.39 Psyr_0185 tyrosine recombinase XerC subunit 0.34 19
Pseudomonas syringae pv. syringae B728a 0.72 Psyr_1378 RecA protein 0.39 Psyr_0185 tyrosine recombinase XerC subunit low > 86
Pseudomonas protegens RBAN4 0.72 FABNJH_06445 recA recombinase RecA 0.39 FABNJH_30340 xerC tyrosine recombinase XerC — —
Pseudomonas putida KT2440 0.72 PP_1629 Protein RecA 0.39 PP_5230 Tyrosine recombinase XerC 0.40 14
Pseudomonas sp. BP01 0.72 JOY50_RS23780 recA recombinase RecA 0.39 JOY50_RS22610 xerC tyrosine recombinase XerC low > 84
Marinobacter adhaerens HP15 0.71 HP15_1048 recombinase A 0.44 HP15_250 site-specific tyrosine recombinase XerC 0.31 7
Rhodanobacter denitrificans FW104-10B01 0.71 LRK54_RS14980 recombinase RecA 0.37 LRK54_RS08535 tyrosine recombinase XerC low > 59
Rhodanobacter denitrificans MT42 0.71 LRK55_RS14695 recombinase RecA 0.38 LRK55_RS08300 tyrosine recombinase XerC low > 63
Rhodanobacter sp. FW510-T8 0.71 OKGIIK_03740 recA recombinase RecA 0.37 OKGIIK_15325 xerC tyrosine recombinase XerC — —
Rhodanobacter sp000427505 FW510-R12 0.71 LRK53_RS13640 recombinase RecA 0.37 LRK53_RS02315 tyrosine recombinase XerC — —
Lysobacter sp. OAE881 0.69 ABIE51_RS07800 recombinase RecA 0.38 ABIE51_RS03035 tyrosine recombinase XerC 0.67 4
Dyella japonica UNC79MFTsu3.2 0.68 ABZR86_RS00660 recombinase RecA 0.37 ABZR86_RS15025 tyrosine recombinase XerC 0.65 14
Methylophilus sp. DMC18 0.67 GFF841 Protein RecA 0.40 GFF1535 Tyrosine recombinase XerC 0.48 37
Castellaniella sp019104865 MT123 0.67 ABCV34_RS04460 recombinase RecA 0.34 ABCV34_RS13455 tyrosine recombinase XerC 0.55 41
Xanthomonas campestris pv. campestris strain 8004 0.67 Xcc-8004.3111.1 RecA protein 0.40 Xcc-8004.847.1 Site-specific tyrosine recombinase — —
Burkholderia phytofirmans PsJN 0.66 BPHYT_RS16360 recombinase RecA 0.36 BPHYT_RS01655 tyrosine recombinase XerC — —
Collimonas humicola GW821-FHT01A05 0.66 MPMX01_04407 Protein RecA 0.32 MPMX01_04647 Tyrosine recombinase XerC low > 87
Paraburkholderia sabiae LMG 24235 0.66 QEN71_RS02335 recombinase RecA 0.35 QEN71_RS00355 tyrosine recombinase XerC — —
Paraburkholderia bryophila 376MFSha3.1 0.66 H281DRAFT_04208 RecA protein 0.34 H281DRAFT_02202 integrase/recombinase XerC — —
Paraburkholderia graminis OAS925 0.66 ABIE53_003448 recombination protein RecA 0.33 ABIE53_000426 integrase/recombinase XerC — —
Dechlorosoma suillum PS 0.66 Dsui_0707 protein RecA 0.37 Dsui_0651 tyrosine recombinase XerC low > 51
Herbaspirillum seropedicae SmR1 0.65 HSERO_RS03270 protein RecA 0.35 HSERO_RS21475 recombinase XerC low > 78
Variovorax sp. SCN45 0.64 GFF5390 RecA protein 0.33 GFF4490 Site-specific tyrosine recombinase XerC low > 127
Ralstonia solanacearum PSI07 0.64 RPSI07_RS21260 recombinase RecA 0.35 RPSI07_RS23690 tyrosine recombinase XerC low > 81
Variovorax sp. OAS795 0.64 ABID97_RS02275 recombinase RecA 0.33 ABID97_RS06150 tyrosine recombinase XerC 0.64 2
Ralstonia sp. UNC404CL21Col 0.63 ABZR87_RS07965 recombinase RecA 0.34 ABZR87_RS05065 tyrosine recombinase XerC 0.67 4
Acidovorax sp. GW101-3H11 0.63 Ac3H11_1255 RecA protein 0.31 Ac3H11_1995 Tyrosine recombinase XerC — —
Ralstonia solanacearum UW163 0.63 UW163_RS01625 recombinase RecA 0.33 UW163_RS03905 tyrosine recombinase XerC — —
Ralstonia solanacearum IBSBF1503 0.63 RALBFv3_RS12010 recombinase RecA 0.33 RALBFv3_RS09675 tyrosine recombinase XerC low > 76
Ralstonia solanacearum GMI1000 0.63 RS_RS02760 DNA recombination/repair protein RecA 0.34 RS_RS00260 Tyrosine recombinase XerC 1 — —
Cupriavidus basilensis FW507-4G11 0.63 RR42_RS03080 recombinase RecA 0.31 RR42_RS00615 recombinase XerC 0.29 17
Hydrogenophaga sp. GW460-11-11-14-LB1 0.62 GFF2500 RecA protein 0.31 GFF547 Tyrosine recombinase XerC 0.33 70
Phocaeicola vulgatus CL09T03C04 0.56 HMPREF1058_RS15965 recombinase RecA 0.25 HMPREF1058_RS09445 tyrosine-type recombinase/integrase low > 67
Bacteroides stercoris CC31F 0.55 HMPREF1181_RS11910 recombinase RecA 0.27 HMPREF1181_RS00625 tyrosine recombinase XerC low > 56
Bacteroides ovatus ATCC 8483 0.55 BACOVA_05402 RecA protein 0.29 BACOVA_01050 site-specific recombinase, phage integrase family/ribosomal subunit interface protein low > 96
Bacteroides thetaiotaomicron VPI-5482 0.55 BT4610 RecA (NCBI ptt file) 0.29 BT2742 integrase, site-specific recombinase (NCBI ptt file) low > 81

Not shown: 32 genomes with orthologs for CSW01_02875 only; 0 genomes with orthologs for CSW01_00650 only