| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Rhodospirillum rubrum S1H | 1.0 | Rru_A2031 | | Protein of unknown function UPF0075 (NCBI) | 1.0 | Rru_A2109 | | ATP-dependent Clp protease ATP-binding subunit ClpA (NCBI) | 0.64 | 9 |
| Azospirillum brasilense Sp245 | 0.50 | AZOBR_RS05815 | | anhydro-N-acetylmuramic acid kinase | 0.77 | AZOBR_RS05175 | | ATP-dependent Clp protease ATP-binding protein | low | > 97 |
| Azospirillum sp. SherDot2 | 0.47 | MPMX19_01987 | | Anhydro-N-acetylmuramic acid kinase | 0.76 | MPMX19_00503 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 112 |
| Magnetospirillum magneticum AMB-1 | 0.46 | AMB_RS15285 | | anhydro-N-acetylmuramic acid kinase | 0.79 | AMB_RS05705 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 64 |
| Bosea sp. OAE506 | 0.43 | ABIE41_RS00035 | | anhydro-N-acetylmuramic acid kinase | 0.70 | ABIE41_RS18235 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 77 |
| Rhodopseudomonas palustris CGA009 | 0.43 | TX73_012725 | | anhydro-N-acetylmuramic acid kinase | 0.71 | TX73_016270 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 86 |
| Sinorhizobium meliloti 1021 | 0.40 | SMc00527 | | anhydro-N-acetylmuramic acid kinase | 0.69 | SMc02109 | | ATP-dependent Clp protease ATP-binding subunit protein | — | — |
| Rhizobium sp. OAE497 | 0.38 | ABIE40_RS10025 | | anhydro-N-acetylmuramic acid kinase | 0.71 | ABIE40_RS08865 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 107 |
| Phaeobacter inhibens DSM 17395 | 0.38 | PGA1_c11350 | | anhydro-N-acetylmuramic acid kinase AnmK | 0.69 | PGA1_c25150 | | ATP-dependent Clp protease ATP-binding subunit | low | > 62 |
| Caulobacter crescentus NA1000 | 0.36 | CCNA_01945 | | anhydro-N-acetylmuramic acid kinase | 0.70 | CCNA_02553 | | ATP-dependent clp protease ATP-binding subunit ClpA | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.36 | CCNA_01945 | | anhydro-N-acetylmuramic acid kinase | 0.70 | CCNA_02553 | | ATP-dependent clp protease ATP-binding subunit ClpA | low | > 67 |
| Agrobacterium fabrum C58 | 0.35 | Atu1827 | | hypothetical protein | 0.69 | Atu1364 | | ATP-dependent Clp protease, ATP-binding subunit | low | > 89 |
| Dinoroseobacter shibae DFL-12 | 0.35 | Dshi_2150 | | protein of unknown function UPF0075 (RefSeq) | 0.69 | Dshi_2939 | | ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq) | low | > 64 |
| Shewanella amazonensis SB2B | 0.29 | Sama_0848 | anmK | anhydro-N-acetylmuramic acid kinase (RefSeq) | 0.59 | Sama_2056 | | ATP-dependent Clp protease, ATP-binding subunit ClpA (RefSeq) | low | > 62 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.29 | Xcc-8004.4878.1 | | Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) | 0.59 | Xcc-8004.2754.1 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 74 |
| Dickeya dianthicola 67-19 | 0.28 | HGI48_RS12640 | | anhydro-N-acetylmuramic acid kinase | 0.58 | HGI48_RS09575 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 71 |
| Dickeya dianthicola ME23 | 0.28 | DZA65_RS13095 | | anhydro-N-acetylmuramic acid kinase | 0.58 | DZA65_RS09885 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 75 |
| Pseudomonas fluorescens FW300-N2C3 | 0.28 | AO356_14500 | | anhydro-N-acetylmuramic acid kinase | 0.60 | AO356_22150 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 104 |
| Dickeya dadantii 3937 | 0.28 | DDA3937_RS12585 | | anhydro-N-acetylmuramic acid kinase | 0.58 | DDA3937_RS09560 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 74 |
| Rhodanobacter sp. FW510-T8 | 0.27 | OKGIIK_15705 | | anhydro-N-acetylmuramic acid kinase | 0.58 | OKGIIK_06890 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 52 |
| Dyella japonica UNC79MFTsu3.2 | 0.27 | ABZR86_RS15665 | | anhydro-N-acetylmuramic acid kinase | 0.59 | ABZR86_RS02200 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 74 |
| Marinobacter adhaerens HP15 | 0.27 | HP15_356 | | anhydro-N-acetylmuramic acid kinase | 0.61 | HP15_2080 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 73 |
| Pantoea sp. MT58 | 0.27 | IAI47_10710 | | anhydro-N-acetylmuramic acid kinase | 0.58 | IAI47_12945 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 76 |
| Shewanella sp. ANA-3 | 0.27 | Shewana3_3060 | anmK | anhydro-N-acetylmuramic acid kinase (RefSeq) | 0.58 | Shewana3_1753 | | ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq) | 0.44 | 54 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.27 | H281DRAFT_04259 | | anhydro-N-acetylmuramic acid kinase | 0.58 | H281DRAFT_04082 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 103 |
| Vibrio cholerae E7946 ATCC 55056 | 0.27 | CSW01_03615 | | anhydro-N-acetylmuramic acid kinase | 0.58 | CSW01_05805 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 62 |
| Burkholderia phytofirmans PsJN | 0.27 | BPHYT_RS16645 | | anhydro-N-acetylmuramic acid kinase | 0.58 | BPHYT_RS15710 | | ATP-dependent Clp protease ATP-binding protein | low | > 109 |
| Shewanella oneidensis MR-1 | 0.27 | SO1313 | | conserved hypothetical protein (NCBI ptt file) | 0.58 | SO2626 | clpA | ATP-dependent Clp protease, ATP-binding subunit ClpA (NCBI ptt file) | low | > 76 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.27 | Psyr_4567 | | Protein of unknown function UPF0075 | 0.60 | Psyr_3183 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.27 | Psyr_4567 | | Protein of unknown function UPF0075 | 0.60 | Psyr_3183 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 86 |
| Rhodanobacter denitrificans FW104-10B01 | 0.27 | LRK54_RS09210 | | anhydro-N-acetylmuramic acid kinase | 0.58 | LRK54_RS00420 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 59 |
| Pseudomonas fluorescens FW300-N2E2 | 0.27 | Pf6N2E2_4838 | | Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) | 0.60 | Pf6N2E2_292 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 103 |
| Rhodanobacter denitrificans MT42 | 0.27 | LRK55_RS08740 | | anhydro-N-acetylmuramic acid kinase | 0.58 | LRK55_RS00160 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 63 |
| Pseudomonas fluorescens FW300-N2E3 | 0.26 | AO353_07145 | | anhydro-N-acetylmuramic acid kinase | 0.60 | AO353_27675 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 101 |
| Serratia liquefaciens MT49 | 0.26 | IAI46_11350 | | anhydro-N-acetylmuramic acid kinase | 0.58 | IAI46_08515 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 86 |
| Herbaspirillum seropedicae SmR1 | 0.26 | HSERO_RS02010 | | anhydro-N-acetylmuramic acid kinase | 0.61 | HSERO_RS07030 | | ATP-dependent Clp protease ATP-binding protein | — | — |
| Rahnella sp. WP5 | 0.26 | EX31_RS13765 | | anhydro-N-acetylmuramic acid kinase | 0.58 | EX31_RS18560 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 89 |
| Pseudomonas stutzeri RCH2 | 0.26 | Psest_3637 | | Predicted molecular chaperone distantly related to HSP70-fold metalloproteases | 0.60 | Psest_2027 | | ATP-dependent Clp protease ATP-binding subunit clpA | low | > 67 |
| Pseudomonas fluorescens GW456-L13 | 0.26 | PfGW456L13_1235 | | Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) | 0.60 | PfGW456L13_2646 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 87 |
| Pseudomonas putida KT2440 | 0.26 | PP_0434 | | Anhydro-N-acetylmuramic acid kinase | 0.61 | PP_4008 | | ATP-dependent serine protease | low | > 96 |
| Pseudomonas sp. S08-1 | 0.26 | OH686_15205 | | Anhydro-N-acetylmuramic acid kinase | 0.59 | OH686_00235 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 80 |
| Shewanella loihica PV-4 | 0.26 | Shew_1020 | anmK | anhydro-N-acetylmuramic acid kinase (RefSeq) | 0.58 | Shew_1566 | | ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq) | low | > 60 |
| Acidovorax sp. GW101-3H11 | 0.26 | Ac3H11_3055 | | Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) | 0.58 | Ac3H11_2456 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 79 |
| Kangiella aquimarina DSM 16071 | 0.26 | B158DRAFT_0004 | | Predicted molecular chaperone distantly related to HSP70-fold metalloproteases | 0.58 | B158DRAFT_1505 | | ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92) | low | > 40 |
| Enterobacter sp. TBS_079 | 0.26 | MPMX20_01998 | | Anhydro-N-acetylmuramic acid kinase | 0.58 | MPMX20_01544 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 85 |
| Pseudomonas fluorescens FW300-N1B4 | 0.26 | Pf1N1B4_2562 | | Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) | 0.60 | Pf1N1B4_4055 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.26 | OHPLBJKB_02085 | | Anhydro-N-acetylmuramic acid kinase | 0.58 | OHPLBJKB_02786 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 73 |
| Escherichia coli BW25113 | 0.26 | b1640 | ydhH | anhydro-N-acetylmuramic acid kinase (NCBI) | 0.58 | b0882 | clpA | ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity (NCBI) | low | > 76 |
| Escherichia coli ECRC102 | 0.26 | NIAGMN_00580 | anmK | anhydro-N-acetylmuramic acid kinase | 0.58 | NIAGMN_03825 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Escherichia coli ECOR38 | 0.26 | HEPCGN_05870 | anmK | anhydro-N-acetylmuramic acid kinase | 0.58 | HEPCGN_22900 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 87 |
| Escherichia coli ECRC101 | 0.26 | MCAODC_17925 | anmK | anhydro-N-acetylmuramic acid kinase | 0.58 | MCAODC_25000 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 87 |
| Escherichia coli ECRC98 | 0.26 | JDDGAC_02075 | anmK | anhydro-N-acetylmuramic acid kinase | 0.58 | JDDGAC_09420 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 86 |
| Escherichia coli ECOR27 | 0.26 | NOLOHH_18005 | anmK | anhydro-N-acetylmuramic acid kinase | 0.58 | NOLOHH_22180 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 75 |
| Escherichia coli BL21 | 0.26 | ECD_01610 | | anhydro-N-acetylmuramic acid kinase | 0.58 | ECD_00887 | | ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity | low | > 61 |
| Escherichia coli ECRC99 | 0.26 | KEDOAH_00620 | anmK | anhydro-N-acetylmuramic acid kinase | 0.58 | KEDOAH_22125 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Escherichia coli ECRC62 | 0.26 | BNILDI_16795 | anmK | anhydro-N-acetylmuramic acid kinase | 0.58 | BNILDI_20435 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 75 |
| Escherichia coli ECRC100 | 0.26 | OKFHMN_27485 | anmK | anhydro-N-acetylmuramic acid kinase | 0.58 | OKFHMN_05785 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 80 |
| Pectobacterium carotovorum WPP14 | 0.26 | HER17_RS09280 | | anhydro-N-acetylmuramic acid kinase | 0.58 | HER17_RS12400 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 75 |
| Escherichia coli Nissle 1917 | 0.26 | ECOLIN_RS09150 | | anhydro-N-acetylmuramic acid kinase | 0.58 | ECOLIN_RS04695 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Escherichia fergusonii Becca | 0.26 | EFB2_02352 | | Anhydro-N-acetylmuramic acid kinase | 0.58 | EFB2_03179 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 86 |
| Pseudomonas sp. RS175 | 0.25 | PFR28_04031 | | Anhydro-N-acetylmuramic acid kinase | 0.61 | PFR28_02613 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 88 |
| Lysobacter sp. OAE881 | 0.25 | ABIE51_RS00040 | | anhydro-N-acetylmuramic acid kinase | 0.58 | ABIE51_RS11490 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 62 |
| Pseudomonas simiae WCS417 | 0.25 | PS417_25650 | | anhydro-N-acetylmuramic acid kinase | 0.61 | PS417_16510 | | Clp protease ClpX | 0.41 | 16 |
| Enterobacter asburiae PDN3 | 0.25 | EX28DRAFT_1636 | | Predicted molecular chaperone distantly related to HSP70-fold metalloproteases | 0.59 | EX28DRAFT_2050 | | ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92) | low | > 76 |
| Pseudomonas fluorescens SBW25-INTG | 0.25 | PFLU_RS27305 | | anhydro-N-acetylmuramic acid kinase | 0.60 | PFLU_RS18550 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.25 | PFLU_RS27305 | | anhydro-N-acetylmuramic acid kinase | 0.60 | PFLU_RS18550 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 109 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.25 | GFF3634 | | Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) | 0.58 | GFF4901 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 78 |
| Erwinia tracheiphila SCR3 | 0.24 | LU632_RS11250 | anmK | anhydro-N-acetylmuramic acid kinase | 0.57 | LU632_RS09705 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 74 |
| Paraburkholderia sabiae LMG 24235 | 0.24 | QEN71_RS26820 | | anhydro-N-acetylmuramic acid kinase | 0.58 | QEN71_RS03005 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 153 |
| Cupriavidus basilensis FW507-4G11 | 0.24 | RR42_RS02660 | | anhydro-N-acetylmuramic acid kinase | 0.58 | RR42_RS17105 | | Clp protease ClpX | low | > 128 |
| Klebsiella michiganensis M5al | 0.24 | BWI76_RS16420 | | anhydro-N-acetylmuramic acid kinase | 0.58 | BWI76_RS09615 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 92 |
| Ralstonia solanacearum PSI07 | 0.24 | RPSI07_RS21585 | | anhydro-N-acetylmuramic acid kinase | 0.58 | RPSI07_RS12575 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 81 |
| Ralstonia solanacearum IBSBF1503 | 0.24 | RALBFv3_RS11635 | | anhydro-N-acetylmuramic acid kinase | 0.58 | RALBFv3_RS04810 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Ralstonia solanacearum UW163 | 0.24 | UW163_RS01950 | | anhydro-N-acetylmuramic acid kinase | 0.58 | UW163_RS08860 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Alteromonas macleodii MIT1002 | 0.24 | MIT1002_03153 | | Anhydro-N-acetylmuramic acid kinase | 0.59 | MIT1002_01834 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 70 |
| Castellaniella sp019104865 MT123 | 0.23 | ABCV34_RS10575 | | anhydro-N-acetylmuramic acid kinase | 0.57 | ABCV34_RS05305 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 48 |
| Ralstonia solanacearum GMI1000 | 0.23 | RS_RS02460 | | anhydro-N-acetylmuramic acid kinase | 0.58 | RS_RS12370 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Acinetobacter radioresistens SK82 | 0.23 | MPMX26_00013 | | Anhydro-N-acetylmuramic acid kinase | 0.57 | MPMX26_01284 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.49 | 20 |
| Ralstonia sp. UNC404CL21Col | 0.22 | ABZR87_RS07595 | | anhydro-N-acetylmuramic acid kinase | 0.59 | ABZR87_RS00435 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 80 |
| Variovorax sp. SCN45 | 0.22 | GFF2064 | | Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.170) | 0.58 | GFF341 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 127 |
| Variovorax sp. OAS795 | 0.22 | ABID97_RS24970 | | anhydro-N-acetylmuramic acid kinase | 0.57 | ABID97_RS16910 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 91 |