Conservation of cofitness between SO1896 and SO1894 in Shewanella oneidensis MR-1

73 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella oneidensis MR-1 1.0 SO1896 pccB-1 3-methylcrotonyl CoA carboxylase, beta subunit (NCBI ptt file) 1.0 SO1894 acetyl-CoA carboxylase, biotin carboxylase, putative (NCBI ptt file) 0.88 1
Shewanella sp. ANA-3 0.98 Shewana3_1671 carboxyl transferase (RefSeq) 0.93 Shewana3_1669 3-methylcrotonoyl-CoA carboxylase, alpha subunit (RefSeq) 0.94 1
Shewanella loihica PV-4 0.93 Shew_2571 propionyl-CoA carboxylase (RefSeq) 0.76 Shew_2573 carbamoyl-phosphate synthase L chain, ATP-binding (RefSeq) 0.95 1
Shewanella amazonensis SB2B 0.92 Sama_1361 3-methylcrotonyl-CoA carboxylase, beta subunit (EC 6.4.1.4) (from data) 0.68 Sama_1359 3-methylcrotonyl-CoA carboxylase, alpha (biotin-containing) subunit (EC 6.4.1.4) (from data) 0.51 7
Marinobacter adhaerens HP15 0.79 HP15_1004 3-methylcrotonyl CoA carboxylase, beta subunit 0.50 HP15_4179 methylcrotonyl-CoA carboxylase, alpha subunit low > 73
Paraburkholderia bryophila 376MFSha3.1 0.76 H281DRAFT_01345 3-methylcrotonyl-CoA carboxylase beta subunit 0.41 H281DRAFT_01343 3-methylcrotonoyl-CoA carboxylase, alpha subunit 0.74 3
Cupriavidus basilensis FW507-4G11 0.76 RR42_RS26905 methylcrotonoyl-CoA carboxylase 0.43 RR42_RS26895 3-methylcrotonyl-CoA carboxylase 0.88 1
Burkholderia phytofirmans PsJN 0.76 BPHYT_RS23265 methylcrotonoyl-CoA carboxylase 0.42 BPHYT_RS23275 3-methylcrotonyl-CoA carboxylase subunit alpha 0.28 59
Paraburkholderia sabiae LMG 24235 0.76 QEN71_RS12865 carboxyl transferase domain-containing protein 0.42 QEN71_RS12855 acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha 0.97 1
Paraburkholderia graminis OAS925 0.76 ABIE53_005466 3-methylcrotonyl-CoA carboxylase beta subunit 0.41 ABIE53_005468 3-methylcrotonyl-CoA carboxylase alpha subunit low > 113
Ralstonia sp. UNC404CL21Col 0.75 ABZR87_RS06280 carboxyl transferase domain-containing protein 0.43 ABZR87_RS06260 acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha 0.63 10
Ralstonia solanacearum PSI07 0.75 RPSI07_RS22835 methylcrotonoyl-CoA carboxylase 0.44 RPSI07_RS22860 acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha low > 81
Ralstonia solanacearum GMI1000 0.75 RS_RS01320 methylcrotonoyl-CoA carboxylase 0.43 RS_RS01300 acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha 0.27 62
Acinetobacter radioresistens SK82 0.75 MPMX26_00631 Propionyl-CoA carboxylase beta chain 0.41 MPMX26_00629 Acetyl-/propionyl-coenzyme A carboxylase alpha chain
Ralstonia solanacearum IBSBF1503 0.75 RALBFv3_RS10480 methylcrotonoyl-CoA carboxylase 0.44 RALBFv3_RS10460 acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha 0.28 38
Ralstonia solanacearum UW163 0.75 UW163_RS03100 methylcrotonoyl-CoA carboxylase 0.44 UW163_RS03120 acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha
Alteromonas macleodii MIT1002 0.75 MIT1002_01668 Methylmalonyl-CoA carboxyltransferase 12S subunit 0.48 MIT1002_01666 Acetyl-/propionyl-coenzyme A carboxylase alpha chain 0.89 1
Azospirillum sp. SherDot2 0.75 MPMX19_03938 Methylmalonyl-CoA carboxyltransferase 12S subunit 0.45 MPMX19_03940 Acetyl-/propionyl-coenzyme A carboxylase alpha chain low > 112
Kangiella aquimarina DSM 16071 0.74 B158DRAFT_2509 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) 0.48 B158DRAFT_2507 Acetyl/propionyl-CoA carboxylase, alpha subunit
Azospirillum brasilense Sp245 0.74 AZOBR_RS22295 methylcrotonoyl-CoA carboxylase 0.45 AZOBR_RS22285 3-methylcrotonyl-CoA carboxylase subunit alpha
Herbaspirillum seropedicae SmR1 0.74 HSERO_RS23455 methylcrotonoyl-CoA carboxylase 0.43 HSERO_RS23460 3-methylcrotonyl-CoA carboxylase subunit alpha 0.30 75
Dechlorosoma suillum PS 0.74 Dsui_0980 acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) 0.43 Dsui_0982 acetyl/propionyl-CoA carboxylase, alpha subunit low > 51
Acidovorax sp. GW101-3H11 0.74 Ac3H11_3010 Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) 0.41 Ac3H11_3016 Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
Pseudomonas putida KT2440 0.74 PP_4065 methylcrotonyl-CoA carboxylase biotin-containing subunit beta 0.43 PP_4067 methylcrotonyl-CoA carboxylase biotin-containing subunit alpha 0.93 1
Pseudomonas sp. BP01 0.74 JOY50_RS06795 carboxyl transferase domain-containing protein 0.42 JOY50_RS06805 acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha low > 84
Acinetobacter baumannii LAC-4 0.73 RR41_RS11125 methylcrotonoyl-CoA carboxylase 0.43 RR41_RS11115 acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha low > 55
Pseudomonas fluorescens FW300-N2E2 0.73 Pf6N2E2_2192 3-methylcrotonyl-CoA carboxylase, beta subunit (EC 6.4.1.4) (from data) 0.43 Pf6N2E2_2194 3-methylcrotonyl-CoA carboxylase, alpha (biotin-containing) subunit (EC 6.4.1.4) (from data) 0.83 3
Pseudomonas fluorescens GW456-L13 0.73 PfGW456L13_2590 Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) 0.43 PfGW456L13_2588 Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) 0.87 1
Pseudomonas fluorescens FW300-N1B4 0.73 Pf1N1B4_3986 Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) 0.43 Pf1N1B4_3984 3-methylcrotonyl-CoA carboxylase, alpha (biotin-containing) subunit (EC 6.4.1.4) (from data) 0.42 2
Pseudomonas fluorescens SBW25 0.73 PFLU_RS18970 methylcrotonoyl-CoA carboxylase 0.42 PFLU_RS18980 acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha 0.69 79
Pseudomonas fluorescens SBW25-INTG 0.73 PFLU_RS18970 methylcrotonoyl-CoA carboxylase 0.42 PFLU_RS18980 acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha 0.86 2
Agrobacterium fabrum C58 0.73 Atu3478 3-methylcrotonoyl-CoA carboxylase beta subunit 0.43 Atu3479 3-methylcrotonyl-CoA carboxylase subunit alpha 0.55 1
Pseudomonas sp. S08-1 0.73 OH686_00850 Methylcrotonyl-CoA carboxylase carboxyl transferase subunit 0.42 OH686_00840 Methylcrotonyl-CoA carboxylase biotin-containing subunit 0.86 2
Pseudomonas sp. SVBP6 0.73 COO64_RS24750 carboxyl transferase domain-containing protein 0.43 COO64_RS24740 acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha low > 93
Pseudomonas syringae pv. syringae B728a ΔmexB 0.73 Psyr_2469 Propionyl-CoA carboxylase 0.43 Psyr_2467 3-methylcrotonoyl-CoA carboxylase, alpha subunit low > 86
Pseudomonas syringae pv. syringae B728a 0.73 Psyr_2469 Propionyl-CoA carboxylase 0.43 Psyr_2467 3-methylcrotonoyl-CoA carboxylase, alpha subunit 0.48 24
Variovorax sp. SCN45 0.73 GFF2008 Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) 0.38 GFF2013 Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) 0.90 25
Pseudomonas fluorescens FW300-N2C3 0.73 AO356_01585 3-methylcrotonyl-CoA carboxylase, beta subunit (EC 6.4.1.4) (from data) 0.43 AO356_01595 3-methylcrotonyl-CoA carboxylase, alpha (biotin-containing) subunit (EC 6.4.1.4) (from data) 0.76 3
Pseudomonas simiae WCS417 0.73 PS417_17020 methylcrotonoyl-CoA carboxylase 0.43 PS417_17030 3-methylcrotonyl-CoA carboxylase
Pseudomonas fluorescens FW300-N2E3 0.72 AO353_20345 methylcrotonoyl-CoA carboxylase 0.43 AO353_20335 3-methylcrotonyl-CoA carboxylase 0.59 3
Pseudomonas segetis P6 0.72 MPMX49_02361 Methylmalonyl-CoA carboxyltransferase 12S subunit 0.44 MPMX49_02359 Acetyl-/propionyl-coenzyme A carboxylase alpha chain 0.94 1
Pseudomonas sp. DMC3 0.72 GFF1473 Methylmalonyl-CoA carboxyltransferase 12S subunit 0.43 GFF1471 Acetyl-/propionyl-coenzyme A carboxylase alpha chain low > 89
Hydrogenophaga sp. GW460-11-11-14-LB1 0.72 GFF1715 Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) 0.39 GFF1711 Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) 0.84 14
Pseudomonas sp. RS175 0.72 PFR28_01259 Methylmalonyl-CoA carboxyltransferase 12S subunit 0.42 PFR28_01257 Acetyl-/propionyl-coenzyme A carboxylase alpha chain 0.90 2
Pseudomonas lactucae CFBP13502 0.72 GEMAOFIL_03714 Methylmalonyl-CoA carboxyltransferase 12S subunit 0.41 GEMAOFIL_03716 Acetyl-/propionyl-coenzyme A carboxylase alpha chain low > 96
Magnetospirillum magneticum AMB-1 0.72 AMB_RS03475 methylcrotonoyl-CoA carboxylase 0.43 AMB_RS03465 acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha low > 64
Pseudomonas stutzeri RCH2 0.72 Psest_1083 3-methylcrotonyl-CoA carboxylase, beta subunit (EC 6.4.1.4) (from data) 0.43 Psest_1080 Acetyl/propionyl-CoA carboxylase, alpha subunit 0.94 1
Variovorax sp. OAS795 0.72 ABID97_RS25130 carboxyl transferase domain-containing protein 0.38 ABID97_RS25115 acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha 0.94 1
Castellaniella sp019104865 MT123 0.72 ABCV34_RS12355 carboxyl transferase domain-containing protein 0.41 ABCV34_RS12350 acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha 0.98 3
Dyella japonica UNC79MFTsu3.2 0.72 ABZR86_RS20580 carboxyl transferase domain-containing protein 0.40 ABZR86_RS20625 biotin carboxylase N-terminal domain-containing protein 0.53 5
Pseudomonas orientalis W4I3 0.72 QF045_RS18700 carboxyl transferase domain-containing protein 0.42 QF045_RS18710 acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha low > 93
Rhodanobacter sp. FW510-T8 0.71 OKGIIK_04015 Methylcrotonoyl-CoA carboxylase 0.41 OKGIIK_09335 3-methylcrotonyl-CoA carboxylase low > 53
Rhodanobacter sp000427505 FW510-R12 0.71 LRK53_RS13385 methylcrotonoyl-CoA carboxylase 0.42 LRK53_RS07685 acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha low > 59
Rhodospirillum rubrum S1H 0.71 Rru_A1943 Propionyl-CoA carboxylase (NCBI) 0.36 Rru_A1941 acyl-CoA carboxylase alpha chain (NCBI) low > 58
Xanthobacter sp. DMC5 0.71 GFF3793 Methylmalonyl-CoA carboxyltransferase 12S subunit 0.42 GFF3791 Acetyl-/propionyl-coenzyme A carboxylase alpha chain
Xanthomonas campestris pv. campestris strain 8004 0.70 Xcc-8004.319.1 Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) 0.41 Xcc-8004.318.1 Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) 0.87 3
Rhizobium sp. OAE497 0.70 ABIE40_RS20780 carboxyl transferase domain-containing protein 0.36 ABIE40_RS20775 acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha 0.95 1
Pseudomonas aeruginosa PA14 0.70 IKLFDK_09845 methylcrotonyl-CoA carboxylase subunit beta 0.43 IKLFDK_09835 methylcrotonyl-CoA carboxylase subunit alpha 0.29 94
Pseudomonas aeruginosa MRSN321 0.70 DY961_RS16255 liuB;inference=COORDINATES methylcrotonyl-CoA carboxylase subunit beta 0.42 DY961_RS16245 liuD;inference=COORDINATES methylcrotonyl-CoA carboxylase subunit alpha low > 100
Pseudomonas aeruginosa PUPa3 0.70 DQ20_RS38575 liuB;inference=COORDINATES methylcrotonyl-CoA carboxylase subunit beta 0.43 DQ20_RS38565 liuD;inference=COORDINATES methylcrotonyl-CoA carboxylase subunit alpha 0.62 1
Rhodanobacter denitrificans FW104-10B01 0.69 LRK54_RS15255 methylcrotonoyl-CoA carboxylase 0.41 LRK54_RS02280 ATP-grasp domain-containing protein 0.78 1
Rhodanobacter denitrificans MT42 0.69 LRK55_RS14970 carboxyl transferase domain-containing protein 0.41 LRK55_RS02035 biotin carboxylase N-terminal domain-containing protein low > 63
Caulobacter crescentus NA1000 0.69 CCNA_02252 methylcrotonyl-CoA carboxylase carboxyl transferase subunit 0.36 CCNA_02250 methylcrotonyl-CoA carboxylase biotin-containing subunit 0.86 1
Caulobacter crescentus NA1000 Δfur 0.69 CCNA_02252 methylcrotonyl-CoA carboxylase carboxyl transferase subunit 0.36 CCNA_02250 methylcrotonyl-CoA carboxylase biotin-containing subunit low > 67
Brevundimonas sp. GW460-12-10-14-LB2 0.69 A4249_RS03795 carboxyl transferase domain-containing protein 0.35 A4249_RS03810 biotin carboxylase N-terminal domain-containing protein 0.88 1
Sinorhizobium meliloti 1021 0.68 SM_b21122 3-methylcrotonyl-CoA carboxylase, beta subunit (EC 6.4.1.4) (from data) 0.38 SM_b21124 3-methylcrotonyl-CoA carboxylase, alpha (biotin-containing) subunit (EC 6.4.1.4) (from data) 0.85 2
Lysobacter sp. OAE881 0.68 ABIE51_RS13160 carboxyl transferase domain-containing protein 0.42 ABIE51_RS13200 acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha 0.91 1
Sphingomonas koreensis DSMZ 15582 0.68 Ga0059261_4055 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) 0.36 Ga0059261_4056 Acetyl/propionyl-CoA carboxylase, alpha subunit 0.95 1
Sphingobium sp. HT1-2 0.67 GFF2389 Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) 0.36 GFF4876 Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) low > 95
Rhodopseudomonas palustris CGA009 0.67 TX73_013115 carboxyl transferase domain-containing protein 0.37 TX73_013120 acetyl-CoA carboxylase biotin carboxylase subunit 0.87 1
Phaeobacter inhibens DSM 17395 0.66 PGA1_c10320 methylcrotonoyl-CoA carboxylase beta chain 0.39 PGA1_c10330 methylcrotonoyl-CoA carboxylase subunit alpha
Mycobacterium tuberculosis H37Rv 0.66 Rv2502c Probable acetyl-/propionyl-CoA carboxylase (beta subunit) AccD1 0.33 Rv2501c Probable acetyl-/propionyl-coenzyme A carboxylase alpha chain (alpha subunit) AccA1: biotin carboxylase + biotin carboxyl carrier protein (BCCP) low > 58
Bosea sp. OAE506 0.66 ABIE41_RS14815 carboxyl transferase domain-containing protein 0.36 ABIE41_RS14850 acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha 0.71 28
Dinoroseobacter shibae DFL-12 0.65 Dshi_1300 Propionyl-CoA carboxylase (RefSeq) 0.33 Dshi_0723 Propionyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.3) (from data) low > 64

Not shown: 13 genomes with orthologs for SO1896 only; 0 genomes with orthologs for SO1894 only