| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Klebsiella michiganensis M5al | 1.0 | BWI76_RS00865 | | DNA-binding transcriptional regulator OxyR | 1.0 | BWI76_RS26125 | | carboxypeptidase/penicillin-binding protein 1A | 0.26 | 20 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.98 | GFF2347 | | Hydrogen peroxide-inducible genes activator | 0.89 | GFF623 | | Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) | low | > 78 |
| Enterobacter asburiae PDN3 | 0.96 | EX28DRAFT_4424 | | Transcriptional regulator | 0.89 | EX28DRAFT_4146 | | penicillin-binding protein, 1A family | — | — |
| Enterobacter sp. TBS_079 | 0.96 | MPMX20_04519 | | Hydrogen peroxide-inducible genes activator | 0.88 | MPMX20_04284 | | Penicillin-binding protein 1A | low | > 85 |
| Escherichia coli Nissle 1917 | 0.96 | ECOLIN_RS22870 | | DNA-binding transcriptional regulator OxyR | 0.88 | ECOLIN_RS19395 | | peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA | low | > 55 |
| Escherichia coli ECRC101 | 0.96 | MCAODC_04065 | oxyR | DNA-binding transcriptional regulator OxyR | 0.88 | MCAODC_07610 | mrcA | peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA | 0.43 | 69 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.96 | OHPLBJKB_04089 | | Hydrogen peroxide-inducible genes activator | 0.88 | OHPLBJKB_00307 | | Penicillin-binding protein 1A | low | > 73 |
| Escherichia coli BL21 | 0.96 | ECD_03846 | | oxidative and nitrosative stress transcriptional regulator | 0.88 | ECD_03248 | | penicillin-binding protein 1a, murein transglycosylase and transpeptidase | low | > 61 |
| Escherichia coli ECRC62 | 0.96 | BNILDI_05825 | oxyR | DNA-binding transcriptional regulator OxyR | 0.88 | BNILDI_02650 | mrcA | peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA | low | > 75 |
| Escherichia coli BW25113 | 0.96 | b3961 | oxyR | DNA-binding transcriptional dual regulator (NCBI) | 0.88 | b3396 | mrcA | peptidoglycan synthetase; penicillin-binding protein 1A (VIMSS) | low | > 76 |
| Escherichia coli ECOR38 | 0.96 | HEPCGN_12210 | oxyR | DNA-binding transcriptional regulator OxyR | 0.88 | HEPCGN_15900 | mrcA | peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA | low | > 87 |
| Escherichia coli ECRC102 | 0.96 | NIAGMN_11315 | oxyR | DNA-binding transcriptional regulator OxyR | 0.88 | NIAGMN_14850 | mrcA | peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA | — | — |
| Escherichia coli ECRC98 | 0.96 | JDDGAC_17190 | oxyR | DNA-binding transcriptional regulator OxyR | 0.88 | JDDGAC_20710 | mrcA | peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA | low | > 86 |
| Escherichia coli ECRC99 | 0.96 | KEDOAH_14595 | oxyR | DNA-binding transcriptional regulator OxyR | 0.88 | KEDOAH_11060 | mrcA | peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA | — | — |
| Escherichia coli ECOR27 | 0.96 | NOLOHH_05700 | oxyR | DNA-binding transcriptional regulator OxyR | 0.88 | NOLOHH_08870 | mrcA | peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA | low | > 75 |
| Escherichia fergusonii Becca | 0.96 | EFB2_04651 | | Hydrogen peroxide-inducible genes activator | 0.88 | EFB2_00432 | | Penicillin-binding protein 1A | low | > 86 |
| Escherichia coli ECRC100 | 0.96 | OKFHMN_13565 | oxyR | DNA-binding transcriptional regulator OxyR | 0.88 | OKFHMN_17080 | mrcA | peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA | low | > 80 |
| Pectobacterium carotovorum WPP14 | 0.90 | HER17_RS00955 | | DNA-binding transcriptional regulator OxyR | 0.78 | HER17_RS01745 | | peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA | low | > 75 |
| Dickeya dianthicola ME23 | 0.89 | DZA65_RS21450 | | DNA-binding transcriptional regulator OxyR | 0.75 | DZA65_RS20795 | | peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA | low | > 75 |
| Dickeya dianthicola 67-19 | 0.89 | HGI48_RS20405 | | DNA-binding transcriptional regulator OxyR | 0.75 | HGI48_RS19710 | | peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA | low | > 71 |
| Dickeya dadantii 3937 | 0.89 | DDA3937_RS00970 | | DNA-binding transcriptional regulator OxyR | 0.75 | DDA3937_RS19580 | | peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA | 0.56 | 33 |
| Serratia liquefaciens MT49 | 0.88 | IAI46_24475 | | DNA-binding transcriptional regulator OxyR | 0.79 | IAI46_23740 | | peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA | low | > 86 |
| Pantoea sp. MT58 | 0.88 | IAI47_00930 | | DNA-binding transcriptional regulator OxyR | 0.79 | IAI47_01860 | | peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA | low | > 76 |
| Rahnella sp. WP5 | 0.88 | EX31_RS14170 | | DNA-binding transcriptional regulator OxyR | 0.78 | EX31_RS04750 | | peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA | low | > 89 |
| Erwinia tracheiphila SCR3 | 0.87 | LU632_RS19590 | oxyR | DNA-binding transcriptional regulator OxyR | 0.77 | LU632_RS22900 | mrcA | peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.63 | CSW01_13340 | | DNA-binding transcriptional regulator OxyR | 0.51 | CSW01_13335 | | penicillin-binding protein 1A | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.42 | LRK54_RS04765 | | LysR substrate-binding domain-containing protein | 0.34 | LRK54_RS11830 | | penicillin-binding protein 1A | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.42 | LRK55_RS04545 | | LysR substrate-binding domain-containing protein | 0.34 | LRK55_RS11555 | | penicillin-binding protein 1A | low | > 63 |
| Rhodanobacter sp. FW510-T8 | 0.42 | OKGIIK_01995 | lysR | DNA-binding transcriptional regulator OxyR | 0.35 | OKGIIK_12065 | | Penicillin-binding protein 1A | low | > 52 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.42 | Xcc-8004.4224.1 | | Hydrogen peroxide-inducible genes activator | 0.30 | Xcc-8004.1196.1 | | Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) | low | > 74 |
| Dyella japonica UNC79MFTsu3.2 | 0.41 | ABZR86_RS19355 | | DNA-binding transcriptional regulator OxyR | 0.34 | ABZR86_RS11815 | | penicillin-binding protein 1A | low | > 74 |
| Lysobacter sp. OAE881 | 0.39 | ABIE51_RS05475 | | LysR substrate-binding domain-containing protein | 0.31 | ABIE51_RS17190 | | penicillin-binding protein 1A | low | > 62 |
| Rhodospirillum rubrum S1H | 0.37 | Rru_A0334 | | Transcriptional Regulator, LysR family (NCBI) | 0.26 | Rru_A2147 | | Penicillin-binding protein 1A (NCBI) | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.36 | Psyr_0202 | | transcriptional regulator, LysR family | 0.37 | Psyr_0402 | | Peptidoglycan glycosyltransferase | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.36 | Psyr_0202 | | transcriptional regulator, LysR family | 0.37 | Psyr_0402 | | Peptidoglycan glycosyltransferase | low | > 86 |
| Pseudomonas stutzeri RCH2 | 0.36 | Psest_4191 | | Transcriptional regulator | 0.36 | Psest_3720 | | penicillin-binding protein, 1A family | low | > 67 |
| Pseudomonas putida KT2440 | 0.36 | PP_5309 | | oxidative and nitrosative stress transcriptional dual regulator | 0.36 | PP_5084 | | penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase | low | > 96 |
| Herbaspirillum seropedicae SmR1 | 0.36 | HSERO_RS18935 | | LysR family transcriptional regulator | 0.30 | HSERO_RS20890 | | penicillin-binding protein 1A | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.36 | Pf6N2E2_4353 | | Hydrogen peroxide-inducible genes activator | 0.35 | Pf6N2E2_3761 | | Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) | low | > 103 |
| Azospirillum sp. SherDot2 | 0.35 | MPMX19_04930 | | Hydrogen peroxide-inducible genes activator | 0.26 | MPMX19_00340 | | Penicillin-binding protein 1A | — | — |
| Pseudomonas sp. S08-1 | 0.35 | OH686_13510 | | Hydrogen peroxide-inducible genes activator | 0.35 | OH686_10055 | | Multimodular transpeptidase-transglycosylase | low | > 80 |
| Pseudomonas simiae WCS417 | 0.35 | PS417_27865 | | LysR family transcriptional regulator | 0.35 | PS417_01955 | | peptidase | 0.35 | 40 |
| Ralstonia sp. UNC404CL21Col | 0.35 | ABZR87_RS01255 | | LysR substrate-binding domain-containing protein | 0.31 | ABZR87_RS02625 | | penicillin-binding protein 1A | — | — |
| Kangiella aquimarina DSM 16071 | 0.35 | B158DRAFT_0567 | | Transcriptional regulator | 0.38 | B158DRAFT_0757 | | penicillin-binding protein, 1A family | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.35 | H281DRAFT_04673 | | transcriptional regulator, LysR family | 0.31 | H281DRAFT_05609 | | penicillin-binding protein 1A | low | > 103 |
| Dechlorosoma suillum PS | 0.34 | Dsui_0823 | | transcriptional regulator | 0.31 | Dsui_1186 | | penicillin-binding protein, 1A family | — | — |
| Pseudomonas fluorescens SBW25 | 0.34 | PFLU_RS29545 | | hydrogen peroxide-inducible genes activator | 0.36 | PFLU_RS02000 | | penicillin-binding protein 1A | low | > 109 |
| Cupriavidus basilensis FW507-4G11 | 0.34 | RR42_RS17385 | | LysR family transcriptional regulator | 0.30 | RR42_RS19040 | | penicillin-binding protein | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.34 | AO356_12385 | | LysR family transcriptional regulator | 0.36 | AO356_09420 | | peptidase | low | > 104 |
| Ralstonia solanacearum UW163 | 0.34 | UW163_RS08020 | | hydrogen peroxide-inducible genes activator | 0.31 | UW163_RS06645 | | penicillin-binding protein 1A | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.34 | PFLU_RS29545 | | hydrogen peroxide-inducible genes activator | 0.36 | PFLU_RS02000 | | penicillin-binding protein 1A | low | > 109 |
| Ralstonia solanacearum IBSBF1503 | 0.34 | RALBFv3_RS05605 | | hydrogen peroxide-inducible genes activator | 0.31 | RALBFv3_RS06970 | | penicillin-binding protein 1A | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.34 | PfGW456L13_773 | | Hydrogen peroxide-inducible genes activator | 0.35 | PfGW456L13_282 | | Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) | low | > 87 |
| Ralstonia solanacearum GMI1000 | 0.34 | RS_RS13470 | | hydrogen peroxide-inducible genes activator | 0.31 | RS_RS14915 | | penicillin-binding protein 1A | — | — |
| Burkholderia phytofirmans PsJN | 0.34 | BPHYT_RS03470 | | LysR family transcriptional regulator | 0.31 | BPHYT_RS11390 | | penicillin-binding protein 1A | low | > 109 |
| Pseudomonas sp. RS175 | 0.34 | PFR28_04434 | | Hydrogen peroxide-inducible genes activator | 0.36 | PFR28_05006 | | Penicillin-binding protein 1A | low | > 88 |
| Ralstonia solanacearum PSI07 | 0.34 | RPSI07_RS11690 | | hydrogen peroxide-inducible genes activator | 0.31 | RPSI07_RS10265 | | penicillin-binding protein 1A | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.34 | QEN71_RS26625 | | LysR substrate-binding domain-containing protein | 0.32 | QEN71_RS28065 | | penicillin-binding protein 1A | low | > 153 |
| Paraburkholderia graminis OAS925 | 0.34 | ABIE53_000834 | | LysR family hydrogen peroxide-inducible transcriptional activator | 0.31 | ABIE53_003746 | | penicillin-binding protein 1A | low | > 113 |
| Pseudomonas fluorescens FW300-N1B4 | 0.34 | Pf1N1B4_2106 | | Hydrogen peroxide-inducible genes activator | 0.36 | Pf1N1B4_1544 | | Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) | 0.34 | 77 |
| Rhodopseudomonas palustris CGA009 | 0.34 | TX73_002235 | | LysR substrate-binding domain-containing protein | 0.25 | TX73_012680 | | penicillin-binding protein 1A | — | — |
| Sinorhizobium meliloti 1021 | 0.34 | SMc00818 | | hydrogen peroxide-inducible genes activator (morphology and AUTO-aggregation control protein) | 0.24 | SMc01334 | | penicillin-binding 1A transmembrane protein | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.34 | AO353_09315 | | LysR family transcriptional regulator | 0.36 | AO353_12470 | | peptidase | 0.49 | 12 |
| Marinobacter adhaerens HP15 | 0.33 | HP15_308 | | oxidative stress regulatory protein OxyR | 0.33 | HP15_473 | | penicillin-binding protein, 1A family | — | — |
| Agrobacterium fabrum C58 | 0.33 | Atu4641 | | LysR family transcriptional regulator | 0.23 | Atu1341 | | penicillin-binding protein 1a | — | — |
| Caulobacter crescentus NA1000 Δfur | 0.31 | CCNA_03811 | | LysR-family transcriptional regulator | 0.22 | CCNA_01951 | | multimodular transpeptidase-transglycosylase PbpY | — | — |
| Caulobacter crescentus NA1000 | 0.31 | CCNA_03811 | | LysR-family transcriptional regulator | 0.22 | CCNA_01951 | | multimodular transpeptidase-transglycosylase PbpY | low | > 66 |
| Sphingomonas koreensis DSMZ 15582 | 0.30 | Ga0059261_0159 | | Transcriptional regulator | 0.20 | Ga0059261_2697 | | Membrane carboxypeptidase/penicillin-binding protein | low | > 68 |
| Phaeobacter inhibens DSM 17395 | 0.30 | PGA1_78p00040 | | hydrogen peroxide-inducible genes activator OxyR | 0.20 | PGA1_c20280 | | penicillin-binding protein 1A MrcA | — | — |
| Magnetospirillum magneticum AMB-1 | 0.30 | AMB_RS03045 | | hydrogen peroxide-inducible genes activator | 0.24 | AMB_RS16340 | | penicillin-binding protein 1A | low | > 64 |
| Rhizobium sp. OAE497 | 0.29 | ABIE40_RS29270 | | LysR substrate-binding domain-containing protein | 0.24 | ABIE40_RS07555 | | penicillin-binding protein 1A | — | — |
| Bosea sp. OAE506 | 0.29 | ABIE41_RS01195 | | hydrogen peroxide-inducible genes activator | 0.24 | ABIE41_RS16150 | | penicillin-binding protein 1A | low | > 77 |
| Dinoroseobacter shibae DFL-12 | 0.29 | Dshi_0727 | | transcriptional regulator, LysR family (RefSeq) | 0.22 | Dshi_1171 | | penicillin-binding protein, 1A family (RefSeq) | — | — |
| Acinetobacter radioresistens SK82 | 0.28 | MPMX26_02334 | | Hydrogen peroxide-inducible genes activator | 0.32 | MPMX26_02817 | | Penicillin-binding protein 1A | low | > 36 |
| Alteromonas macleodii MIT1002 | 0.27 | MIT1002_01120 | | Morphology and auto-aggregation control protein | 0.46 | MIT1002_00454 | | Penicillin-binding protein 1A | low | > 70 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.26 | A4249_RS12755 | | hydrogen peroxide-inducible genes activator | 0.22 | A4249_RS04500 | | penicillin-binding protein 1A | — | — |
| Shewanella oneidensis MR-1 | 0.26 | SO1328 | | transcriptional regulator, LysR family (NCBI ptt file) | 0.49 | SO0280 | mrcA | penicillin-binding protein 1A (NCBI ptt file) | — | — |
| Shewanella sp. ANA-3 | 0.26 | Shewana3_3046 | | LysR family transcriptional regulator (RefSeq) | 0.48 | Shewana3_3900 | | 1A family penicillin-binding protein (RefSeq) | — | — |
| Shewanella loihica PV-4 | 0.25 | Shew_1035 | | LysR family transcriptional regulator (RefSeq) | 0.47 | Shew_0207 | | 1A family penicillin-binding protein (RefSeq) | — | — |
| Shewanella amazonensis SB2B | 0.24 | Sama_0860 | | LysR family transcriptional regulator (RefSeq) | 0.49 | Sama_3374 | | penicillin-binding protein 1A (RefSeq) | low | > 62 |
Not shown: 13 genomes with orthologs for BWI76_RS00865 only; 4 genomes with orthologs for BWI76_RS26125 only