| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Burkholderia phytofirmans PsJN | 1.0 | BPHYT_RS12460 | | RNA methyltransferase | 1.0 | BPHYT_RS09640 | | DNAase | 0.42 | 2 |
| Paraburkholderia graminis OAS925 | 0.89 | ABIE53_002713 | | tRNA/rRNA methyltransferase | 0.96 | ABIE53_002166 | | TatD DNase family protein | low | > 113 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.88 | H281DRAFT_00540 | | tRNA/rRNA methyltransferase | 0.95 | H281DRAFT_00931 | | TatD DNase family protein | low | > 103 |
| Paraburkholderia sabiae LMG 24235 | 0.70 | QEN71_RS06100 | | RNA methyltransferase | 0.93 | QEN71_RS21805 | | TatD family hydrolase | 0.83 | 59 |
| Herbaspirillum seropedicae SmR1 | 0.48 | HSERO_RS08585 | | RNA methyltransferase | 0.64 | HSERO_RS12995 | | DNAase | low | > 78 |
| Ralstonia solanacearum PSI07 | 0.47 | RPSI07_RS18405 | | RNA methyltransferase | 0.63 | RPSI07_RS16465 | | TatD family deoxyribonuclease | low | > 81 |
| Ralstonia solanacearum GMI1000 | 0.47 | RS_RS05785 | | RNA methyltransferase | 0.65 | RS_RS09020 | | TatD family deoxyribonuclease | low | > 80 |
| Ralstonia solanacearum IBSBF1503 | 0.46 | RALBFv3_RS14970 | | RNA methyltransferase | 0.63 | RALBFv3_RS01010 | | TatD family deoxyribonuclease | low | > 76 |
| Ralstonia solanacearum UW163 | 0.46 | UW163_RS12440 | | RNA methyltransferase | 0.63 | UW163_RS14320 | | TatD family deoxyribonuclease | — | — |
| Ralstonia sp. UNC404CL21Col | 0.46 | ABZR87_RS10615 | | RNA methyltransferase | 0.64 | ABZR87_RS12460 | | TatD family hydrolase | low | > 80 |
| Pseudomonas fluorescens FW300-N1B4 | 0.40 | Pf1N1B4_868 | | tRNA:Cm32/Um32 methyltransferase | 0.40 | Pf1N1B4_420 | | Putative deoxyribonuclease YcfH | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.40 | AO353_15820 | | RNA methyltransferase | 0.43 | AO353_01325 | | hydrolase TatD | low | > 101 |
| Pseudomonas simiae WCS417 | 0.39 | PS417_23215 | | RNA methyltransferase | 0.42 | PS417_21405 | | hydrolase TatD | low | > 88 |
| Pseudomonas fluorescens GW456-L13 | 0.39 | PfGW456L13_4876 | | tRNA:Cm32/Um32 methyltransferase | 0.43 | PfGW456L13_2112 | | Putative deoxyribonuclease YcfH | low | > 87 |
| Pseudomonas fluorescens SBW25-INTG | 0.39 | PFLU_RS24870 | | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | 0.42 | PFLU_RS23020 | | TatD family hydrolase | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.39 | PFLU_RS24870 | | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | 0.42 | PFLU_RS23020 | | TatD family hydrolase | low | > 109 |
| Pseudomonas sp. S08-1 | 0.39 | OH686_17460 | | tRNA (cytidine(32)/uridine(32)-2'-O)-methyltransferase | 0.42 | OH686_22180 | | Uncharacterized metal-dependent hydrolase YcfH | low | > 80 |
| Pseudomonas sp. RS175 | 0.39 | PFR28_00283 | | 'tRNA (cytidine/uridine/adenosine-2'-O-)-methyltransferase TrmJ' transl_table=11 | 0.42 | PFR28_03002 | | putative metal-dependent hydrolase YcfH | low | > 88 |
| Pseudomonas fluorescens FW300-N2E2 | 0.38 | Pf6N2E2_3192 | | tRNA:Cm32/Um32 methyltransferase | 0.41 | Pf6N2E2_5960 | | Putative deoxyribonuclease YcfH | low | > 103 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.38 | Psyr_1234 | | RNA methyltransferase TrmH, group 1 | 0.41 | Psyr_1655 | | TatD-related deoxyribonuclease | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.38 | Psyr_1234 | | RNA methyltransferase TrmH, group 1 | 0.41 | Psyr_1655 | | TatD-related deoxyribonuclease | low | > 86 |
| Pseudomonas fluorescens FW300-N2C3 | 0.38 | AO356_06660 | | RNA methyltransferase | 0.41 | AO356_20205 | | hydrolase TatD | low | > 104 |
| Pseudomonas stutzeri RCH2 | 0.38 | Psest_1248 | | RNA methyltransferase, TrmH family, group 1 | 0.42 | Psest_1696 | | hydrolase, TatD family | 0.33 | 46 |
| Castellaniella sp019104865 MT123 | 0.37 | ABCV34_RS00355 | | RNA methyltransferase | 0.53 | ABCV34_RS03960 | | TatD family hydrolase | low | > 48 |
| Pseudomonas putida KT2440 | 0.37 | PP_0839 | | tRNA Cm32/Um32 methyltransferase | 0.41 | PP_1967 | | tRNA D-aminoacylase | low | > 96 |
| Variovorax sp. OAS795 | 0.35 | ABID97_RS20730 | | RNA methyltransferase | 0.56 | ABID97_RS16000 | | TatD family hydrolase | low | > 91 |
| Dechlorosoma suillum PS | 0.35 | Dsui_2367 | | RNA methyltransferase, TrmH family, group 1 | 0.58 | Dsui_2652 | | hydrolase, TatD family | low | > 51 |
| Acidovorax sp. GW101-3H11 | 0.35 | Ac3H11_3646 | | tRNA:Cm32/Um32 methyltransferase | 0.55 | Ac3H11_2488 | | Putative deoxyribonuclease YcfH | low | > 79 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.35 | GFF3650 | | tRNA:Cm32/Um32 methyltransferase | 0.54 | GFF4665 | | Putative deoxyribonuclease YcfH | — | — |
| Serratia liquefaciens MT49 | 0.34 | IAI46_19365 | | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | 0.40 | IAI46_09825 | | metal-dependent hydrolase | low | > 86 |
| Variovorax sp. SCN45 | 0.34 | GFF4680 | | tRNA (cytidine(32)/uridine(32)-2'-O)-methyltransferase (EC 2.1.1.200) | 0.57 | GFF34 | | Uncharacterized metal-dependent hydrolase YcfH | low | > 127 |
| Enterobacter sp. TBS_079 | 0.34 | MPMX20_03413 | | tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ | 0.37 | MPMX20_01780 | | putative metal-dependent hydrolase YcfH | low | > 85 |
| Klebsiella michiganensis M5al | 0.33 | BWI76_RS21170 | | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | 0.38 | BWI76_RS11125 | | metal-dependent hydrolase | low | > 92 |
| Pectobacterium carotovorum WPP14 | 0.33 | HER17_RS06005 | | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | 0.41 | HER17_RS08685 | | metal-dependent hydrolase | low | > 75 |
| Rahnella sp. WP5 | 0.33 | EX31_RS20555 | | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | 0.41 | EX31_RS24470 | | metal-dependent hydrolase | low | > 89 |
| Shewanella loihica PV-4 | 0.33 | Shew_2320 | | RNA methyltransferase (RefSeq) | 0.39 | Shew_1582 | | TatD family hydrolase (RefSeq) | low | > 60 |
| Escherichia coli BW25113 | 0.33 | b2532 | yfhQ | predicted methyltransferase (NCBI) | 0.37 | b1100 | ycfH | predicted metallodependent hydrolase (NCBI) | low | > 76 |
| Escherichia coli BL21 | 0.33 | ECD_02424 | | tRNA mC32,mU32 2'-O-methyltransferase, SAM-dependent | 0.37 | ECD_01096 | | putative DNase | low | > 61 |
| Escherichia coli ECOR27 | 0.33 | NOLOHH_13280 | trmJ | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | 0.37 | NOLOHH_21070 | ycfH | metal-dependent hydrolase | — | — |
| Dickeya dianthicola ME23 | 0.33 | DZA65_RS16730 | | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | 0.42 | DZA65_RS13620 | | metal-dependent hydrolase | low | > 75 |
| Escherichia fergusonii Becca | 0.33 | EFB2_01358 | | tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ | 0.37 | EFB2_02875 | | putative metal-dependent hydrolase YcfH | low | > 86 |
| Escherichia coli ECRC100 | 0.33 | OKFHMN_21610 | trmJ | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | 0.37 | OKFHMN_03540 | ycfH | metal-dependent hydrolase | low | > 80 |
| Shewanella oneidensis MR-1 | 0.33 | SO2261 | | RNA methyltransferase, TrmH family, group 1 (NCBI ptt file) | 0.41 | SO2610 | | hydrolase, TatD family (NCBI ptt file) | low | > 76 |
| Escherichia coli ECRC98 | 0.33 | JDDGAC_25285 | trmJ | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | 0.37 | JDDGAC_07200 | ycfH | metal-dependent hydrolase | low | > 86 |
| Escherichia coli ECRC62 | 0.33 | BNILDI_12080 | trmJ | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | 0.37 | BNILDI_19230 | ycfH | metal-dependent hydrolase | low | > 75 |
| Escherichia coli ECRC99 | 0.33 | KEDOAH_06610 | trmJ | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | 0.37 | KEDOAH_24215 | ycfH | metal-dependent hydrolase | — | — |
| Enterobacter asburiae PDN3 | 0.33 | EX28DRAFT_0107 | | RNA methyltransferase, TrmH family, group 1 | 0.37 | EX28DRAFT_1829 | | hydrolase, TatD family | low | > 76 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.33 | OHPLBJKB_01177 | | 'tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ' transl_table=11 | 0.37 | OHPLBJKB_02566 | | putative metal-dependent hydrolase YcfH | low | > 73 |
| Escherichia coli ECRC102 | 0.33 | NIAGMN_19380 | trmJ | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | 0.37 | NIAGMN_24290 | ycfH | metal-dependent hydrolase | — | — |
| Escherichia coli Nissle 1917 | 0.33 | ECOLIN_RS14375 | | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | 0.37 | ECOLIN_RS06350 | | metal-dependent hydrolase | — | — |
| Rhodanobacter sp. FW510-T8 | 0.33 | OKGIIK_02340 | trmJ | RNA methyltransferase | 0.22 | OKGIIK_16210 | tatD | 3'->5' ssDNA/RNA exonuclease TatD | low | > 52 |
| Escherichia coli ECRC101 | 0.33 | MCAODC_12140 | trmJ | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | 0.37 | MCAODC_22900 | ycfH | metal-dependent hydrolase | low | > 87 |
| Escherichia coli ECOR38 | 0.33 | HEPCGN_20750 | trmJ | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | 0.37 | HEPCGN_23940 | ycfH | metal-dependent hydrolase | low | > 87 |
| Shewanella sp. ANA-3 | 0.33 | Shewana3_2283 | | RNA methyltransferase (RefSeq) | 0.40 | Shewana3_1769 | | TatD family hydrolase (RefSeq) | low | > 73 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.33 | GFF2437 | | tRNA:Cm32/Um32 methyltransferase | 0.37 | GFF3382 | | Putative deoxyribonuclease YcfH | low | > 78 |
| Pantoea sp. MT58 | 0.33 | IAI47_04995 | | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | 0.39 | IAI47_12035 | | metal-dependent hydrolase | low | > 76 |
| Dickeya dianthicola 67-19 | 0.33 | HGI48_RS15655 | | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | 0.42 | HGI48_RS13150 | | metal-dependent hydrolase | low | > 71 |
| Marinobacter adhaerens HP15 | 0.32 | HP15_1484 | | RNA methyltransferase, TrmH family, group 1 | 0.31 | HP15_3420 | | hydrolase, TatD family | low | > 73 |
| Erwinia tracheiphila SCR3 | 0.32 | LU632_RS17880 | trmJ | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | 0.39 | LU632_RS14785 | | metal-dependent hydrolase | low | > 74 |
| Dickeya dadantii 3937 | 0.32 | DDA3937_RS15555 | | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | 0.42 | DDA3937_RS13085 | | metal-dependent hydrolase | low | > 74 |
| Kangiella aquimarina DSM 16071 | 0.32 | B158DRAFT_1456 | | RNA methyltransferase, TrmH family, group 1 | 0.45 | B158DRAFT_1745 | | hydrolase, TatD family | low | > 40 |
| Alteromonas macleodii MIT1002 | 0.32 | MIT1002_02806 | | tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ | 0.43 | MIT1002_01740 | | putative deoxyribonuclease YcfH | low | > 70 |
| Shewanella amazonensis SB2B | 0.32 | Sama_1290 | | RNA methyltransferase (RefSeq) | 0.43 | Sama_2040 | | TatD family hydrolase (RefSeq) | low | > 62 |
| Dyella japonica UNC79MFTsu3.2 | 0.29 | ABZR86_RS19895 | | RNA methyltransferase | 0.25 | ABZR86_RS13140 | | TatD family hydrolase | low | > 74 |
| Vibrio cholerae E7946 ATCC 55056 | 0.28 | CSW01_03875 | | tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ | 0.43 | CSW01_10060 | | YchF/TatD family DNA exonuclease | low | > 62 |
| Phaeobacter inhibens DSM 17395 | 0.24 | PGA1_c15100 | | tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ | 0.35 | PGA1_c07990 | | putative hydrolase, TatD family | low | > 62 |
| Acinetobacter radioresistens SK82 | 0.24 | MPMX26_01876 | | tRNA (cytidine/uridine/adenosine-2'-O-)-methyltransferase TrmJ | 0.38 | MPMX26_01224 | | putative metal-dependent hydrolase YcfH | low | > 36 |
| Rhodospirillum rubrum S1H | 0.24 | Rru_A0696 | | RNA methyltransferase TrmH, group 1 (NCBI) | 0.37 | Rru_A1700 | | TatD-related deoxyribonuclease (NCBI) | low | > 58 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.22 | A4249_RS10425 | | RNA methyltransferase | 0.31 | A4249_RS04755 | | TatD family hydrolase | low | > 48 |
| Agrobacterium fabrum C58 | 0.22 | Atu1868 | | tRNA/rRNA methyltransferase | 0.33 | Atu1495 | | hypothetical protein | low | > 89 |
| Azospirillum sp. SherDot2 | 0.21 | MPMX19_02031 | | tRNA (cytidine/uridine/adenosine-2'-O-)-methyltransferase TrmJ | 0.43 | MPMX19_01469 | | putative metal-dependent hydrolase YcfH | 0.36 | 72 |
| Rhizobium sp. OAE497 | 0.21 | ABIE40_RS10270 | | RNA methyltransferase | 0.32 | ABIE40_RS09480 | | TatD family hydrolase | low | > 107 |
| Magnetospirillum magneticum AMB-1 | 0.21 | AMB_RS10750 | | RNA methyltransferase | 0.41 | AMB_RS12295 | | TatD family deoxyribonuclease | low | > 64 |
| Sinorhizobium meliloti 1021 | 0.21 | SMc00482 | | hypothetical protein | 0.37 | SMc01193 | | hypothetical protein | 0.84 | 4 |
| Azospirillum brasilense Sp245 | 0.21 | AZOBR_RS04270 | | RNA methyltransferase | 0.45 | AZOBR_RS08795 | | LuxR family transcriptional regulator | low | > 97 |
| Dinoroseobacter shibae DFL-12 | 0.20 | Dshi_1513 | | tRNA/rRNA methyltransferase (SpoU) (RefSeq) | 0.36 | Dshi_0920 | | hydrolase, TatD family (RefSeq) | low | > 64 |
| Desulfovibrio vulgaris Miyazaki F | 0.20 | DvMF_1155 | | RNA methyltransferase, TrmH family, group 1 (RefSeq) | 0.25 | DvMF_2230 | | hydrolase, TatD family (RefSeq) | low | > 51 |
| Bosea sp. OAE506 | 0.20 | ABIE41_RS13540 | | RNA methyltransferase | 0.35 | ABIE41_RS15945 | | TatD family hydrolase | low | > 77 |
| Caulobacter crescentus NA1000 Δfur | 0.19 | CCNA_02605 | | LasT-family rRNA methylase | 0.28 | CCNA_01898 | | Mg-dependent Dnase TatD | low | > 67 |
| Caulobacter crescentus NA1000 | 0.19 | CCNA_02605 | | LasT-family rRNA methylase | 0.28 | CCNA_01898 | | Mg-dependent Dnase TatD | low | > 66 |
| Sphingomonas koreensis DSMZ 15582 | 0.19 | Ga0059261_1984 | | rRNA methylase | 0.43 | Ga0059261_0126 | | hydrolase, TatD family | low | > 68 |
| Synechococcus elongatus PCC 7942 | 0.18 | Synpcc7942_1602 | | RNA methyltransferase TrmH, group 1 | 0.30 | Synpcc7942_1521 | tatD | Sec-independent protein translocase TatD | low | > 38 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.17 | DVU2737 | | RNA methyltransferase, TrmH family (TIGR) | 0.24 | DVU3202 | | hydrolase, TatD family (TIGR) | low | > 55 |
Not shown: 4 genomes with orthologs for BPHYT_RS12460 only; 16 genomes with orthologs for BPHYT_RS09640 only