| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Shewanella loihica PV-4 | 1.0 | Shew_0031 | | RND family efflux transporter MFP subunit (RefSeq) | 1.0 | Shew_0032 | | hydrophobe/amphiphile efflux-1 (HAE1) family protein (RefSeq) | 0.99 | 1 |
| Shewanella oneidensis MR-1 | 0.75 | SO4693 | | multidrug resistance protein, AcrA/AcrE family (NCBI ptt file) | 0.87 | SO4692 | | AcrB/AcrD/AcrF family protein (NCBI ptt file) | 0.97 | 1 |
| Shewanella sp. ANA-3 | 0.75 | Shewana3_4046 | | RND family efflux transporter MFP subunit (RefSeq) | 0.87 | Shewana3_4045 | | hydrophobe/amphiphile efflux-1 (HAE1) family protein (RefSeq) | 0.97 | 1 |
| Shewanella amazonensis SB2B | 0.70 | Sama_3553 | | multidrug resistance protein AcrA/AcrE family (RefSeq) | 0.85 | Sama_3554 | | AcrB/AcrD/AcrF family protein (RefSeq) | 0.99 | 1 |
| Pantoea sp. MT58 | 0.48 | IAI47_14510 | | efflux RND transporter periplasmic adaptor subunit | 0.65 | IAI47_14515 | | multidrug efflux RND transporter permease subunit | 0.90 | 1 |
| Erwinia tracheiphila SCR3 | 0.47 | LU632_RS18180 | | efflux RND transporter periplasmic adaptor subunit | 0.66 | LU632_RS18185 | | efflux RND transporter permease subunit | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.47 | Pf6N2E2_221 | | RND efflux system, membrane fusion protein CmeA | 0.64 | Pf6N2E2_2824 | | RND efflux system, inner membrane transporter CmeB | low | > 103 |
| Enterobacter sp. TBS_079 | 0.46 | MPMX20_01065 | | Multidrug efflux pump subunit AcrA | 0.66 | MPMX20_01064 | | Multidrug efflux pump subunit AcrB | 0.82 | 1 |
| Rahnella sp. WP5 | 0.46 | EX31_RS22475 | | efflux RND transporter periplasmic adaptor subunit | 0.66 | EX31_RS22470 | | multidrug efflux RND transporter permease subunit | 0.75 | 1 |
| Serratia liquefaciens MT49 | 0.46 | IAI46_05190 | | multidrug efflux RND transporter periplasmic adaptor subunit SdeX | 0.65 | IAI46_05185 | | multidrug efflux RND transporter permease subunit SdeY | 0.72 | 2 |
| Dickeya dadantii 3937 | 0.46 | DDA3937_RS05740 | | efflux RND transporter periplasmic adaptor subunit | 0.66 | DDA3937_RS05735 | | multidrug efflux RND transporter permease subunit | 0.96 | 1 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.46 | Xcc-8004.1793.1 | | RND efflux system, membrane fusion protein CmeA | 0.62 | Xcc-8004.1794.1 | | RND efflux system, inner membrane transporter CmeB | low | > 74 |
| Herbaspirillum seropedicae SmR1 | 0.46 | HSERO_RS23060 | | hemolysin D | 0.61 | HSERO_RS06815 | | multidrug transporter | low | > 78 |
| Enterobacter asburiae PDN3 | 0.45 | EX28DRAFT_2495 | | RND family efflux transporter, MFP subunit | 0.67 | EX28DRAFT_2496 | | The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family | 0.88 | 1 |
| Klebsiella michiganensis M5al | 0.45 | BWI76_RS25580 | | MexX family efflux pump subunit | 0.66 | BWI76_RS06775 | | multidrug efflux RND transporter permease subunit | low | > 92 |
| Rhodospirillum rubrum S1H | 0.45 | Rru_A2050 | | Secretion protein HlyD (NCBI) | 0.64 | Rru_A2051 | | Hydrophobe/amphiphile efflux-1 HAE1 (NCBI) | 0.58 | 17 |
| Pectobacterium carotovorum WPP14 | 0.45 | HER17_RS15735 | | efflux RND transporter periplasmic adaptor subunit | 0.66 | HER17_RS15740 | | multidrug efflux RND transporter permease subunit | 0.96 | 1 |
| Dickeya dianthicola 67-19 | 0.45 | HGI48_RS05795 | | efflux RND transporter periplasmic adaptor subunit | 0.66 | HGI48_RS05790 | | multidrug efflux RND transporter permease subunit | 0.79 | 1 |
| Dickeya dianthicola ME23 | 0.45 | DZA65_RS06120 | | efflux RND transporter periplasmic adaptor subunit | 0.66 | DZA65_RS06115 | | multidrug efflux RND transporter permease subunit | 0.98 | 1 |
| Pseudomonas sp. RS175 | 0.44 | PFR28_00632 | | putative efflux pump periplasmic linker TtgA | 0.63 | PFR28_00631 | | putative efflux pump membrane transporter TtgB | 0.92 | 1 |
| Pseudomonas fluorescens FW300-N2C3 | 0.44 | AO356_04875 | | antibiotic transporter | 0.64 | AO356_04880 | | multidrug transporter | 0.98 | 1 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.44 | Psyr_4007 | | Secretion protein HlyD | 0.63 | Psyr_4008 | | Hydrophobe/amphiphile efflux-1 HAE1 | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.44 | Psyr_4007 | | Secretion protein HlyD | 0.63 | Psyr_4008 | | Hydrophobe/amphiphile efflux-1 HAE1 | 0.98 | 1 |
| Dyella japonica UNC79MFTsu3.2 | 0.44 | ABZR86_RS18280 | | efflux RND transporter periplasmic adaptor subunit | 0.63 | ABZR86_RS19190 | | efflux RND transporter permease subunit | low | > 74 |
| Escherichia fergusonii Becca | 0.44 | EFB2_00559 | | Multidrug export protein AcrE | 0.65 | EFB2_03596 | | Multidrug efflux pump subunit AcrB | low | > 86 |
| Escherichia coli ECOR38 | 0.44 | HEPCGN_06815 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | 0.65 | HEPCGN_06820 | acrB | efflux RND transporter permease AcrB | 0.98 | 1 |
| Escherichia coli Nissle 1917 | 0.44 | ECOLIN_RS02755 | | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | 0.65 | ECOLIN_RS02750 | | efflux RND transporter permease AcrB | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.43 | RALBFv3_RS19790 | | efflux RND transporter periplasmic adaptor subunit | 0.62 | RALBFv3_RS19795 | | multidrug efflux RND transporter permease subunit | low | > 76 |
| Caulobacter crescentus NA1000 Δfur | 0.43 | CCNA_00851 | | periplasmic multidrug efflux lipoprotein precursor | 0.64 | CCNA_00850 | | cation/multidrug efflux pump acrB2 | 0.85 | 1 |
| Ralstonia solanacearum UW163 | 0.43 | UW163_RS19385 | | efflux RND transporter periplasmic adaptor subunit | 0.62 | UW163_RS19380 | | multidrug efflux RND transporter permease subunit | — | — |
| Caulobacter crescentus NA1000 | 0.43 | CCNA_00851 | | periplasmic multidrug efflux lipoprotein precursor | 0.64 | CCNA_00850 | | cation/multidrug efflux pump acrB2 | 0.97 | 1 |
| Pseudomonas simiae WCS417 | 0.43 | PS417_06775 | | antibiotic transporter | 0.63 | PS417_06770 | | multidrug transporter | 0.92 | 1 |
| Escherichia coli ECRC101 | 0.43 | OKFHMN_08200 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | 0.65 | OKFHMN_08205 | acrB | efflux RND transporter permease AcrB | — | — |
| Escherichia coli BL21 | 0.43 | ECD_00414 | | multidrug efflux system | 0.65 | ECD_00413 | | multidrug efflux system protein | 0.71 | 17 |
| Escherichia coli ECOR27 | 0.43 | NOLOHH_01135 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | 0.65 | NOLOHH_01140 | acrB | efflux RND transporter permease AcrB | low | > 57 |
| Escherichia coli ECRC62 | 0.43 | BNILDI_22550 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | 0.65 | BNILDI_22555 | acrB | efflux RND transporter permease AcrB | — | — |
| Escherichia coli ECRC99 | 0.43 | KEDOAH_19765 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | 0.65 | KEDOAH_19760 | acrB | efflux RND transporter permease AcrB | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.43 | OHPLBJKB_03211 | | Multidrug efflux pump subunit AcrA | 0.65 | OHPLBJKB_03212 | | Multidrug efflux pump subunit AcrB | 0.86 | 1 |
| Escherichia coli ECRC102 | 0.43 | NIAGMN_06255 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | 0.65 | NIAGMN_06260 | acrB | efflux RND transporter permease AcrB | — | — |
| Escherichia coli BW25113 | 0.43 | b0463 | acrA | multidrug efflux system (NCBI) | 0.65 | b0462 | acrB | multidrug efflux system protein (NCBI) | 0.98 | 1 |
| Escherichia coli ECRC98 | 0.43 | JDDGAC_11850 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | 0.60 | JDDGAC_25915 | acrD | multidrug efflux RND transporter permease AcrD | — | — |
| Escherichia coli ECRC101 | 0.43 | MCAODC_27425 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | 0.65 | MCAODC_27430 | acrB | efflux RND transporter permease AcrB | — | — |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.43 | DVU2817 | acrA | multidrug resistance protein (TIGR) | 0.65 | DVU2816 | | multidrug resistance protein (TIGR) | 0.35 | 2 |
| Ralstonia solanacearum GMI1000 | 0.43 | RS_RS21035 | | efflux RND transporter periplasmic adaptor subunit | 0.62 | RS_RS21030 | | multidrug efflux RND transporter permease subunit | low | > 80 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.43 | GFF4380 | | Membrane fusion protein of RND family multidrug efflux pump | 0.66 | GFF4379 | | RND efflux system, inner membrane transporter CmeB | 0.59 | 4 |
| Pseudomonas putida KT2440 | 0.43 | PP_1386 | | Probable efflux pump periplasmic linker TtgA | 0.63 | PP_1385 | | Probable efflux pump membrane transporter TtgB | 0.98 | 1 |
| Pseudomonas fluorescens SBW25 | 0.43 | PFLU_RS06810 | | efflux RND transporter periplasmic adaptor subunit | 0.62 | PFLU_RS06805 | | efflux RND transporter permease subunit | 0.80 | 1 |
| Pseudomonas fluorescens SBW25-INTG | 0.43 | PFLU_RS06810 | | efflux RND transporter periplasmic adaptor subunit | 0.62 | PFLU_RS06805 | | efflux RND transporter permease subunit | 0.96 | 1 |
| Pseudomonas sp. S08-1 | 0.43 | OH686_16045 | | Multidrug efflux system, membrane fusion component | 0.65 | OH686_16050 | | Multidrug efflux system, inner membrane proton/drug antiporter (RND type) | 0.86 | 1 |
| Ralstonia solanacearum PSI07 | 0.43 | RPSI07_RS03395 | | efflux RND transporter periplasmic adaptor subunit | 0.62 | RPSI07_RS03390 | | multidrug efflux RND transporter permease subunit | low | > 81 |
| Pseudomonas stutzeri RCH2 | 0.42 | Psest_0309 | | RND family efflux transporter, MFP subunit | 0.64 | Psest_0310 | | The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family | 0.68 | 1 |
| Rhodopseudomonas palustris CGA009 | 0.42 | TX73_012250 | | efflux RND transporter periplasmic adaptor subunit | 0.58 | TX73_012255 | | efflux RND transporter permease subunit | low | > 86 |
| Azospirillum sp. SherDot2 | 0.42 | MPMX19_05883 | | Multidrug resistance protein MexA | 0.65 | MPMX19_05884 | | Multidrug efflux pump subunit AcrB | low | > 112 |
| Acinetobacter radioresistens SK82 | 0.42 | MPMX26_00690 | | Multidrug efflux pump subunit AcrA | 0.59 | MPMX26_00689 | | Multidrug resistance protein MexB | 0.96 | 2 |
| Pseudomonas fluorescens FW300-N1B4 | 0.42 | Pf1N1B4_3247 | | Multidrug efflux RND membrane fusion protein MexC | 0.64 | Pf1N1B4_3246 | | RND efflux system, inner membrane transporter CmeB | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.42 | RR42_RS32415 | | hemolysin D | 0.62 | RR42_RS32420 | | multidrug efflux RND transporter permease subunit | low | > 128 |
| Pseudomonas fluorescens FW300-N2E3 | 0.42 | AO353_17300 | | antibiotic transporter | 0.64 | AO353_17295 | | multidrug transporter | 0.96 | 1 |
| Rhizobium sp. OAE497 | 0.41 | ABIE40_RS24220 | | efflux RND transporter periplasmic adaptor subunit | 0.61 | ABIE40_RS24225 | | efflux RND transporter permease subunit | low | > 107 |
| Pseudomonas fluorescens GW456-L13 | 0.41 | PfGW456L13_4580 | | Multidrug efflux RND membrane fusion protein MexC | 0.64 | PfGW456L13_4581 | | RND efflux system, inner membrane transporter CmeB | 0.93 | 1 |
| Bosea sp. OAE506 | 0.41 | ABIE41_RS01600 | | efflux RND transporter periplasmic adaptor subunit | 0.62 | ABIE41_RS01595 | | efflux RND transporter permease subunit | low | > 77 |
| Azospirillum brasilense Sp245 | 0.40 | AZOBR_RS30180 | | hemolysin D | 0.66 | AZOBR_RS30185 | | multidrug transporter | low | > 97 |
| Burkholderia phytofirmans PsJN | 0.40 | BPHYT_RS34600 | | hemolysin D | 0.64 | BPHYT_RS16170 | | multidrug efflux RND transporter permease subunit | — | — |
| Variovorax sp. SCN45 | 0.40 | GFF3822 | | RND efflux system, membrane fusion protein | 0.58 | GFF5990 | | RND efflux system, inner membrane transporter | low | > 127 |
| Paraburkholderia sabiae LMG 24235 | 0.40 | QEN71_RS29870 | | efflux RND transporter periplasmic adaptor subunit | 0.64 | QEN71_RS02525 | | efflux RND transporter permease subunit | 0.49 | 112 |
| Sinorhizobium meliloti 1021 | 0.39 | SMc02868 | | multidrug efflux system protein | 0.50 | SMc02867 | | multidrug-efflux system transmembrane protein | 0.71 | 4 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.39 | H281DRAFT_01000 | | membrane fusion protein, multidrug efflux system | 0.64 | H281DRAFT_04170 | | multidrug efflux pump | low | > 103 |
| Sphingomonas koreensis DSMZ 15582 | 0.39 | Ga0059261_0560 | | RND family efflux transporter, MFP subunit | 0.51 | Ga0059261_0559 | | The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family | low | > 68 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.38 | GFF5686 | | RND efflux system, membrane fusion protein CmeA | 0.52 | GFF3840 | | RND efflux system, inner membrane transporter CmeB | low | > 90 |
| Paraburkholderia graminis OAS925 | 0.38 | ABIE53_003409 | | membrane fusion protein (multidrug efflux system) | 0.64 | ABIE53_003408 | | multidrug efflux pump | 0.99 | 1 |
| Ralstonia sp. UNC404CL21Col | 0.37 | ABZR87_RS05310 | | efflux RND transporter periplasmic adaptor subunit | 0.52 | ABZR87_RS05315 | | efflux RND transporter permease subunit | 0.99 | 1 |
| Alteromonas macleodii MIT1002 | 0.37 | MIT1002_00134 | | Acriflavine resistance protein A precursor | 0.58 | MIT1002_00135 | | Multidrug-efflux transporter MexB | 0.63 | 1 |
| Agrobacterium fabrum C58 | 0.35 | Atu3203 | | RND multidrug efflux membrane permease | 0.55 | Atu2551 | | RND multidrug efflux transporter | 0.54 | 2 |
| Castellaniella sp019104865 MT123 | 0.32 | ABCV34_RS04230 | | efflux RND transporter periplasmic adaptor subunit | 0.48 | ABCV34_RS04225 | | efflux RND transporter permease subunit | 0.97 | 1 |
| Acidovorax sp. GW101-3H11 | 0.32 | Ac3H11_4449 | | RND efflux system, membrane fusion protein CmeA | 0.52 | Ac3H11_4448 | | RND efflux system, inner membrane transporter CmeB | 0.67 | 1 |
| Dechlorosoma suillum PS | 0.31 | Dsui_3181 | | RND family efflux transporter, MFP subunit | 0.47 | Dsui_3182 | | hydrophobe/amphiphile efflux-1 (HAE1) family transporter | — | — |
| Rhodanobacter sp. FW510-T8 | 0.30 | OKGIIK_09165 | acrA | efflux transporter periplasmic adaptor subunit | 0.47 | OKGIIK_09170 | | Efflux pump membrane transporter | low | > 52 |
| Rhodanobacter denitrificans FW104-10B01 | 0.28 | LRK54_RS02095 | | efflux RND transporter periplasmic adaptor subunit | 0.46 | LRK54_RS02100 | | multidrug efflux RND transporter permease subunit | 0.96 | 1 |
| Rhodanobacter denitrificans MT42 | 0.28 | LRK55_RS01870 | | efflux RND transporter periplasmic adaptor subunit | 0.46 | LRK55_RS01875 | | multidrug efflux RND transporter permease subunit | 0.95 | 1 |
| Lysobacter sp. OAE881 | 0.26 | ABIE51_RS17985 | | efflux RND transporter periplasmic adaptor subunit | 0.47 | ABIE51_RS17980 | | multidrug efflux RND transporter permease subunit | 0.99 | 1 |
Not shown: 3 genomes with orthologs for Shew_0031 only; 2 genomes with orthologs for Shew_0032 only