| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Kangiella aquimarina DSM 16071 | 1.0 | B158DRAFT_2532 | | Pseudouridylate synthases, 23S RNA-specific | 1.0 | B158DRAFT_1419 | | citrate synthase (EC 2.3.3.1) | 0.84 | 2 |
| Dickeya dadantii 3937 | 0.55 | DDA3937_RS16110 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.68 | DDA3937_RS06435 | | citrate synthase | — | — |
| Escherichia coli ECOR38 | 0.55 | HEPCGN_20375 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.68 | HEPCGN_01275 | gltA | citrate synthase | low | > 87 |
| Dickeya dianthicola ME23 | 0.55 | DZA65_RS17330 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.68 | DZA65_RS06820 | | citrate synthase | low | > 75 |
| Dickeya dianthicola 67-19 | 0.55 | HGI48_RS16235 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.68 | HGI48_RS06475 | | citrate synthase | low | > 71 |
| Shewanella loihica PV-4 | 0.55 | Shew_2950 | | RluA family pseudouridine synthase (RefSeq) | 0.68 | Shew_1650 | gltA | type II citrate synthase (RefSeq) | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.55 | OHPLBJKB_01112 | | Ribosomal large subunit pseudouridine synthase D | 0.68 | OHPLBJKB_02997 | | Citrate synthase | low | > 73 |
| Escherichia fergusonii Becca | 0.55 | EFB2_01296 | | Ribosomal large subunit pseudouridine synthase D | 0.68 | EFB2_03386 | | Citrate synthase | low | > 86 |
| Escherichia coli BL21 | 0.55 | ECD_02484 | | 23S rRNA pseudouridine(1911,1915,1917) synthase | 0.68 | ECD_00680 | | citrate synthase | low | > 61 |
| Escherichia coli BW25113 | 0.55 | b2594 | rluD | 23S rRNA pseudouridine synthase (NCBI) | 0.68 | b0720 | gltA | citrate synthase (NCBI) | — | — |
| Escherichia coli Nissle 1917 | 0.55 | ECOLIN_RS14675 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.68 | ECOLIN_RS03835 | | citrate synthase | low | > 55 |
| Escherichia coli ECRC98 | 0.55 | JDDGAC_24915 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.68 | JDDGAC_10615 | gltA | citrate synthase | low | > 86 |
| Escherichia coli ECRC101 | 0.55 | MCAODC_11780 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.68 | MCAODC_26180 | gltA | citrate synthase | low | > 87 |
| Escherichia coli ECRC100 | 0.55 | OKFHMN_21250 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.68 | OKFHMN_06960 | gltA | citrate synthase | low | > 80 |
| Escherichia coli ECRC99 | 0.55 | KEDOAH_06970 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.68 | KEDOAH_21005 | gltA | citrate synthase | — | — |
| Escherichia coli ECRC102 | 0.55 | NIAGMN_19020 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.68 | NIAGMN_05010 | gltA | citrate synthase | — | — |
| Escherichia coli ECRC62 | 0.54 | BNILDI_11730 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.68 | BNILDI_21340 | gltA | citrate synthase | low | > 75 |
| Escherichia coli ECOR27 | 0.54 | NOLOHH_12925 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.68 | NOLOHH_23345 | gltA | citrate synthase | low | > 75 |
| Shewanella sp. ANA-3 | 0.54 | Shewana3_3171 | | ribosomal large subunit pseudouridine synthase D (RefSeq) | 0.69 | Shewana3_1705 | gltA | type II citrate synthase (RefSeq) | low | > 73 |
| Pseudomonas stutzeri RCH2 | 0.54 | Psest_0709 | | pseudouridine synthase, RluA family | 0.68 | Psest_2499 | | citrate synthase I (hexameric type) | — | — |
| Serratia liquefaciens MT49 | 0.54 | IAI46_03985 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.68 | IAI46_06250 | | citrate synthase | low | > 86 |
| Marinobacter adhaerens HP15 | 0.53 | HP15_527 | | pseudouridine synthase, RluA family | 0.69 | HP15_1516 | | type II citrate synthase | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.53 | PFLU_RS03870 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.69 | PFLU_RS08930 | | citrate (Si)-synthase | — | — |
| Pseudomonas fluorescens SBW25 | 0.53 | PFLU_RS03870 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.69 | PFLU_RS08930 | | citrate (Si)-synthase | — | — |
| Erwinia tracheiphila SCR3 | 0.53 | LU632_RS16945 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.68 | LU632_RS16120 | | citrate synthase | low | > 74 |
| Alteromonas macleodii MIT1002 | 0.53 | MIT1002_02679 | | Ribosomal large subunit pseudouridine synthase D | 0.68 | MIT1002_01943 | | Citrate synthase | — | — |
| Pseudomonas simiae WCS417 | 0.53 | PS417_03820 | | ribosomal large subunit pseudouridine synthase D | 0.68 | PS417_08870 | | type II citrate synthase | — | — |
| Pectobacterium carotovorum WPP14 | 0.53 | HER17_RS05400 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.68 | HER17_RS14955 | | citrate synthase | low | > 75 |
| Pantoea sp. MT58 | 0.53 | IAI47_04425 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.67 | IAI47_13770 | | citrate synthase | low | > 76 |
| Enterobacter asburiae PDN3 | 0.53 | EX28DRAFT_2695 | | pseudouridine synthase, RluA family | 0.68 | EX28DRAFT_2272 | | citrate synthase (EC 2.3.3.1) | low | > 76 |
| Pseudomonas fluorescens FW300-N2E3 | 0.53 | AO353_14220 | | ribosomal large subunit pseudouridine synthase D | 0.68 | AO353_01860 | | type II citrate synthase | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.53 | AO356_15925 | | ribosomal large subunit pseudouridine synthase D | 0.68 | AO356_19670 | | type II citrate synthase | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.53 | PfGW456L13_1493 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.69 | PfGW456L13_4274 | | Citrate synthase (si) (EC 2.3.3.1) | — | — |
| Klebsiella michiganensis M5al | 0.53 | BWI76_RS21450 | | 23S rRNA pseudouridine(1911/1915/1917) synthase | 0.68 | BWI76_RS08385 | | citrate (Si)-synthase | low | > 92 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.53 | GFF4182 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.68 | GFF4634 | | Citrate synthase (si) (EC 2.3.3.1) | low | > 78 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.52 | Psyr_0726 | | ribosomal large subunit pseudouridine synthase D | 0.68 | Psyr_2004 | | citrate synthase | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.52 | Psyr_0726 | | ribosomal large subunit pseudouridine synthase D | 0.68 | Psyr_2004 | | citrate synthase | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.52 | Pf1N1B4_2822 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.68 | Pf1N1B4_3676 | | Citrate synthase (si) (EC 2.3.3.1) | — | — |
| Rahnella sp. WP5 | 0.52 | EX31_RS07570 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.67 | EX31_RS23415 | | citrate synthase | low | > 89 |
| Pseudomonas sp. RS175 | 0.52 | PFR28_03748 | | Ribosomal large subunit pseudouridine synthase D | 0.68 | PFR28_03101 | | Citrate synthase | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.52 | Pf6N2E2_5127 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.68 | Pf6N2E2_5850 | | Citrate synthase (si) (EC 2.3.3.1) | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.52 | CSW01_03695 | | ribosomal large subunit pseudouridine synthase D | 0.69 | CSW01_10455 | | citrate synthase | low | > 62 |
| Shewanella amazonensis SB2B | 0.52 | Sama_2605 | | pseudouridylate synthase (RefSeq) | 0.71 | Sama_1422 | gltA | type II citrate synthase (RefSeq) | — | — |
| Enterobacter sp. TBS_079 | 0.52 | MPMX20_03463 | | Ribosomal large subunit pseudouridine synthase D | 0.68 | MPMX20_01349 | | Citrate synthase | low | > 85 |
| Pseudomonas putida KT2440 | 0.52 | PP_0623 | | 23S rRNA pseudouridine(1911,1915,1917) synthase | 0.69 | PP_4194 | | citrate synthase | — | — |
| Pseudomonas sp. S08-1 | 0.51 | OH686_16410 | | LSU rRNA pseudouridine(1911/1915/1917) synthase | 0.68 | OH686_01995 | | citrate (Si)-synthase | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.48 | Xcc-8004.1362.1 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.60 | Xcc-8004.1199.1 | | Citrate synthase (si) (EC 2.3.3.1) | — | — |
| Lysobacter sp. OAE881 | 0.47 | ABIE51_RS04885 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.59 | ABIE51_RS17200 | | citrate synthase | low | > 62 |
| Dyella japonica UNC79MFTsu3.2 | 0.45 | ABZR86_RS10965 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.59 | ABZR86_RS11825 | | citrate synthase | 0.47 | 16 |
| Rhodanobacter denitrificans FW104-10B01 | 0.44 | LRK54_RS04965 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.58 | LRK54_RS11820 | | citrate synthase | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.44 | LRK55_RS04745 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.58 | LRK55_RS11545 | | citrate synthase | low | > 63 |
| Rhodanobacter sp. FW510-T8 | 0.43 | OKGIIK_01790 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.59 | OKGIIK_12075 | | citrate synthase | — | — |
| Acinetobacter radioresistens SK82 | 0.43 | MPMX26_00735 | | Ribosomal large subunit pseudouridine synthase D | 0.64 | MPMX26_00746 | | Citrate synthase | — | — |
| Ralstonia solanacearum GMI1000 | 0.40 | RS_RS08205 | | RluA family pseudouridine synthase | 0.62 | RS_RS10005 | | citrate (Si)-synthase | — | — |
| Ralstonia solanacearum PSI07 | 0.40 | RPSI07_RS15970 | | RluA family pseudouridine synthase | 0.63 | RPSI07_RS14690 | | citrate (Si)-synthase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.40 | RALBFv3_RS01520 | | RluA family pseudouridine synthase | 0.63 | RALBFv3_RS02625 | | citrate (Si)-synthase | — | — |
| Ralstonia solanacearum UW163 | 0.40 | UW163_RS14830 | | RluA family pseudouridine synthase | 0.63 | UW163_RS11100 | | citrate (Si)-synthase | — | — |
| Ralstonia sp. UNC404CL21Col | 0.39 | ABZR87_RS13315 | | RluA family pseudouridine synthase | 0.65 | ABZR87_RS14545 | | citrate synthase | — | — |
| Rhodospirillum rubrum S1H | 0.37 | Rru_A1111 | | Pseudouridine synthase, RluD (NCBI) | 0.66 | Rru_A1600 | | Citrate synthase I (NCBI) | — | — |
| Rhizobium sp. OAE497 | 0.35 | ABIE40_RS14790 | | RluA family pseudouridine synthase | 0.18 | ABIE40_RS09610 | | citrate synthase/methylcitrate synthase | low | > 107 |
| Sinorhizobium meliloti 1021 | 0.35 | SMc00647 | | ribosomal large subunit pseudouridine synthase | 0.69 | SMc02087 | | type II citrate synthase | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.35 | Ga0059261_0664 | | pseudouridine synthase, RluA family | 0.68 | Ga0059261_0941 | | citrate synthase (EC 2.3.3.1) | — | — |
| Azospirillum sp. SherDot2 | 0.35 | MPMX19_05442 | | Ribosomal large subunit pseudouridine synthase D | 0.67 | MPMX19_01007 | | Citrate synthase | low | > 112 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.34 | Echvi_0642 | | pseudouridine synthase, RluA family | 0.52 | Echvi_3057 | | citrate synthase I (hexameric type) | 0.41 | 51 |
| Rhodopseudomonas palustris CGA009 | 0.34 | TX73_001905 | | RluA family pseudouridine synthase | 0.67 | TX73_015065 | | citrate synthase | — | — |
| Phaeobacter inhibens DSM 17395 | 0.33 | PGA1_c09000 | | ribosomal large subunit pseudouridine synthase D | 0.72 | PGA1_c16970 | | citrate synthase GltA | — | — |
| Agrobacterium fabrum C58 | 0.33 | Atu2443 | | ribosomal large subunit pseudouridine synthase, RluD subfamily | 0.70 | Atu1392 | | citrate synthase | — | — |
| Synechococcus elongatus PCC 7942 | 0.33 | Synpcc7942_1112 | | ribosomal large subunit pseudouridine synthase D | 0.30 | Synpcc7942_0612 | gltA | methylcitrate synthase | — | — |
| Phocaeicola vulgatus CL09T03C04 | 0.33 | HMPREF1058_RS08615 | | RluA family pseudouridine synthase | 0.19 | HMPREF1058_RS14335 | | citrate/2-methylcitrate synthase | low | > 67 |
| Phocaeicola dorei CL03T12C01 | 0.33 | ABI39_RS02845 | | RluA family pseudouridine synthase | 0.19 | ABI39_RS09965 | | citrate/2-methylcitrate synthase | low | > 72 |
| Bosea sp. OAE506 | 0.32 | ABIE41_RS05635 | | RluA family pseudouridine synthase | 0.68 | ABIE41_RS17520 | | citrate synthase | — | — |
| Magnetospirillum magneticum AMB-1 | 0.32 | AMB_RS16095 | | RluA family pseudouridine synthase | 0.65 | AMB_RS14105 | | citrate (Si)-synthase | — | — |
| Castellaniella sp019104865 MT123 | 0.32 | ABCV34_RS01885 | | RluA family pseudouridine synthase | 0.66 | ABCV34_RS01710 | | citrate synthase | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.31 | GFF4870 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.65 | GFF3365 | | Citrate synthase (si) (EC 2.3.3.1) | — | — |
| Variovorax sp. SCN45 | 0.30 | GFF988 | | LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23) | 0.66 | GFF3894 | | Citrate synthase (si) (EC 2.3.3.1) | — | — |
| Caulobacter crescentus NA1000 | 0.30 | CCNA_00485 | | ribosomal large subunit pseudouridine synthase D | 0.65 | CCNA_01983 | | citrate synthase | — | — |
| Caulobacter crescentus NA1000 Δfur | 0.30 | CCNA_00485 | | ribosomal large subunit pseudouridine synthase D | 0.65 | CCNA_01983 | | citrate synthase | — | — |
| Acidovorax sp. GW101-3H11 | 0.30 | Ac3H11_1787 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.64 | Ac3H11_3161 | | Citrate synthase (si) (EC 2.3.3.1) | — | — |
| Dinoroseobacter shibae DFL-12 | 0.30 | Dshi_2610 | | pseudouridine synthase, RluA family (RefSeq) | 0.68 | Dshi_1806 | | citrate synthase I (RefSeq) | — | — |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.29 | CA264_15205 | | RNA pseudouridine synthase | 0.54 | CA264_07120 | | citrate (Si)-synthase | — | — |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.29 | CA265_RS14415 | | pseudouridine synthase | 0.49 | CA265_RS08845 | | citrate (Si)-synthase | — | — |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.29 | ABZR88_RS03985 | | RluA family pseudouridine synthase | 0.49 | ABZR88_RS03955 | | citrate synthase | — | — |
| Variovorax sp. OAS795 | 0.28 | ABID97_RS14190 | | RluA family pseudouridine synthase | 0.65 | ABID97_RS08480 | | citrate synthase | low | > 91 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.27 | A4249_RS10060 | | RluA family pseudouridine synthase | 0.67 | A4249_RS06195 | | citrate synthase | — | — |
| Mycobacterium tuberculosis H37Rv | 0.20 | Rv1540 | | Conserved hypothetical protein member of yabO/yceC/yfiI family | 0.54 | Rv0896 | | Probable citrate synthase I GltA2 | — | — |
| Bifidobacterium breve UCC2003 | 0.19 | BBR_RS17135 | | RluA family pseudouridine synthase | 0.45 | BBR_RS17995 | | citrate synthase | low | > 34 |
Not shown: 7 genomes with orthologs for B158DRAFT_2532 only; 9 genomes with orthologs for B158DRAFT_1419 only