Conservation of cofitness between B158DRAFT_0396 and B158DRAFT_1819 in Kangiella aquimarina DSM 16071

81 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Kangiella aquimarina DSM 16071 1.0 B158DRAFT_0396 ribosomal RNA small subunit methyltransferase RsmB 1.0 B158DRAFT_1819 ATPase related to the helicase subunit of the Holliday junction resolvase 0.37 6
Shewanella amazonensis SB2B 0.40 Sama_0041 sun protein (RefSeq) 0.53 Sama_1774 recombination factor protein RarA (RefSeq) low > 62
Shewanella sp. ANA-3 0.40 Shewana3_0033 sun protein (RefSeq) 0.54 Shewana3_2052 recombination factor protein RarA (RefSeq) low > 73
Shewanella oneidensis MR-1 0.39 SO0030 sun sun protein (NCBI ptt file) 0.54 SO2308 ATPase, AAA family (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.39 Shew_3738 sun protein (RefSeq) 0.54 Shew_2022 recombination factor protein RarA (RefSeq) low > 60
Vibrio cholerae E7946 ATCC 55056 0.39 CSW01_00225 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.56 CSW01_05630 replication-associated recombination protein A low > 62
Erwinia tracheiphila SCR3 0.38 LU632_RS22480 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.54 LU632_RS09755 replication-associated recombination protein A low > 74
Pseudomonas stutzeri RCH2 0.37 Psest_0021 ribosomal RNA small subunit methyltransferase RsmB 0.66 Psest_2034 ATPase related to the helicase subunit of the Holliday junction resolvase low > 67
Pantoea sp. MT58 0.36 IAI47_02280 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.55 IAI47_12900 replication-associated recombination protein A low > 76
Dickeya dianthicola ME23 0.36 DZA65_RS20350 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.55 DZA65_RS09930 replication-associated recombination protein A low > 75
Rahnella sp. WP5 0.36 EX31_RS15985 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.56 EX31_RS18515 replication-associated recombination protein A low > 89
Pseudomonas syringae pv. syringae B728a ΔmexB 0.36 Psyr_0017 16S rRNA m(5)C-967 methyltransferase 0.66 Psyr_3177 Recombination protein MgsA low > 86
Dickeya dianthicola 67-19 0.36 HGI48_RS19225 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.55 HGI48_RS09620 replication-associated recombination protein A low > 71
Pseudomonas syringae pv. syringae B728a 0.36 Psyr_0017 16S rRNA m(5)C-967 methyltransferase 0.66 Psyr_3177 Recombination protein MgsA low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.36 GFF2390 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) ## SSU rRNA m5C967 0.56 GFF4896 FIG065221: Holliday junction DNA helicase low > 78
Dickeya dadantii 3937 0.36 DDA3937_RS19135 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.56 DDA3937_RS09605 replication-associated recombination protein A low > 74
Pseudomonas putida KT2440 0.35 PP_0066 Ribosomal RNA small subunit methyltransferase B 0.66 PP_4002 DNA-dependent ATPase required for recombination low > 96
Pseudomonas simiae WCS417 0.35 PS417_00085 16S rRNA methyltransferase 0.65 PS417_16480 recombination factor protein RarA low > 88
Pectobacterium carotovorum WPP14 0.35 HER17_RS02215 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.54 HER17_RS12345 replication-associated recombination protein A low > 75
Pseudomonas fluorescens SBW25-INTG 0.35 PFLU_RS00080 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.65 PFLU_RS18520 replication-associated recombination protein A low > 109
Pseudomonas fluorescens SBW25 0.35 PFLU_RS00080 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.65 PFLU_RS18520 replication-associated recombination protein A low > 109
Escherichia coli BL21 0.35 ECD_03139 16S rRNA m(5)C967 methyltransferase, SAM-dependent 0.56 ECD_00896 recombination intermediate processing DNA-dependent ATPase low > 61
Escherichia coli ECOR27 0.35 NOLOHH_09320 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.56 NOLOHH_22130 rarA replication-associated recombination protein RarA low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.35 OHPLBJKB_00415 Ribosomal RNA small subunit methyltransferase B 0.56 OHPLBJKB_02776 Replication-associated recombination protein A low > 73
Escherichia coli BW25113 0.35 b3289 rsmB 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent (NCBI) 0.56 b0892 ycaJ recombination protein (NCBI) low > 76
Escherichia coli ECRC62 0.35 BNILDI_02200 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.56 BNILDI_20385 rarA replication-associated recombination protein RarA low > 75
Serratia liquefaciens MT49 0.35 IAI46_23275 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.56 IAI46_08570 replication-associated recombination protein A low > 86
Pseudomonas fluorescens FW300-N2C3 0.35 AO356_11275 16S rRNA methyltransferase 0.65 AO356_22185 recombination factor protein RarA low > 104
Pseudomonas fluorescens FW300-N2E2 0.35 Pf6N2E2_4121 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) 0.65 Pf6N2E2_299 FIG065221: Holliday junction DNA helicase low > 103
Escherichia coli ECOR38 0.35 HEPCGN_16350 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.56 HEPCGN_22950 rarA replication-associated recombination protein RarA low > 87
Pseudomonas fluorescens FW300-N2E3 0.35 AO353_10630 16S rRNA methyltransferase 0.65 AO353_27640 recombination factor protein RarA low > 101
Escherichia coli Nissle 1917 0.35 ECOLIN_RS18875 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.56 ECOLIN_RS04745 replication-associated recombination protein RarA low > 55
Escherichia fergusonii Becca 0.35 EFB2_00535 Ribosomal RNA small subunit methyltransferase B 0.56 EFB2_03169 Replication-associated recombination protein A low > 86
Pseudomonas fluorescens FW300-N1B4 0.35 Pf1N1B4_1914 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) 0.65 Pf1N1B4_4062 FIG065221: Holliday junction DNA helicase low > 87
Escherichia coli ECRC98 0.35 JDDGAC_21150 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.56 JDDGAC_09370 rarA replication-associated recombination protein RarA low > 86
Escherichia coli ECRC99 0.35 KEDOAH_10620 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.56 KEDOAH_22175 rarA replication-associated recombination protein RarA — —
Escherichia coli ECRC101 0.35 MCAODC_08050 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.56 MCAODC_24950 rarA replication-associated recombination protein RarA low > 87
Escherichia coli ECRC102 0.35 NIAGMN_15290 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.56 NIAGMN_03280 rarA replication-associated recombination protein RarA — —
Escherichia coli ECRC100 0.35 OKFHMN_17520 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.56 OKFHMN_05560 rarA replication-associated recombination protein RarA low > 80
Pseudomonas sp. RS175 0.35 PFR28_04663 Ribosomal RNA small subunit methyltransferase B 0.65 PFR28_02606 Replication-associated recombination protein A low > 88
Marinobacter adhaerens HP15 0.35 HP15_3742 Fmu, rRNA SAM-dependent methyltransferase 0.59 HP15_1817 recombination factor protein RarA low > 73
Pseudomonas fluorescens GW456-L13 0.35 PfGW456L13_652 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) 0.65 PfGW456L13_2653 FIG065221: Holliday junction DNA helicase low > 87
Klebsiella michiganensis M5al 0.35 BWI76_RS25680 16S rRNA m5C967 methyltransferase 0.57 BWI76_RS09670 recombination factor protein RarA low > 92
Enterobacter sp. TBS_079 0.34 MPMX20_04196 Ribosomal RNA small subunit methyltransferase B 0.56 MPMX20_01554 Replication-associated recombination protein A low > 85
Alteromonas macleodii MIT1002 0.34 MIT1002_00018 Ribosomal RNA small subunit methyltransferase B 0.53 MIT1002_02178 Replication-associated recombination protein A low > 70
Enterobacter asburiae PDN3 0.34 EX28DRAFT_0039 16S rRNA (cytosine(967)-C(5))-methyltransferase 0.57 EX28DRAFT_2040 ATPase related to the helicase subunit of the Holliday junction resolvase low > 76
Rhodanobacter sp. FW510-T8 0.34 OKGIIK_13790 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.52 OKGIIK_07580 rarA recombination factor protein RarA low > 52
Dyella japonica UNC79MFTsu3.2 0.34 ABZR86_RS13890 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.52 ABZR86_RS01825 replication-associated recombination protein A low > 74
Pseudomonas sp. S08-1 0.34 OH686_12525 16S rRNA (cytosine(967)-C(5))-methyltransferase 0.66 OH686_00270 Replication-associated recombination protein RarA low > 80
Dechlorosoma suillum PS 0.32 Dsui_0812 ribosomal RNA small subunit methyltransferase RsmB 0.54 Dsui_1694 AAA ATPase low > 51
Acinetobacter radioresistens SK82 0.31 MPMX26_03021 Ribosomal RNA small subunit methyltransferase B 0.38 MPMX26_02987 Replication-associated recombination protein A low > 36
Xanthomonas campestris pv. campestris strain 8004 0.30 Xcc-8004.4741.1 hypothetical protein 0.53 Xcc-8004.2744.1 FIG065221: Holliday junction DNA helicase low > 74
Rhodanobacter denitrificans FW104-10B01 0.30 LRK54_RS10125 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.52 LRK54_RS17320 replication-associated recombination protein A low > 59
Rhodanobacter denitrificans MT42 0.30 LRK55_RS09765 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.51 LRK55_RS17545 replication-associated recombination protein A low > 63
Lysobacter sp. OAE881 0.30 ABIE51_RS02255 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.49 ABIE51_RS11445 replication-associated recombination protein A low > 62
Castellaniella sp019104865 MT123 0.29 ABCV34_RS14225 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.54 ABCV34_RS07220 replication-associated recombination protein A low > 48
Ralstonia sp. UNC404CL21Col 0.29 ABZR87_RS04950 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.56 ABZR87_RS16030 replication-associated recombination protein A low > 80
Hydrogenophaga sp. GW460-11-11-14-LB1 0.29 GFF1789 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) 0.45 GFF777 FIG065221: Holliday junction DNA helicase low > 90
Ralstonia solanacearum PSI07 0.28 RPSI07_RS23575 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.56 RPSI07_RS13205 replication-associated recombination protein A low > 81
Ralstonia solanacearum UW163 0.27 UW163_RS03790 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.56 UW163_RS09525 replication-associated recombination protein A — —
Ralstonia solanacearum IBSBF1503 0.27 RALBFv3_RS09790 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.56 RALBFv3_RS04145 replication-associated recombination protein A low > 76
Variovorax sp. SCN45 0.26 GFF5878 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) 0.53 GFF6034 Replication-associated recombination protein RarA low > 127
Paraburkholderia bryophila 376MFSha3.1 0.26 H281DRAFT_02237 16S rRNA (cytosine967-C5)-methyltransferase 0.55 H281DRAFT_00180 Recombination protein MgsA low > 103
Acidovorax sp. GW101-3H11 0.26 Ac3H11_4461 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) 0.53 Ac3H11_1696 FIG065221: Holliday junction DNA helicase low > 79
Ralstonia solanacearum GMI1000 0.26 RS_RS00375 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.55 RS_RS11735 replication-associated recombination protein A low > 80
Variovorax sp. OAS795 0.25 ABID97_RS05360 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.53 ABID97_RS07835 replication-associated recombination protein A low > 91
Cupriavidus basilensis FW507-4G11 0.24 RR42_RS20450 16S rRNA methyltransferase 0.56 RR42_RS04355 recombination factor protein RarA low > 128
Azospirillum brasilense Sp245 0.22 AZOBR_RS00235 MFS transporter 0.47 AZOBR_RS06885 ATPase AAA low > 97
Azospirillum sp. SherDot2 0.22 MPMX19_02327 Ribosomal RNA small subunit methyltransferase B 0.47 MPMX19_01528 Replication-associated recombination protein A low > 112
Bosea sp. OAE506 0.20 ABIE41_RS05105 RsmB/NOP family class I SAM-dependent RNA methyltransferase 0.43 ABIE41_RS14690 replication-associated recombination protein A low > 77
Rhizobium sp. OAE497 0.19 ABIE40_RS19140 RsmB/NOP family class I SAM-dependent RNA methyltransferase 0.44 ABIE40_RS08045 replication-associated recombination protein A low > 107
Rhodopseudomonas palustris CGA009 0.19 TX73_000155 transcription antitermination factor NusB 0.46 TX73_016655 replication-associated recombination protein A low > 86
Sinorhizobium meliloti 1021 0.19 SMc04090 sun protein 0.46 SMc01279 recombination factor protein RarA low > 103
Caulobacter crescentus NA1000 0.19 CCNA_00101 16S rRNA m5C methyltransferase RsmB 0.44 CCNA_01342 ATPase, AAA family low > 66
Caulobacter crescentus NA1000 Δfur 0.19 CCNA_00101 16S rRNA m5C methyltransferase RsmB 0.44 CCNA_01342 ATPase, AAA family low > 67
Agrobacterium fabrum C58 0.18 Atu2825 Sun protein 0.46 Atu1914 ATPase, AAA family protein low > 89
Dinoroseobacter shibae DFL-12 0.18 Dshi_3033 Fmu (Sun) domain protein (RefSeq) 0.45 Dshi_0313 AAA ATPase central domain protein (RefSeq) low > 64
Fusobacterium nucleatum SB010 0.18 HUW76_07955 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.31 HUW76_02735 replication-associated recombination protein A low > 35
Brevundimonas sp. GW460-12-10-14-LB2 0.16 A4249_RS13165 RsmB/NOP family class I SAM-dependent RNA methyltransferase 0.46 A4249_RS07890 replication-associated recombination protein A low > 48
Desulfovibrio vulgaris Hildenborough JW710 0.14 DVU3363 sun sun protein (TIGR) 0.31 DVU1686 ATPase, AAA family (TIGR) low > 55
Desulfovibrio vulgaris Miyazaki F 0.14 DvMF_2042 NusB/RsmB/TIM44 (RefSeq) 0.30 DvMF_0339 recombination factor protein RarA (RefSeq) low > 51
Mycobacterium tuberculosis H37Rv 0.12 Rv1407 Probable Fmu protein (sun protein) 0.35 Rv2559c Conserved hypothetical alanine leucine valine rich protein low > 58

Not shown: 2 genomes with orthologs for B158DRAFT_0396 only; 18 genomes with orthologs for B158DRAFT_1819 only