| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Agrobacterium fabrum C58 | 1.0 | Atu0085 | | tRNA pseudouridine 55 synthase | 1.0 | Atu2125 | | ABC transporter, nucleotide binding/ATPase protein | 0.31 | 2 |
| Rhizobium sp. OAE497 | 0.83 | ABIE40_RS00345 | | tRNA pseudouridine(55) synthase TruB | 0.86 | ABIE40_RS11960 | | energy-dependent translational throttle protein EttA | low | > 107 |
| Sinorhizobium meliloti 1021 | 0.80 | SMc00321 | | tRNA pseudouridine synthase B | 0.87 | SMc04454 | | ABC transporter ATP-binding protein | low | > 103 |
| Rhodopseudomonas palustris CGA009 | 0.53 | TX73_002255 | | tRNA pseudouridine(55) synthase TruB | 0.76 | TX73_018705 | | energy-dependent translational throttle protein EttA | 0.54 | 33 |
| Bosea sp. OAE506 | 0.52 | ABIE41_RS04565 | | tRNA pseudouridine(55) synthase TruB | 0.74 | ABIE41_RS12400 | | energy-dependent translational throttle protein EttA | low | > 77 |
| Dinoroseobacter shibae DFL-12 | 0.45 | Dshi_3042 | | tRNA pseudouridine synthase B (RefSeq) | 0.74 | Dshi_2197 | | ABC transporter related (RefSeq) | 0.41 | 9 |
| Azospirillum sp. SherDot2 | 0.44 | MPMX19_02524 | | tRNA pseudouridine synthase B | 0.66 | MPMX19_00626 | | Energy-dependent translational throttle protein EttA | 0.73 | 22 |
| Magnetospirillum magneticum AMB-1 | 0.44 | AMB_RS20810 | | tRNA pseudouridine(55) synthase TruB | 0.67 | AMB_RS04455 | | energy-dependent translational throttle protein EttA | low | > 64 |
| Phaeobacter inhibens DSM 17395 | 0.43 | PGA1_c32950 | | tRNA pseudouridine synthase B | 0.69 | PGA1_c26300 | | ABC transporter, ATP-binding protein | low | > 62 |
| Caulobacter crescentus NA1000 | 0.43 | CCNA_00035 | | tRNA pseudouridine synthase B | 0.66 | CCNA_02231 | | ABC transporter ATP-binding protein | — | — |
| Caulobacter crescentus NA1000 Δfur | 0.43 | CCNA_00035 | | tRNA pseudouridine synthase B | 0.66 | CCNA_02231 | | ABC transporter ATP-binding protein | — | — |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.42 | A4249_RS13345 | | tRNA pseudouridine(55) synthase TruB | 0.64 | A4249_RS07905 | | energy-dependent translational throttle protein EttA | — | — |
| Rhodospirillum rubrum S1H | 0.40 | Rru_A3783 | | tRNA pseudouridine synthase B (NCBI) | 0.68 | Rru_A1527 | | ABC transporter component (NCBI) | 0.61 | 15 |
| Pseudomonas simiae WCS417 | 0.34 | PS417_23960 | | pseudouridine synthase | 0.55 | PS417_24265 | | ABC transporter ATP-binding protein | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.33 | Psyr_4178 | | tRNA pseudouridine synthase B | 0.56 | Psyr_4264 | | ABC transporter | 0.52 | 6 |
| Pseudomonas syringae pv. syringae B728a | 0.33 | Psyr_4178 | | tRNA pseudouridine synthase B | 0.56 | Psyr_4264 | | ABC transporter | low | > 86 |
| Pseudomonas stutzeri RCH2 | 0.33 | Psest_0983 | | tRNA pseudouridine 55 synthase | 0.56 | Psest_3433 | | ATP-binding cassette protein, ChvD family | — | — |
| Pseudomonas sp. S08-1 | 0.33 | OH686_17155 | | tRNA pseudouridine(55) synthase | 0.57 | OH686_16240 | | Energy-dependent translational throttle protein EttA | 0.69 | 47 |
| Pseudomonas fluorescens FW300-N2E3 | 0.33 | AO353_05550 | | pseudouridine synthase | 0.55 | AO353_14030 | | ABC transporter ATP-binding protein | 0.34 | 10 |
| Pseudomonas fluorescens GW456-L13 | 0.33 | PfGW456L13_5086 | | tRNA pseudouridine synthase B (EC 4.2.1.70) | 0.55 | PfGW456L13_1453 | | Glutathione-regulated potassium-efflux system ATP-binding protein | 0.39 | 27 |
| Pseudomonas fluorescens FW300-N2C3 | 0.33 | AO356_07400 | | pseudouridine synthase | 0.56 | AO356_15735 | | ABC transporter ATP-binding protein | 0.47 | 4 |
| Pseudomonas fluorescens SBW25-INTG | 0.33 | PFLU_RS25800 | | tRNA pseudouridine(55) synthase TruB | 0.55 | PFLU_RS26180 | | energy-dependent translational throttle protein EttA | 0.30 | 51 |
| Pseudomonas fluorescens SBW25 | 0.33 | PFLU_RS25800 | | tRNA pseudouridine(55) synthase TruB | 0.55 | PFLU_RS26180 | | energy-dependent translational throttle protein EttA | low | > 109 |
| Pseudomonas putida KT2440 | 0.33 | PP_4710 | | tRNA pseudouridine 55 synthase | 0.56 | PP_0674 | | ADP/ATP ratio sensor and inhibitor of translation | 0.55 | 2 |
| Pseudomonas sp. RS175 | 0.33 | PFR28_00092 | | tRNA pseudouridine synthase B | 0.56 | PFR28_03784 | | Energy-dependent translational throttle protein EttA | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.33 | Pf6N2E2_3351 | | tRNA pseudouridine synthase B (EC 4.2.1.70) | 0.56 | Pf6N2E2_5084 | | Glutathione-regulated potassium-efflux system ATP-binding protein | 0.27 | 90 |
| Paraburkholderia graminis OAS925 | 0.32 | ABIE53_001832 | | tRNA pseudouridine55 synthase | 0.57 | ABIE53_003656 | | sulfate-transporting ATPase | low | > 113 |
| Kangiella aquimarina DSM 16071 | 0.32 | B158DRAFT_0108 | | tRNA pseudouridine 55 synthase | 0.57 | B158DRAFT_0881 | | ATP-binding cassette protein, ChvD family | 0.78 | 18 |
| Rhodanobacter denitrificans MT42 | 0.32 | LRK55_RS00810 | | tRNA pseudouridine(55) synthase TruB | 0.59 | LRK55_RS04405 | | energy-dependent translational throttle protein EttA | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.32 | LRK54_RS01035 | | tRNA pseudouridine(55) synthase TruB | 0.59 | LRK54_RS04630 | | energy-dependent translational throttle protein EttA | low | > 59 |
| Burkholderia phytofirmans PsJN | 0.31 | BPHYT_RS08080 | | tRNA pseudouridine synthase B | 0.56 | BPHYT_RS17480 | | ABC transporter ATP-binding protein | low | > 109 |
| Dechlorosoma suillum PS | 0.31 | Dsui_2720 | | tRNA pseudouridine 55 synthase | 0.56 | Dsui_2746 | | ATP-binding cassette protein, ChvD family | low | > 51 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.31 | H281DRAFT_05106 | | tRNA pseudouridine synthase B | 0.57 | H281DRAFT_05699 | | sulfate-transporting ATPase | low | > 103 |
| Alteromonas macleodii MIT1002 | 0.31 | MIT1002_01773 | | tRNA pseudouridine synthase B | 0.55 | MIT1002_02704 | | putative ABC transporter ATP-binding protein | low | > 70 |
| Rhodanobacter sp. FW510-T8 | 0.31 | OKGIIK_05860 | truB | tRNA pseudouridine(55) synthase TruB | 0.58 | OKGIIK_11445 | ettA | energy-dependent translational throttle protein EttA | low | > 52 |
| Paraburkholderia sabiae LMG 24235 | 0.30 | QEN71_RS23090 | | tRNA pseudouridine(55) synthase TruB | 0.57 | QEN71_RS27625 | | energy-dependent translational throttle protein EttA | low | > 153 |
| Sphingomonas koreensis DSMZ 15582 | 0.30 | Ga0059261_2142 | | tRNA pseudouridine(55) synthase | 0.65 | Ga0059261_0048 | | ATP-binding cassette protein, ChvD family | — | — |
| Shewanella loihica PV-4 | 0.29 | Shew_2825 | | tRNA pseudouridine synthase B (RefSeq) | 0.55 | Shew_1183 | | putative ABC transporter ATP-binding protein (RefSeq) | low | > 60 |
| Acinetobacter radioresistens SK82 | 0.29 | MPMX26_02778 | | tRNA pseudouridine synthase B | 0.54 | MPMX26_02832 | | Energy-dependent translational throttle protein EttA | 0.67 | 21 |
| Pectobacterium carotovorum WPP14 | 0.29 | HER17_RS18200 | | tRNA pseudouridine(55) synthase TruB | 0.56 | HER17_RS02745 | | energy-dependent translational throttle protein EttA | low | > 75 |
| Vibrio cholerae E7946 ATCC 55056 | 0.29 | CSW01_03400 | | tRNA pseudouridine(55) synthase TruB | 0.55 | CSW01_03650 | | energy-dependent translational throttle protein EttA | low | > 62 |
| Cupriavidus basilensis FW507-4G11 | 0.28 | RR42_RS12835 | | tRNA pseudouridine synthase B | 0.56 | RR42_RS18575 | | ABC transporter ATP-binding protein | low | > 128 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.28 | Xcc-8004.2004.1 | | tRNA pseudouridine synthase B (EC 4.2.1.70) | 0.53 | Xcc-8004.4400.1 | | ABC transporter, ATP-binding protein | — | — |
| Pantoea sp. MT58 | 0.28 | IAI47_17015 | | tRNA pseudouridine(55) synthase TruB | 0.56 | IAI47_16325 | | energy-dependent translational throttle protein EttA | low | > 76 |
| Dickeya dadantii 3937 | 0.28 | DDA3937_RS03080 | | tRNA pseudouridine(55) synthase TruB | 0.58 | DDA3937_RS18460 | | energy-dependent translational throttle protein EttA | 0.87 | 2 |
| Escherichia coli ECRC101 | 0.28 | MCAODC_08645 | truB | tRNA pseudouridine(55) synthase TruB | 0.56 | MCAODC_01690 | ettA | energy-dependent translational throttle protein EttA | — | — |
| Escherichia coli BL21 | 0.28 | ECD_03033 | | tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase | 0.56 | ECD_04267 | | energy-dependent translational throttle A | 0.85 | 28 |
| Escherichia coli ECOR38 | 0.28 | HEPCGN_17000 | truB | tRNA pseudouridine(55) synthase TruB | 0.56 | HEPCGN_09180 | ettA | energy-dependent translational throttle protein EttA | 0.92 | 44 |
| Escherichia coli ECRC98 | 0.28 | JDDGAC_21750 | truB | tRNA pseudouridine(55) synthase TruB | 0.56 | JDDGAC_14770 | ettA | energy-dependent translational throttle protein EttA | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.28 | OHPLBJKB_00534 | | tRNA pseudouridine synthase B | 0.56 | OHPLBJKB_03670 | | Energy-dependent translational throttle protein EttA | low | > 73 |
| Escherichia coli ECRC99 | 0.28 | KEDOAH_10025 | truB | tRNA pseudouridine(55) synthase TruB | 0.56 | KEDOAH_16980 | ettA | energy-dependent translational throttle protein EttA | — | — |
| Escherichia coli ECRC102 | 0.28 | NIAGMN_15885 | truB | tRNA pseudouridine(55) synthase TruB | 0.56 | NIAGMN_09025 | ettA | energy-dependent translational throttle protein EttA | — | — |
| Shewanella amazonensis SB2B | 0.28 | Sama_0963 | | pseudouridylate synthase (RefSeq) | 0.55 | Sama_1013 | | putative ABC transporter ATP-binding protein (RefSeq) | 0.45 | 43 |
| Escherichia coli BW25113 | 0.28 | b3166 | truB | tRNA pseudouridine synthase B (NCBI) | 0.56 | b4391 | yjjK | fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI) | 0.50 | 1 |
| Escherichia coli ECRC101 | 0.28 | OKFHMN_18125 | truB | tRNA pseudouridine(55) synthase TruB | 0.56 | OKFHMN_11175 | ettA | energy-dependent translational throttle protein EttA | — | — |
| Escherichia coli Nissle 1917 | 0.28 | ECOLIN_RS18185 | | tRNA pseudouridine(55) synthase TruB | 0.56 | ECOLIN_RS25205 | | energy-dependent translational throttle protein EttA | low | > 52 |
| Escherichia fergusonii Becca | 0.27 | EFB2_00657 | | tRNA pseudouridine synthase B | 0.56 | EFB2_04053 | | Energy-dependent translational throttle protein EttA | low | > 86 |
| Lysobacter sp. OAE881 | 0.27 | ABIE51_RS08405 | | tRNA pseudouridine(55) synthase TruB | 0.55 | ABIE51_RS04610 | | energy-dependent translational throttle protein EttA | — | — |
| Erwinia tracheiphila SCR3 | 0.27 | LU632_RS21050 | truB | tRNA pseudouridine(55) synthase TruB | 0.56 | LU632_RS02565 | ettA | energy-dependent translational throttle protein EttA | low | > 74 |
| Enterobacter asburiae PDN3 | 0.27 | EX28DRAFT_3217 | | tRNA pseudouridine(55) synthase | 0.56 | EX28DRAFT_3601 | | ATP-binding cassette protein, ChvD family | low | > 76 |
| Klebsiella michiganensis M5al | 0.27 | BWI76_RS25080 | | tRNA pseudouridine(55) synthase | 0.56 | BWI76_RS04175 | | energy-dependent translational throttle protein EttA | low | > 92 |
| Escherichia coli ECRC62 | 0.27 | BNILDI_01610 | truB | tRNA pseudouridine(55) synthase TruB | 0.56 | BNILDI_08090 | ettA | energy-dependent translational throttle protein EttA | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.27 | GFF1500 | | tRNA pseudouridine synthase B (EC 4.2.1.70) | 0.56 | GFF1059 | | ABC transporter, ATP-binding protein | 0.91 | 36 |
| Escherichia coli ECOR27 | 0.27 | NOLOHH_09925 | truB | tRNA pseudouridine(55) synthase TruB | 0.56 | NOLOHH_03505 | ettA | energy-dependent translational throttle protein EttA | 0.84 | 52 |
| Dickeya dianthicola 67-19 | 0.27 | HGI48_RS03250 | | tRNA pseudouridine(55) synthase TruB | 0.57 | HGI48_RS18390 | | energy-dependent translational throttle protein EttA | low | > 71 |
| Enterobacter sp. TBS_079 | 0.27 | MPMX20_04071 | | tRNA pseudouridine synthase B | 0.56 | MPMX20_00698 | | Energy-dependent translational throttle protein EttA | low | > 85 |
| Serratia liquefaciens MT49 | 0.27 | IAI46_01945 | | tRNA pseudouridine(55) synthase TruB | 0.56 | IAI46_02965 | | energy-dependent translational throttle protein EttA | low | > 86 |
| Rahnella sp. WP5 | 0.27 | EX31_RS08530 | | tRNA pseudouridine(55) synthase TruB | 0.55 | EX31_RS04000 | | energy-dependent translational throttle protein EttA | low | > 89 |
| Shewanella sp. ANA-3 | 0.27 | Shewana3_1032 | | tRNA pseudouridine synthase B (RefSeq) | 0.55 | Shewana3_1093 | | putative ABC transporter ATP-binding protein (RefSeq) | low | > 73 |
| Variovorax sp. SCN45 | 0.27 | GFF220 | | tRNA pseudouridine(55) synthase (EC 5.4.99.25) | 0.57 | GFF6780 | | Energy-dependent translational throttle protein EttA | low | > 127 |
| Dickeya dianthicola ME23 | 0.27 | DZA65_RS03245 | | tRNA pseudouridine(55) synthase TruB | 0.57 | DZA65_RS19530 | | energy-dependent translational throttle protein EttA | low | > 75 |
| Ralstonia solanacearum PSI07 | 0.27 | RPSI07_RS17665 | | tRNA pseudouridine(55) synthase TruB | 0.57 | RPSI07_RS10585 | | energy-dependent translational throttle protein EttA | low | > 81 |
| Ralstonia sp. UNC404CL21Col | 0.27 | ABZR87_RS11220 | | tRNA pseudouridine(55) synthase TruB | 0.59 | ABZR87_RS02310 | | energy-dependent translational throttle protein EttA | low | > 80 |
| Ralstonia solanacearum GMI1000 | 0.27 | RS_RS06470 | | tRNA pseudouridine(55) synthase TruB | 0.57 | RS_RS14590 | | energy-dependent translational throttle protein EttA | low | > 80 |
| Ralstonia solanacearum UW163 | 0.27 | UW163_RS13150 | | tRNA pseudouridine(55) synthase TruB | 0.58 | UW163_RS06985 | | energy-dependent translational throttle protein EttA | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.27 | RALBFv3_RS15690 | | tRNA pseudouridine(55) synthase TruB | 0.58 | RALBFv3_RS06640 | | energy-dependent translational throttle protein EttA | low | > 76 |
| Dyella japonica UNC79MFTsu3.2 | 0.26 | ABZR86_RS06015 | | tRNA pseudouridine(55) synthase TruB | 0.58 | ABZR86_RS10725 | | energy-dependent translational throttle protein EttA | — | — |
| Acidovorax sp. GW101-3H11 | 0.26 | Ac3H11_2865 | | tRNA pseudouridine synthase B (EC 4.2.1.70) | 0.57 | Ac3H11_387 | | ABC transporter ATP-binding protein | — | — |
| Synechococcus elongatus PCC 7942 | 0.26 | Synpcc7942_1222 | truB | tRNA pseudouridine synthase B | 0.30 | Synpcc7942_1381 | | ATPase | low | > 38 |
| Marinobacter adhaerens HP15 | 0.26 | HP15_3065 | | tRNA pseudouridine synthase B | 0.57 | HP15_488 | | ABC transporter ATP-binding protein-like protein | low | > 73 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.21 | DVU0505 | truB | tRNA pseudouridine synthase B (TIGR) | 0.58 | DVU2586 | | ABC transporter, ATP-binding protein (TIGR) | low | > 55 |
Not shown: 2 genomes with orthologs for Atu0085 only; 18 genomes with orthologs for Atu2125 only