| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Shewanella sp. ANA-3 | 1.0 | Shewana3_2768 | | enoyl-CoA hydratase (RefSeq) | 1.0 | Shewana3_1753 | | ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq) | 0.69 | 18 |
| Shewanella oneidensis MR-1 | 0.99 | SO1680 | | enoyl-CoA hydratase/isomerase family protein (NCBI ptt file) | 0.97 | SO2626 | clpA | ATP-dependent Clp protease, ATP-binding subunit ClpA (NCBI ptt file) | low | > 76 |
| Shewanella loihica PV-4 | 0.86 | Shew_1670 | | enoyl-CoA hydratase (RefSeq) | 0.87 | Shew_1566 | | ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq) | low | > 60 |
| Shewanella amazonensis SB2B | 0.81 | Sama_1378 | | enoyl-CoA hydratase (RefSeq) | 0.90 | Sama_2056 | | ATP-dependent Clp protease, ATP-binding subunit ClpA (RefSeq) | 0.24 | 34 |
| Herbaspirillum seropedicae SmR1 | 0.68 | HSERO_RS12745 | | enoyl-CoA hydratase | 0.63 | HSERO_RS07030 | | ATP-dependent Clp protease ATP-binding protein | — | — |
| Pseudomonas sp. S08-1 | 0.65 | OH686_05875 | | Enoyl-CoA hydratase | 0.68 | OH686_00235 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 80 |
| Marinobacter adhaerens HP15 | 0.65 | HP15_908 | | enoyl-CoA hydratase/isomerase | 0.69 | HP15_2080 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 73 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.63 | Xcc-8004.3687.1 | | Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) | 0.64 | Xcc-8004.2754.1 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 74 |
| Pseudomonas stutzeri RCH2 | 0.62 | Psest_3109 | | Enoyl-CoA hydratase/carnithine racemase | 0.68 | Psest_2027 | | ATP-dependent Clp protease ATP-binding subunit clpA | low | > 67 |
| Cupriavidus basilensis FW507-4G11 | 0.56 | RR42_RS28550 | | enoyl-CoA hydratase | 0.62 | RR42_RS17105 | | Clp protease ClpX | low | > 128 |
| Burkholderia phytofirmans PsJN | 0.55 | BPHYT_RS28020 | | enoyl-CoA hydratase | 0.62 | BPHYT_RS15710 | | ATP-dependent Clp protease ATP-binding protein | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.55 | H281DRAFT_01200 | | short chain enoyl-CoA hydratase (EC 4.2.1.17) | 0.62 | H281DRAFT_04082 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 103 |
| Paraburkholderia sabiae LMG 24235 | 0.54 | QEN71_RS12385 | | enoyl-CoA hydratase | 0.62 | QEN71_RS03005 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 153 |
| Ralstonia solanacearum PSI07 | 0.51 | RPSI07_RS02320 | | enoyl-CoA hydratase | 0.62 | RPSI07_RS12575 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 81 |
| Ralstonia sp. UNC404CL21Col | 0.51 | ABZR87_RS17480 | | enoyl-CoA hydratase | 0.63 | ABZR87_RS00435 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.50 | RALBFv3_RS20420 | | enoyl-CoA hydratase | 0.62 | RALBFv3_RS04810 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Ralstonia solanacearum UW163 | 0.50 | UW163_RS18755 | | enoyl-CoA hydratase | 0.62 | UW163_RS08860 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Ralstonia solanacearum GMI1000 | 0.50 | RS_RS20220 | | enoyl-CoA hydratase | 0.62 | RS_RS12370 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.31 | A4249_RS14515 | | enoyl-CoA hydratase-related protein | 0.58 | A4249_RS08390 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 48 |
| Acinetobacter radioresistens SK82 | 0.30 | MPMX26_03058 | | putative enoyl-CoA hydratase echA8 | 0.59 | MPMX26_01284 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 36 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.29 | GFF5663 | | Enoyl-CoA hydratase (EC 4.2.1.17) | 0.61 | GFF4521 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Variovorax sp. OAS795 | 0.29 | ABID97_RS18600 | | enoyl-CoA hydratase-related protein | 0.61 | ABID97_RS16910 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 91 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.29 | OHPLBJKB_02318 | | 2,3-dehydroadipyl-CoA hydratase | 0.70 | OHPLBJKB_02786 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 73 |
| Escherichia coli BW25113 | 0.29 | b1393 | paaF | enoyl-CoA hydratase-isomerase (NCBI) | 0.70 | b0882 | clpA | ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity (NCBI) | — | — |
| Escherichia coli ECOR27 | 0.29 | NOLOHH_19465 | paaF | 2,3-dehydroadipyl-CoA hydratase | 0.70 | NOLOHH_22180 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Rhizobium sp. OAE497 | 0.29 | ABIE40_RS01595 | | enoyl-CoA hydratase | 0.58 | ABIE40_RS08865 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 107 |
| Escherichia coli ECRC62 | 0.29 | BNILDI_17920 | paaF | 2,3-dehydroadipyl-CoA hydratase | 0.70 | BNILDI_20435 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Serratia liquefaciens MT49 | 0.29 | IAI46_16375 | | 2,3-dehydroadipyl-CoA hydratase | 0.71 | IAI46_08515 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 86 |
| Magnetospirillum magneticum AMB-1 | 0.29 | AMB_RS03265 | | enoyl-CoA hydratase | 0.59 | AMB_RS05705 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 64 |
| Klebsiella michiganensis M5al | 0.29 | BWI76_RS13115 | | 2,3-dehydroadipyl-CoA hydratase | 0.70 | BWI76_RS09615 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Enterobacter asburiae PDN3 | 0.28 | EX28DRAFT_1415 | | Enoyl-CoA hydratase/carnithine racemase | 0.70 | EX28DRAFT_2050 | | ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92) | low | > 76 |
| Sinorhizobium meliloti 1021 | 0.28 | SMc04398 | | enoyl-CoA hydratase | 0.57 | SMc02109 | | ATP-dependent Clp protease ATP-binding subunit protein | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.28 | Pf6N2E2_1834 | | Enoyl-CoA hydratase (EC 4.2.1.17) | 0.68 | Pf6N2E2_292 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 103 |
| Castellaniella sp019104865 MT123 | 0.28 | ABCV34_RS10435 | | enoyl-CoA hydratase | 0.60 | ABCV34_RS05305 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Phaeobacter inhibens DSM 17395 | 0.27 | PGA1_c36500 | | enoyl-CoA hydratase/isomerase | 0.56 | PGA1_c25150 | | ATP-dependent Clp protease ATP-binding subunit | — | — |
| Azospirillum sp. SherDot2 | 0.27 | MPMX19_02766 | | putative enoyl-CoA hydratase echA8 | 0.58 | MPMX19_00503 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 112 |
| Dinoroseobacter shibae DFL-12 | 0.27 | Dshi_3370 | | Enoyl-CoA hydratase/isomerase (RefSeq) | 0.58 | Dshi_2939 | | ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq) | — | — |
| Agrobacterium fabrum C58 | 0.27 | Atu0322 | | enoyl CoA hydratase | 0.56 | Atu1364 | | ATP-dependent Clp protease, ATP-binding subunit | low | > 89 |
| Azospirillum brasilense Sp245 | 0.27 | AZOBR_RS01260 | | enoyl-CoA hydratase | 0.58 | AZOBR_RS05175 | | ATP-dependent Clp protease ATP-binding protein | low | > 97 |
| Rhodospirillum rubrum S1H | 0.27 | Rru_A3801 | | Enoyl-CoA hydratase/isomerase (NCBI) | 0.60 | Rru_A2109 | | ATP-dependent Clp protease ATP-binding subunit ClpA (NCBI) | low | > 58 |
| Sphingomonas koreensis DSMZ 15582 | 0.26 | Ga0059261_3685 | | Enoyl-CoA hydratase/carnithine racemase | 0.58 | Ga0059261_1001 | | ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92) | low | > 68 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.26 | GFF210 | | Carnitine racemase (EC 5.-.-.-) / Carnitinyl-CoA dehydratase (EC 4.2.1.-) | 0.70 | GFF4901 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 78 |
| Dechlorosoma suillum PS | 0.26 | Dsui_1378 | | enoyl-CoA hydratase/carnithine racemase | 0.63 | Dsui_0009 | | ATP-dependent Clp protease ATP-binding subunit clpA | low | > 51 |
| Enterobacter sp. TBS_079 | 0.26 | MPMX20_02147 | | 2,3-dehydroadipyl-CoA hydratase | 0.70 | MPMX20_01544 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 85 |
| Caulobacter crescentus NA1000 Δfur | 0.26 | CCNA_00006 | | enoyl-CoA hydratase | 0.57 | CCNA_02553 | | ATP-dependent clp protease ATP-binding subunit ClpA | low | > 67 |
| Caulobacter crescentus NA1000 | 0.26 | CCNA_00006 | | enoyl-CoA hydratase | 0.57 | CCNA_02553 | | ATP-dependent clp protease ATP-binding subunit ClpA | low | > 66 |
| Pseudomonas fluorescens SBW25 | 0.26 | PFLU_RS14775 | | enoyl-CoA hydratase | 0.68 | PFLU_RS18550 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.26 | PFLU_RS14775 | | enoyl-CoA hydratase | 0.68 | PFLU_RS18550 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.17 | 67 |
| Escherichia coli Nissle 1917 | 0.25 | ECOLIN_RS00200 | | crotonobetainyl-CoA hydratase | 0.70 | ECOLIN_RS04695 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 52 |
| Escherichia coli ECRC98 | 0.25 | JDDGAC_14515 | caiD | crotonobetainyl-CoA hydratase | 0.70 | JDDGAC_09420 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Variovorax sp. SCN45 | 0.25 | GFF4865 | | Enoyl-CoA hydratase (EC 4.2.1.17) | 0.61 | GFF341 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 127 |
| Escherichia coli ECRC99 | 0.25 | KEDOAH_17235 | caiD | crotonobetainyl-CoA hydratase | 0.70 | KEDOAH_22125 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Pseudomonas simiae WCS417 | 0.25 | PS417_13845 | | enoyl-CoA hydratase | 0.69 | PS417_16510 | | Clp protease ClpX | — | — |
| Escherichia coli BL21 | 0.25 | ECD_00040 | | carnitinyl-CoA dehydratase | 0.70 | ECD_00887 | | ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity | low | > 60 |
| Escherichia fergusonii Becca | 0.25 | EFB2_04009 | | Carnitinyl-CoA dehydratase | 0.70 | EFB2_03179 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 86 |
| Escherichia coli ECRC101 | 0.25 | OKFHMN_10920 | caiD | crotonobetainyl-CoA hydratase | 0.70 | OKFHMN_05785 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Escherichia coli ECRC102 | 0.25 | NIAGMN_08770 | caiD | crotonobetainyl-CoA hydratase | 0.70 | NIAGMN_03825 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Escherichia coli ECOR38 | 0.25 | HEPCGN_08910 | caiD | crotonobetainyl-CoA hydratase | 0.70 | HEPCGN_22900 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 85 |
| Escherichia coli ECRC101 | 0.25 | MCAODC_01435 | caiD | crotonobetainyl-CoA hydratase | 0.70 | MCAODC_25000 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Acidovorax sp. GW101-3H11 | 0.25 | Ac3H11_4006 | | Enoyl-CoA hydratase (EC 4.2.1.17) | 0.61 | Ac3H11_2456 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 79 |
| Pseudomonas fluorescens GW456-L13 | 0.25 | PfGW456L13_2984 | | Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) | 0.68 | PfGW456L13_2646 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 87 |
| Pseudomonas fluorescens FW300-N1B4 | 0.25 | Pf1N1B4_4788 | | Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) | 0.68 | Pf1N1B4_4055 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Pseudomonas sp. RS175 | 0.25 | PFR28_01884 | | putative enoyl-CoA hydratase echA8 | 0.69 | PFR28_02613 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 88 |
| Pseudomonas putida KT2440 | 0.25 | PP_2217 | | enoyl-CoA hydratase | 0.68 | PP_4008 | | ATP-dependent serine protease | 0.19 | 57 |
| Pseudomonas fluorescens FW300-N2E3 | 0.25 | AO353_25675 | | enoyl-CoA hydratase | 0.68 | AO353_27675 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.25 | AO356_26360 | | enoyl-CoA hydratase | 0.68 | AO356_22150 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.26 | 83 |
| Rhodopseudomonas palustris CGA009 | 0.25 | TX73_009315 | | enoyl-CoA hydratase | 0.59 | TX73_016270 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 86 |
| Bosea sp. OAE506 | 0.24 | ABIE41_RS04195 | | enoyl-CoA hydratase | 0.59 | ABIE41_RS18235 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 77 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.23 | Psyr_3030 | | short chain enoyl-CoA hydratase | 0.68 | Psyr_3183 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 86 |
| Dyella japonica UNC79MFTsu3.2 | 0.23 | ABZR86_RS00870 | | enoyl-CoA hydratase-related protein | 0.64 | ABZR86_RS02200 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.23 | Psyr_3030 | | short chain enoyl-CoA hydratase | 0.68 | Psyr_3183 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Lysobacter sp. OAE881 | 0.21 | ABIE51_RS07570 | | enoyl-CoA hydratase-related protein | 0.64 | ABIE51_RS11490 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.21 | LRK54_RS15165 | | enoyl-CoA hydratase-related protein | 0.63 | LRK54_RS00420 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 59 |
| Rahnella sp. WP5 | 0.21 | EX31_RS16680 | | enoyl-CoA hydratase | 0.70 | EX31_RS18560 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 89 |
| Rhodanobacter denitrificans MT42 | 0.21 | LRK55_RS14880 | | enoyl-CoA hydratase-related protein | 0.63 | LRK55_RS00160 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 63 |
Not shown: 7 genomes with orthologs for Shewana3_2768 only; 14 genomes with orthologs for Shewana3_1753 only