Conservation of cofitness between Sama_1378 and Sama_2011 in Shewanella amazonensis SB2B

78 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella amazonensis SB2B 1.0 Sama_1378 enoyl-CoA hydratase (RefSeq) 1.0 Sama_2011 polyphosphate kinase (RefSeq) 0.31 6
Shewanella loihica PV-4 0.85 Shew_1670 enoyl-CoA hydratase (RefSeq) 0.86 Shew_3079 polyphosphate kinase (RefSeq) low > 60
Shewanella sp. ANA-3 0.83 Shewana3_2768 enoyl-CoA hydratase (RefSeq) 0.81 Shewana3_2417 polyphosphate kinase (RefSeq) low > 73
Herbaspirillum seropedicae SmR1 0.70 HSERO_RS12745 enoyl-CoA hydratase 0.23 HSERO_RS06305 polyphosphate kinase low > 78
Pseudomonas sp. S08-1 0.67 OH686_05875 Enoyl-CoA hydratase 0.25 OH686_13995 polyphosphate kinase 1 low > 80
Marinobacter adhaerens HP15 0.65 HP15_908 enoyl-CoA hydratase/isomerase 0.23 HP15_3334 polyphosphate kinase low > 73
Xanthomonas campestris pv. campestris strain 8004 0.65 Xcc-8004.3687.1 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) / Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) 0.23 Xcc-8004.4064.1 Polyphosphate kinase (EC 2.7.4.1) low > 74
Pseudomonas stutzeri RCH2 0.64 Psest_3109 Enoyl-CoA hydratase/carnithine racemase 0.24 Psest_3732 polyphosphate kinase 1 low > 67
Paraburkholderia graminis OAS925 0.58 ABIE53_005736 enoyl-CoA hydratase/carnithine racemase 0.24 ABIE53_002988 polyphosphate kinase — —
Paraburkholderia sabiae LMG 24235 0.58 QEN71_RS12385 enoyl-CoA hydratase 0.23 QEN71_RS04860 polyphosphate kinase 1 low > 153
Paraburkholderia bryophila 376MFSha3.1 0.57 H281DRAFT_01200 short chain enoyl-CoA hydratase (EC 4.2.1.17) 0.24 H281DRAFT_04418 polyphosphate kinase low > 103
Cupriavidus basilensis FW507-4G11 0.57 RR42_RS28550 enoyl-CoA hydratase 0.24 RR42_RS13435 polyphosphate kinase low > 128
Burkholderia phytofirmans PsJN 0.57 BPHYT_RS28020 enoyl-CoA hydratase 0.24 BPHYT_RS14110 polyphosphate kinase — —
Ralstonia sp. UNC404CL21Col 0.53 ABZR87_RS17480 enoyl-CoA hydratase 0.24 ABZR87_RS14065 polyphosphate kinase 1 — —
Ralstonia solanacearum PSI07 0.52 RPSI07_RS02320 enoyl-CoA hydratase 0.24 RPSI07_RS15330 polyphosphate kinase 1 low > 81
Ralstonia solanacearum GMI1000 0.52 RS_RS20220 enoyl-CoA hydratase 0.23 RS_RS07705 polyphosphate kinase 1 — —
Ralstonia solanacearum UW163 0.51 UW163_RS18755 enoyl-CoA hydratase 0.24 UW163_RS15425 polyphosphate kinase 1 — —
Ralstonia solanacearum IBSBF1503 0.51 RALBFv3_RS20420 enoyl-CoA hydratase 0.24 RALBFv3_RS02115 polyphosphate kinase 1 — —
Acinetobacter radioresistens SK82 0.32 MPMX26_03058 putative enoyl-CoA hydratase echA8 0.27 MPMX26_02335 Polyphosphate kinase low > 36
Brevundimonas sp. GW460-12-10-14-LB2 0.31 A4249_RS14515 enoyl-CoA hydratase-related protein 0.25 A4249_RS08195 RNA degradosome polyphosphate kinase — —
Mycobacterium tuberculosis H37Rv 0.31 Rv1070c Probable enoyl-CoA hydratase EchA8 (enoyl hydrase) (unsaturated acyl-CoA hydratase) (crotonase) 0.23 Rv2984 Polyphosphate kinase PPK (polyphosphoric acid kinase) (ATP-polyphosphate phosphotransferase) — —
Escherichia coli ECOR27 0.30 NOLOHH_19465 paaF 2,3-dehydroadipyl-CoA hydratase 0.51 NOLOHH_13450 ppk1 polyphosphate kinase 1 — —
Variovorax sp. OAS795 0.30 ABID97_RS18600 enoyl-CoA hydratase-related protein 0.22 ABID97_RS14575 polyphosphate kinase 1 low > 91
Escherichia coli BW25113 0.30 b1393 paaF enoyl-CoA hydratase-isomerase (NCBI) 0.51 b2501 ppk polyphosphate kinase (NCBI) — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.30 OHPLBJKB_02318 2,3-dehydroadipyl-CoA hydratase 0.51 OHPLBJKB_01225 Polyphosphate kinase low > 73
Klebsiella michiganensis M5al 0.30 BWI76_RS13115 2,3-dehydroadipyl-CoA hydratase 0.49 BWI76_RS20995 RNA degradosome polyphosphate kinase — —
Escherichia coli ECRC62 0.30 BNILDI_17920 paaF 2,3-dehydroadipyl-CoA hydratase 0.51 BNILDI_12260 ppk1 polyphosphate kinase 1 — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.30 GFF5663 Enoyl-CoA hydratase (EC 4.2.1.17) 0.23 GFF4226 Polyphosphate kinase (EC 2.7.4.1) — —
Pedobacter sp. GW460-11-11-14-LB5 0.29 CA265_RS20005 enoyl-CoA hydratase 0.39 CA265_RS09830 polyphosphate kinase 1 low > 88
Magnetospirillum magneticum AMB-1 0.29 AMB_RS03265 enoyl-CoA hydratase 0.25 AMB_RS14295 RNA degradosome polyphosphate kinase 0.57 55
Enterobacter asburiae PDN3 0.29 EX28DRAFT_1415 Enoyl-CoA hydratase/carnithine racemase 0.51 EX28DRAFT_0166 polyphosphate kinase 1 low > 76
Serratia liquefaciens MT49 0.29 IAI46_16375 2,3-dehydroadipyl-CoA hydratase 0.51 IAI46_18915 polyphosphate kinase 1 low > 86
Pseudomonas fluorescens FW300-N2E2 0.28 Pf6N2E2_1834 Enoyl-CoA hydratase (EC 4.2.1.17) 0.24 Pf6N2E2_4453 Polyphosphate kinase (EC 2.7.4.1) low > 103
Rhizobium sp. OAE497 0.28 ABIE40_RS01595 enoyl-CoA hydratase 0.26 ABIE40_RS06575 RNA degradosome polyphosphate kinase low > 107
Pontibacter actiniarum KMM 6156, DSM 19842 0.28 CA264_00410 enoyl-CoA hydratase 0.32 CA264_15725 polyphosphate kinase 1 0.44 62
Azospirillum sp. SherDot2 0.28 MPMX19_02766 putative enoyl-CoA hydratase echA8 0.25 MPMX19_01149 Polyphosphate kinase low > 112
Escherichia coli BL21 0.28 ECD_00040 carnitinyl-CoA dehydratase 0.51 ECD_02393 polyphosphate kinase, component of RNA degradosome low > 60
Dinoroseobacter shibae DFL-12 0.28 Dshi_3370 Enoyl-CoA hydratase/isomerase (RefSeq) 0.22 Dshi_0740 Polyphosphate kinase (RefSeq) — —
Variovorax sp. SCN45 0.28 GFF4865 Enoyl-CoA hydratase (EC 4.2.1.17) 0.23 GFF1089 Polyphosphate kinase (EC 2.7.4.1) low > 127
Escherichia coli ECRC102 0.27 NIAGMN_08770 caiD crotonobetainyl-CoA hydratase 0.51 NIAGMN_19570 ppk1 polyphosphate kinase 1 — —
Escherichia coli ECRC101 0.27 OKFHMN_10920 caiD crotonobetainyl-CoA hydratase 0.51 OKFHMN_21800 ppk1 polyphosphate kinase 1 — —
Escherichia coli ECRC98 0.27 JDDGAC_14515 caiD crotonobetainyl-CoA hydratase 0.51 JDDGAC_25745 ppk1 polyphosphate kinase 1 — —
Escherichia coli ECRC101 0.27 MCAODC_01435 caiD crotonobetainyl-CoA hydratase 0.51 MCAODC_12330 ppk1 polyphosphate kinase 1 — —
Escherichia coli ECOR38 0.27 HEPCGN_08910 caiD crotonobetainyl-CoA hydratase 0.51 HEPCGN_20965 ppk1 polyphosphate kinase 1 low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.27 GFF210 Carnitine racemase (EC 5.-.-.-) / Carnitinyl-CoA dehydratase (EC 4.2.1.-) 0.50 GFF2167 Polyphosphate kinase (EC 2.7.4.1) low > 78
Escherichia fergusonii Becca 0.27 EFB2_04009 Carnitinyl-CoA dehydratase 0.51 EFB2_01397 Polyphosphate kinase low > 86
Escherichia coli Nissle 1917 0.27 ECOLIN_RS00200 crotonobetainyl-CoA hydratase 0.51 ECOLIN_RS14200 polyphosphate kinase 1 low > 52
Escherichia coli ECRC99 0.27 KEDOAH_17235 caiD crotonobetainyl-CoA hydratase 0.51 KEDOAH_06420 ppk1 polyphosphate kinase 1 — —
Azospirillum brasilense Sp245 0.27 AZOBR_RS26485 enoyl-CoA hydratase 0.24 AZOBR_RS16235 polyphosphate kinase low > 97
Sinorhizobium meliloti 1021 0.27 SMc04398 enoyl-CoA hydratase 0.25 SMc00618 polyphosphate kinase — —
Castellaniella sp019104865 MT123 0.27 ABCV34_RS03755 enoyl-CoA hydratase 0.24 ABCV34_RS15580 polyphosphate kinase 1 low > 48
Agrobacterium fabrum C58 0.27 Atu0322 enoyl CoA hydratase 0.25 Atu1144 polyphosphate kinase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.27 Echvi_4069 Enoyl-CoA hydratase/carnithine racemase 0.23 Echvi_2996 polyphosphate kinase 1 low > 79
Enterobacter sp. TBS_079 0.27 MPMX20_02147 2,3-dehydroadipyl-CoA hydratase 0.51 MPMX20_03356 Polyphosphate kinase low > 85
Pseudomonas fluorescens GW456-L13 0.26 PfGW456L13_2434 Phenylacetate degradation enoyl-CoA hydratase PaaA (EC 4.2.1.17) 0.24 PfGW456L13_874 Polyphosphate kinase (EC 2.7.4.1) low > 87
Caulobacter crescentus NA1000 Δfur 0.26 CCNA_00006 enoyl-CoA hydratase 0.25 CCNA_01782 polyphosphate kinase 1 low > 67
Sphingomonas koreensis DSMZ 15582 0.26 Ga0059261_2668 Enoyl-CoA hydratase/carnithine racemase 0.24 Ga0059261_0225 polyphosphate kinase 1 low > 68
Caulobacter crescentus NA1000 0.26 CCNA_00006 enoyl-CoA hydratase 0.25 CCNA_01782 polyphosphate kinase 1 low > 66
Dechlorosoma suillum PS 0.26 Dsui_1378 enoyl-CoA hydratase/carnithine racemase 0.24 Dsui_2814 polyphosphate kinase 1 low > 51
Acidovorax sp. GW101-3H11 0.26 Ac3H11_4006 Enoyl-CoA hydratase (EC 4.2.1.17) 0.22 Ac3H11_452 Polyphosphate kinase (EC 2.7.4.1) low > 79
Rhodospirillum rubrum S1H 0.25 Rru_A3801 Enoyl-CoA hydratase/isomerase (NCBI) 0.23 Rru_A2161 Polyphosphate kinase (NCBI) low > 58
Rhodopseudomonas palustris CGA009 0.25 TX73_009055 enoyl-CoA hydratase-related protein 0.23 TX73_015770 RNA degradosome polyphosphate kinase low > 86
Pseudomonas sp. RS175 0.25 PFR28_01884 putative enoyl-CoA hydratase echA8 0.24 PFR28_04345 Polyphosphate kinase 0.30 47
Pseudomonas fluorescens SBW25-INTG 0.25 PFLU_RS14775 enoyl-CoA hydratase 0.24 PFLU_RS29095 polyphosphate kinase 1 low > 109
Pseudomonas fluorescens FW300-N2E3 0.25 AO353_25675 enoyl-CoA hydratase 0.24 AO353_08885 polyphosphate kinase — —
Pseudomonas putida KT2440 0.25 PP_2217 enoyl-CoA hydratase 0.24 PP_5217 Polyphosphate kinase low > 96
Pseudomonas fluorescens SBW25 0.25 PFLU_RS14775 enoyl-CoA hydratase 0.24 PFLU_RS29095 polyphosphate kinase 1 low > 109
Pseudomonas simiae WCS417 0.25 PS417_13845 enoyl-CoA hydratase 0.24 PS417_27435 polyphosphate kinase — —
Pseudomonas fluorescens FW300-N2C3 0.25 AO356_26360 enoyl-CoA hydratase 0.24 AO356_12895 polyphosphate kinase 0.41 14
Mucilaginibacter yixingensis YX-36 DSM 26809 0.25 ABZR88_RS20955 enoyl-CoA hydratase/isomerase family protein 0.37 ABZR88_RS04845 polyphosphate kinase 1 low > 71
Pseudomonas syringae pv. syringae B728a ΔmexB 0.25 Psyr_3030 short chain enoyl-CoA hydratase 0.24 Psyr_0293 Polyphosphate kinase low > 86
Pseudomonas syringae pv. syringae B728a 0.25 Psyr_3030 short chain enoyl-CoA hydratase 0.24 Psyr_0293 Polyphosphate kinase — —
Pseudomonas fluorescens FW300-N1B4 0.25 Pf1N1B4_4788 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) 0.24 Pf1N1B4_2208 Polyphosphate kinase (EC 2.7.4.1) — —
Dyella japonica UNC79MFTsu3.2 0.24 ABZR86_RS00870 enoyl-CoA hydratase-related protein 0.25 ABZR86_RS07490 polyphosphate kinase 1 — —
Rhodanobacter denitrificans MT42 0.24 LRK55_RS14880 enoyl-CoA hydratase-related protein 0.25 LRK55_RS15755 polyphosphate kinase 1 low > 63
Rhodanobacter denitrificans FW104-10B01 0.24 LRK54_RS15165 enoyl-CoA hydratase-related protein 0.25 LRK54_RS16000 polyphosphate kinase 1 low > 59
Rahnella sp. WP5 0.24 EX31_RS16680 enoyl-CoA hydratase 0.50 EX31_RS22680 polyphosphate kinase 1 low > 89
Bosea sp. OAE506 0.23 ABIE41_RS04195 enoyl-CoA hydratase 0.24 ABIE41_RS16125 RNA degradosome polyphosphate kinase low > 77
Rhodanobacter sp. FW510-T8 0.22 OKGIIK_03935 Enoyl-CoA hydratase 0.25 OKGIIK_08995 ppk1 RNA degradosome polyphosphate kinase low > 52

Not shown: 3 genomes with orthologs for Sama_1378 only; 18 genomes with orthologs for Sama_2011 only