| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Burkholderia phytofirmans PsJN | 1.0 | BPHYT_RS33580 | | geranyltranstransferase | 1.0 | BPHYT_RS06985 | | fumarate hydratase | 0.40 | 18 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.96 | H281DRAFT_06016 | | farnesyl-diphosphate synthase | 0.98 | H281DRAFT_04956 | | fumarase, class I, homodimeric | — | — |
| Paraburkholderia graminis OAS925 | 0.95 | ABIE53_004858 | | farnesyl diphosphate synthase | 0.98 | ABIE53_001662 | | fumarate hydratase class I | low | > 113 |
| Paraburkholderia sabiae LMG 24235 | 0.86 | QEN71_RS15235 | | polyprenyl synthetase family protein | 0.97 | QEN71_RS23780 | | fumarate hydratase | — | — |
| Herbaspirillum seropedicae SmR1 | 0.62 | HSERO_RS19130 | | geranyl transferase | 0.82 | HSERO_RS07760 | | fumarate hydratase | — | — |
| Dechlorosoma suillum PS | 0.57 | Dsui_3509 | | geranylgeranyl pyrophosphate synthase | 0.76 | Dsui_2001 | | hydro-lyase, Fe-S type, tartrate/fumarate subfamily,hydro-lyase family enzyme, Fe-S type, tartrate/fumarate subfamily | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.57 | RR42_RS15010 | | geranyl transferase | 0.93 | RR42_RS13905 | | fumarate hydratase | — | — |
| Ralstonia sp. UNC404CL21Col | 0.56 | ABZR87_RS15640 | | polyprenyl synthetase family protein | 0.87 | ABZR87_RS14375 | | fumarate hydratase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.55 | RALBFv3_RS03710 | | (2E,6E)-farnesyl diphosphate synthase | 0.86 | RALBFv3_RS02460 | | fumarate hydratase | — | — |
| Ralstonia solanacearum UW163 | 0.55 | UW163_RS09960 | | (2E,6E)-farnesyl diphosphate synthase | 0.86 | UW163_RS11265 | | fumarate hydratase | — | — |
| Ralstonia solanacearum PSI07 | 0.54 | RPSI07_RS13520 | | polyprenyl synthetase family protein | 0.92 | RPSI07_RS14865 | | fumarate hydratase | — | — |
| Ralstonia solanacearum GMI1000 | 0.52 | RS_RS11155 | | polyprenyl synthetase family protein | 0.86 | RS_RS09830 | | fumarate hydratase | — | — |
| Castellaniella sp019104865 MT123 | 0.52 | ABCV34_RS02230 | | polyprenyl synthetase family protein | 0.75 | ABCV34_RS09450 | | fumarate hydratase | — | — |
| Lysobacter sp. OAE881 | 0.49 | ABIE51_RS06815 | | (2E,6E)-farnesyl diphosphate synthase | 0.77 | ABIE51_RS12620 | | fumarate hydratase | low | > 62 |
| Rhodanobacter sp. FW510-T8 | 0.48 | OKGIIK_10250 | ispA | geranyl transferase | 0.77 | OKGIIK_02115 | ttdA | fumarate hydratase | — | — |
| Erwinia tracheiphila SCR3 | 0.48 | LU632_RS23555 | | polyprenyl synthetase family protein | 0.19 | LU632_RS01205 | | class I fumarate hydratase FumA | low | > 74 |
| Variovorax sp. SCN45 | 0.47 | GFF6129 | | (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10) | 0.77 | GFF483 | | Fumarate hydratase class I, aerobic (EC 4.2.1.2) | low | > 127 |
| Rhodanobacter denitrificans FW104-10B01 | 0.46 | LRK54_RS03365 | | polyprenyl synthetase family protein | 0.77 | LRK54_RS12620 | | fumarate hydratase | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.46 | LRK55_RS03115 | | polyprenyl synthetase family protein | 0.77 | LRK55_RS12360 | | fumarate hydratase | low | > 63 |
| Acidovorax sp. GW101-3H11 | 0.45 | Ac3H11_3565 | | Octaprenyl diphosphate synthase (EC 2.5.1.90) / Dimethylallyltransferase (EC 2.5.1.1) / (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10) / Geranylgeranyl pyrophosphate synthetase (EC 2.5.1.29) | 0.76 | Ac3H11_941 | | Fumarate hydratase class I, aerobic (EC 4.2.1.2) | — | — |
| Variovorax sp. OAS795 | 0.45 | ABID97_RS09275 | | polyprenyl synthetase family protein | 0.77 | ABID97_RS17550 | | fumarate hydratase | low | > 91 |
| Dyella japonica UNC79MFTsu3.2 | 0.45 | ABZR86_RS21690 | | farnesyl diphosphate synthase | 0.78 | ABZR86_RS19555 | | fumarate hydratase | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.44 | Xcc-8004.1890.1 | | hypothetical protein | 0.76 | Xcc-8004.3506.1 | | Fumarate hydratase class I, aerobic (EC 4.2.1.2) | — | — |
| Kangiella aquimarina DSM 16071 | 0.44 | B158DRAFT_1919 | | farnesyl-diphosphate synthase (EC 2.5.1.10) | 0.72 | B158DRAFT_1342 | | fumarase, class I, homodimeric (EC 4.2.1.2) | — | — |
| Marinobacter adhaerens HP15 | 0.44 | HP15_581 | | geranyltranstransferase | 0.72 | HP15_1143 | | hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit | — | — |
| Pseudomonas sp. S08-1 | 0.44 | OH686_15785 | | (2E,6E)-farnesyl diphosphate synthase | 0.75 | OH686_18780 | | Fumarate hydratase class I, aerobic | — | — |
| Pseudomonas putida KT2440 | 0.43 | PP_0528 | | farnesyl diphosphate synthase | 0.76 | PP_0897 | | Fumarate hydratase, class I | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.42 | PfGW456L13_1326 | | Octaprenyl diphosphate synthase (EC 2.5.1.90) / Dimethylallyltransferase (EC 2.5.1.1) / (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10) / Geranylgeranyl diphosphate synthase (EC 2.5.1.29) | 0.76 | PfGW456L13_1808 | | Fumarate hydratase class I, aerobic (EC 4.2.1.2) | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.42 | AO353_06650 | | geranyl transferase | 0.76 | AO353_03795 | | fumarate hydratase | — | — |
| Shewanella loihica PV-4 | 0.42 | Shew_2770 | | polyprenyl synthetase (RefSeq) | 0.71 | Shew_1904 | | tartrate/fumarate subfamily Fe-S type hydro-lyase alpha subunit (RefSeq) | — | — |
| Pseudomonas stutzeri RCH2 | 0.42 | Psest_0642 | | Geranylgeranyl pyrophosphate synthase | 0.76 | Psest_3193 | | hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region/hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.42 | Pf1N1B4_2662 | | Octaprenyl diphosphate synthase (EC 2.5.1.90) / Dimethylallyltransferase (EC 2.5.1.1) / (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10) / Geranylgeranyl pyrophosphate synthetase (EC 2.5.1.29) | 0.76 | Pf1N1B4_683 | | Fumarate hydratase class I, aerobic (EC 4.2.1.2) | — | — |
| Pantoea sp. MT58 | 0.41 | IAI47_14735 | | (2E,6E)-farnesyl diphosphate synthase | 0.18 | IAI47_20435 | | fumarate hydratase | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.41 | Pf6N2E2_4933 | | Octaprenyl-diphosphate synthase (EC 2.5.1.-) / Dimethylallyltransferase (EC 2.5.1.1) / Geranyltranstransferase (farnesyldiphosphate synthase) (EC 2.5.1.10) / Geranylgeranyl pyrophosphate synthetase (EC 2.5.1.29) | 0.76 | Pf6N2E2_5489 | | Fumarate hydratase class I, aerobic (EC 4.2.1.2) | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.41 | GFF5576 | | Octaprenyl diphosphate synthase (EC 2.5.1.90) / Dimethylallyltransferase (EC 2.5.1.1) / (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10) / Geranylgeranyl pyrophosphate synthetase (EC 2.5.1.29) | 0.79 | GFF4099 | | Fumarate hydratase class I, aerobic (EC 4.2.1.2) | — | — |
| Pseudomonas sp. RS175 | 0.41 | PFR28_03936 | | Farnesyl diphosphate synthase | 0.76 | PFR28_03458 | | Fumarate hydratase class I, aerobic | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.41 | Psyr_0605 | | farnesyl-diphosphate synthase | 0.77 | Psyr_4031 | | fumarase | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.41 | Psyr_0605 | | farnesyl-diphosphate synthase | 0.77 | Psyr_4031 | | fumarase | — | — |
| Shewanella oneidensis MR-1 | 0.41 | SO1526 | ispA | geranyltranstransferase (NCBI ptt file) | 0.70 | SO2222 | | fumarate hydratase, class I, anaerobic, putative (NCBI ptt file) | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.40 | CSW01_04565 | | (2E,6E)-farnesyl diphosphate synthase | 0.70 | CSW01_06585 | | fumarate hydratase | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.40 | AO356_14995 | | geranyl transferase | 0.76 | AO356_17810 | | fumarate hydratase | — | — |
| Shewanella amazonensis SB2B | 0.40 | Sama_2435 | | geranyltranstransferase (RefSeq) | 0.70 | Sama_1688 | | fumarate hydratase, class I, anaerobic, putative (RefSeq) | — | — |
| Rahnella sp. WP5 | 0.40 | EX31_RS22160 | | (2E,6E)-farnesyl diphosphate synthase | 0.20 | EX31_RS01160 | | fumarate hydratase | — | — |
| Enterobacter sp. TBS_079 | 0.40 | MPMX20_01012 | | Farnesyl diphosphate synthase | 0.19 | MPMX20_02966 | | Fumarate hydratase class I, anaerobic | — | — |
| Klebsiella michiganensis M5al | 0.40 | BWI76_RS06385 | | (2E,6E)-farnesyl diphosphate synthase | 0.19 | BWI76_RS16275 | | fumarate hydratase FumA | — | — |
| Pectobacterium carotovorum WPP14 | 0.40 | HER17_RS15930 | | (2E,6E)-farnesyl diphosphate synthase | 0.18 | HER17_RS17120 | | fumarate hydratase | — | — |
| Enterobacter asburiae PDN3 | 0.39 | EX28DRAFT_2550 | | Geranylgeranyl pyrophosphate synthase | 0.19 | EX28DRAFT_1609 | | hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region/hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.39 | GFF4325 | | Octaprenyl diphosphate synthase (EC 2.5.1.90) / Dimethylallyltransferase (EC 2.5.1.1) / (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10) / Geranylgeranyl diphosphate synthase (EC 2.5.1.29) | 0.19 | GFF1477 | | Fumarate hydratase class I, anaerobic (EC 4.2.1.2) | — | — |
| Pseudomonas simiae WCS417 | 0.38 | PS417_25200 | | geranyl transferase | 0.77 | PS417_22635 | | fumarate hydratase | — | — |
| Escherichia coli ECRC100 | 0.38 | OKFHMN_08415 | ispA | (2E,6E)-farnesyl diphosphate synthase | 0.19 | OKFHMN_12525 | fumB | class I fumarate hydratase | — | — |
| Escherichia coli ECRC99 | 0.38 | KEDOAH_19550 | ispA | (2E,6E)-farnesyl diphosphate synthase | 0.19 | KEDOAH_15640 | fumB | class I fumarate hydratase | — | — |
| Escherichia coli ECRC102 | 0.38 | NIAGMN_06470 | ispA | (2E,6E)-farnesyl diphosphate synthase | 0.19 | NIAGMN_10370 | fumB | class I fumarate hydratase | — | — |
| Escherichia coli ECRC101 | 0.38 | MCAODC_27640 | ispA | (2E,6E)-farnesyl diphosphate synthase | 0.19 | MCAODC_03035 | fumB | class I fumarate hydratase | — | — |
| Escherichia coli ECRC98 | 0.38 | JDDGAC_12070 | ispA | (2E,6E)-farnesyl diphosphate synthase | 0.19 | JDDGAC_16160 | fumB | class I fumarate hydratase | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.38 | OHPLBJKB_03255 | | Farnesyl diphosphate synthase | 0.19 | OHPLBJKB_03922 | | Fumarate hydratase class I, anaerobic | — | — |
| Escherichia coli Nissle 1917 | 0.38 | ECOLIN_RS02540 | | (2E,6E)-farnesyl diphosphate synthase | 0.20 | ECOLIN_RS23850 | | class I fumarate hydratase | — | — |
| Pseudomonas fluorescens SBW25 | 0.38 | PFLU_RS26840 | | hypothetical protein | 0.77 | PFLU_RS24270 | | fumarate hydratase | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.38 | PFLU_RS26840 | | hypothetical protein | 0.77 | PFLU_RS24270 | | fumarate hydratase | — | — |
| Escherichia coli ECRC62 | 0.38 | BNILDI_22780 | ispA | (2E,6E)-farnesyl diphosphate synthase | 0.19 | BNILDI_16940 | fumB | class I fumarate hydratase | — | — |
| Escherichia coli ECOR38 | 0.38 | HEPCGN_07045 | ispA | (2E,6E)-farnesyl diphosphate synthase | 0.19 | HEPCGN_11160 | fumB | class I fumarate hydratase | — | — |
| Escherichia coli BL21 | 0.38 | ECD_00369 | | geranyltranstransferase | 0.19 | ECD_01581 | | fumarate hydratase (fumarase A), aerobic Class I | — | — |
| Escherichia coli ECOR27 | 0.38 | NOLOHH_01365 | ispA | (2E,6E)-farnesyl diphosphate synthase | 0.19 | NOLOHH_18150 | fumB | class I fumarate hydratase | — | — |
| Escherichia fergusonii Becca | 0.38 | EFB2_03636 | | Farnesyl diphosphate synthase | 0.20 | EFB2_04461 | | Fumarate hydratase class I, anaerobic | — | — |
| Escherichia coli BW25113 | 0.38 | b0421 | ispA | geranyltranstransferase (NCBI) | 0.19 | b1612 | fumA | fumarate hydratase (fumarase A), aerobic Class I (NCBI) | — | — |
| Shewanella sp. ANA-3 | 0.37 | Shewana3_2900 | | farnesyl-diphosphate synthase (RefSeq) | 0.69 | Shewana3_2302 | | fumarase (RefSeq) | — | — |
| Dickeya dianthicola 67-19 | 0.37 | HGI48_RS05595 | | (2E,6E)-farnesyl diphosphate synthase | 0.18 | HGI48_RS04500 | | fumarate hydratase | — | — |
| Acinetobacter radioresistens SK82 | 0.37 | MPMX26_00661 | | Farnesyl diphosphate synthase | 0.74 | MPMX26_00411 | | Fumarate hydratase class I, aerobic | — | — |
| Dickeya dadantii 3937 | 0.37 | DDA3937_RS05535 | | (2E,6E)-farnesyl diphosphate synthase | 0.18 | DDA3937_RS04540 | | fumarate hydratase | — | — |
| Dickeya dianthicola ME23 | 0.37 | DZA65_RS05920 | | (2E,6E)-farnesyl diphosphate synthase | 0.18 | DZA65_RS04420 | | fumarate hydratase | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.37 | Ga0059261_1008 | | Geranylgeranyl pyrophosphate synthase | 0.70 | Ga0059261_3334 | | hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region/hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region | low | > 68 |
| Serratia liquefaciens MT49 | 0.36 | IAI46_04930 | | (2E,6E)-farnesyl diphosphate synthase | 0.19 | IAI46_21370 | | fumarate hydratase | — | — |
| Rhodospirillum rubrum S1H | 0.36 | Rru_A2618 | | Polyprenyl synthetase (NCBI) | 0.20 | Rru_A2206 | | tartrate dehydrogenase (NCBI) | — | — |
| Azospirillum brasilense Sp245 | 0.36 | AZOBR_RS20795 | | farnesyl-diphosphate synthase | 0.20 | AZOBR_RS10315 | | fumarate hydratase | — | — |
| Azospirillum sp. SherDot2 | 0.36 | MPMX19_05065 | | Farnesyl diphosphate synthase | 0.19 | MPMX19_03166 | | Fumarate hydratase class I, aerobic | — | — |
| Rhodopseudomonas palustris CGA009 | 0.34 | TX73_002715 | | polyprenyl synthetase family protein | 0.22 | TX73_020085 | | fumarate hydratase | — | — |
| Alteromonas macleodii MIT1002 | 0.33 | MIT1002_02692 | | Farnesyl diphosphate synthase | 0.71 | MIT1002_02009 | | Fumarate hydratase class I, anaerobic | — | — |
| Magnetospirillum magneticum AMB-1 | 0.29 | AMB_RS14610 | | polyprenyl synthetase family protein | 0.19 | AMB_RS06760 | | fumarate hydratase | — | — |
| Dinoroseobacter shibae DFL-12 | 0.29 | Dshi_3295 | | Polyprenyl synthetase (RefSeq) | 0.58 | Dshi_1426 | | hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit (RefSeq) | low | > 64 |
| Rhizobium sp. OAE497 | 0.29 | ABIE40_RS18720 | | polyprenyl synthetase family protein | 0.21 | ABIE40_RS10550 | | fumarate hydratase | 0.33 | 98 |
| Bosea sp. OAE506 | 0.28 | ABIE41_RS08680 | | polyprenyl synthetase family protein | 0.19 | ABIE41_RS00110 | | fumarate hydratase | — | — |
Not shown: 12 genomes with orthologs for BPHYT_RS33580 only; 5 genomes with orthologs for BPHYT_RS06985 only