| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Rhodospirillum rubrum S1H | 1.0 | Rru_A0571 | | hypothetical protein (NCBI) | 1.0 | Rru_A1973 | | Transcriptional Regulator, LacI family (NCBI) | 0.72 | 17 |
| Azospirillum sp. SherDot2 | 0.50 | MPMX19_00577 | | Ribosomal RNA small subunit methyltransferase E | 0.55 | MPMX19_04627 | | HTH-type transcriptional regulator DegA | — | — |
| Azospirillum brasilense Sp245 | 0.48 | AZOBR_RS11890 | | 16S rRNA methyltransferase | 0.57 | AZOBR_RS32320 | | LacI family transcriptional regulator | low | > 97 |
| Phaeobacter inhibens DSM 17395 | 0.41 | PGA1_c02950 | | RNA methyltransferase-like protein | 0.17 | PGA1_c07290 | | transcriptional regulator, lacI family | low | > 62 |
| Dinoroseobacter shibae DFL-12 | 0.38 | Dshi_3099 | | protein of unknown function DUF558 (RefSeq) | 0.17 | Dshi_3140 | | transcriptional regulator, LacI family (RefSeq) | low | > 64 |
| Sphingomonas koreensis DSMZ 15582 | 0.37 | Ga0059261_0807 | | RNA methyltransferase, RsmE family | 0.19 | Ga0059261_0555 | | transcriptional regulator, LacI family | low | > 68 |
| Agrobacterium fabrum C58 | 0.36 | Atu0657 | | hypothetical protein | 0.25 | Atu5007 | | santhopine-responsive transcriptional repressor | low | > 89 |
| Sinorhizobium meliloti 1021 | 0.34 | SMc00826 | | 16S ribosomal RNA methyltransferase RsmE | 0.28 | SM_b20674 | | LacI family transcriptional regulator | low | > 103 |
| Rhizobium sp. OAE497 | 0.34 | ABIE40_RS03520 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.19 | ABIE40_RS26295 | | LacI family DNA-binding transcriptional regulator | low | > 107 |
| Caulobacter crescentus NA1000 | 0.34 | CCNA_03528 | | RNA methyltransferase | 0.22 | CCNA_01699 | | LacI-family transcriptional regulator | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.34 | CCNA_03528 | | RNA methyltransferase | 0.22 | CCNA_01699 | | LacI-family transcriptional regulator | low | > 67 |
| Bosea sp. OAE506 | 0.34 | ABIE41_RS23100 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.17 | ABIE41_RS06440 | | LacI family DNA-binding transcriptional regulator | low | > 77 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.31 | A4249_RS00350 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.18 | A4249_RS03600 | | LacI family DNA-binding transcriptional regulator | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.22 | PFLU_RS28200 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.24 | PFLU_RS15195 | | LacI family transcriptional regulator | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.22 | PFLU_RS28200 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.24 | PFLU_RS15195 | | LacI family transcriptional regulator | low | > 109 |
| Pseudomonas sp. RS175 | 0.22 | PFR28_04209 | | Ribosomal RNA small subunit methyltransferase E | 0.23 | PFR28_01600 | | HTH-type transcriptional regulator KdgR | low | > 88 |
| Pseudomonas fluorescens FW300-N2C3 | 0.22 | AO356_13565 | | 16S rRNA methyltransferase | 0.23 | AO356_00955 | | LacI family transcriptional regulator | low | > 104 |
| Pseudomonas simiae WCS417 | 0.22 | PS417_26545 | | 16S rRNA methyltransferase | 0.24 | PS417_18390 | | LacI family transcriptional regulator | low | > 88 |
| Pseudomonas fluorescens FW300-N1B4 | 0.22 | Pf1N1B4_2376 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | 0.23 | Pf1N1B4_6032 | | Ribose operon repressor | — | — |
| Pseudomonas putida KT2440 | 0.21 | PP_4985 | | 16S rRNA m3U1498 methyltransferase | 0.23 | PP_3380 | | 2-ketogluconate utilization repressor | low | > 96 |
| Pseudomonas fluorescens FW300-N2E2 | 0.21 | Pf6N2E2_4630 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | 0.23 | Pf6N2E2_164 | | Ribose operon repressor | low | > 103 |
| Pseudomonas fluorescens GW456-L13 | 0.21 | PfGW456L13_1043 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | 0.22 | PfGW456L13_3909 | | Ribose operon repressor | low | > 87 |
| Pseudomonas stutzeri RCH2 | 0.21 | Psest_0305 | | RNA methyltransferase, RsmE family | 0.11 | Psest_2126 | | Transcriptional regulators | low | > 67 |
| Pseudomonas fluorescens FW300-N2E3 | 0.21 | AO353_08050 | | 16S rRNA methyltransferase | 0.23 | AO353_26865 | | transcriptional regulator | low | > 101 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.20 | Psyr_0453 | | 16S rRNA m(3)U-1498 methyltransferase | 0.23 | Psyr_2154 | | transcriptional regulator, LacI family | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.20 | Psyr_0453 | | 16S rRNA m(3)U-1498 methyltransferase | 0.23 | Psyr_2154 | | transcriptional regulator, LacI family | low | > 86 |
| Alteromonas macleodii MIT1002 | 0.19 | MIT1002_03054 | | Ribosomal RNA small subunit methyltransferase E | 0.21 | MIT1002_00363 | | HTH-type transcriptional repressor CytR | 0.61 | 57 |
| Cupriavidus basilensis FW507-4G11 | 0.19 | RR42_RS17590 | | 16S rRNA methyltransferase | 0.22 | RR42_RS09500 | | dehydrogenase | low | > 128 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.19 | Xcc-8004.1558.1 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | 0.60 | Xcc-8004.2177.1 | | Transcriptional regulator lacI family | — | — |
| Ralstonia solanacearum GMI1000 | 0.18 | RS_RS13825 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.51 | RS_RS14305 | | LacI family DNA-binding transcriptional regulator | — | — |
| Rhodanobacter denitrificans MT42 | 0.18 | LRK55_RS03930 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.20 | LRK55_RS08435 | | LacI family DNA-binding transcriptional regulator | low | > 63 |
| Acidovorax sp. GW101-3H11 | 0.18 | Ac3H11_4323 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | 0.21 | Ac3H11_1840 | | Ribose operon repressor | low | > 79 |
| Ralstonia solanacearum IBSBF1503 | 0.18 | RALBFv3_RS05880 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.51 | RALBFv3_RS06355 | | LacI family transcriptional regulator | low | > 76 |
| Shewanella sp. ANA-3 | 0.18 | Shewana3_3444 | | 16S ribosomal RNA methyltransferase RsmE (RefSeq) | 0.14 | Shewana3_3122 | | LacI family transcription regulator (RefSeq) | low | > 73 |
| Ralstonia solanacearum UW163 | 0.18 | UW163_RS07745 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.51 | UW163_RS07270 | | LacI family transcriptional regulator | — | — |
| Enterobacter sp. TBS_079 | 0.18 | MPMX20_03804 | | Ribosomal RNA small subunit methyltransferase E | 0.23 | MPMX20_04614 | | Ribose operon repressor | low | > 85 |
| Shewanella loihica PV-4 | 0.18 | Shew_3224 | | hypothetical protein (RefSeq) | 0.15 | Shew_1870 | | LacI family transcription regulator (RefSeq) | low | > 60 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.18 | GFF3048 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | 0.22 | GFF2316 | | Transcriptional (co)regulator CytR | low | > 78 |
| Paraburkholderia sabiae LMG 24235 | 0.18 | QEN71_RS27020 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.23 | QEN71_RS24265 | | LacI family DNA-binding transcriptional regulator | low | > 153 |
| Escherichia coli ECRC100 | 0.18 | OKFHMN_19280 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.23 | OKFHMN_13725 | cytR | DNA-binding transcriptional regulator CytR | low | > 80 |
| Escherichia coli ECRC98 | 0.18 | JDDGAC_22910 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.23 | JDDGAC_17350 | cytR | DNA-binding transcriptional regulator CytR | low | > 86 |
| Escherichia coli Nissle 1917 | 0.18 | ECOLIN_RS16390 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.23 | ECOLIN_RS22650 | | DNA-binding transcriptional regulator CytR | 0.49 | 32 |
| Escherichia coli ECOR27 | 0.18 | NOLOHH_11150 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.23 | NOLOHH_05870 | cytR | DNA-binding transcriptional regulator CytR | low | > 75 |
| Escherichia fergusonii Becca | 0.18 | EFB2_00956 | | Ribosomal RNA small subunit methyltransferase E | 0.23 | EFB2_04684 | | HTH-type transcriptional repressor CytR | low | > 86 |
| Escherichia coli BW25113 | 0.18 | b2946 | yggJ | orf, hypothetical protein (VIMSS) | 0.23 | b3934 | cytR | DNA-binding transcriptional dual regulator (NCBI) | low | > 76 |
| Escherichia coli ECRC99 | 0.18 | KEDOAH_08860 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.23 | KEDOAH_14435 | cytR | DNA-binding transcriptional regulator CytR | — | — |
| Escherichia coli ECRC101 | 0.18 | MCAODC_09800 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.23 | MCAODC_04225 | cytR | DNA-binding transcriptional regulator CytR | low | > 87 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.18 | OHPLBJKB_00772 | | Ribosomal RNA small subunit methyltransferase E | 0.23 | OHPLBJKB_04117 | | HTH-type transcriptional repressor CytR | low | > 73 |
| Escherichia coli ECRC102 | 0.18 | NIAGMN_17045 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.23 | NIAGMN_11480 | cytR | DNA-binding transcriptional regulator CytR | — | — |
| Erwinia tracheiphila SCR3 | 0.18 | LU632_RS05485 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.22 | LU632_RS19660 | cytR | DNA-binding transcriptional regulator CytR | low | > 74 |
| Herbaspirillum seropedicae SmR1 | 0.18 | HSERO_RS07110 | | 16S rRNA methyltransferase | 0.26 | HSERO_RS11495 | | LacI family transcription regulator | low | > 78 |
| Escherichia coli BL21 | 0.18 | ECD_02776 | | 16S rRNA m(3)U1498 methyltransferase, SAM-dependent | 0.23 | ECD_03819 | | Anti-activator for CytR-CRP nucleoside utilization regulon | low | > 61 |
| Escherichia coli ECOR38 | 0.18 | HEPCGN_18585 | | Ribosomal RNA small subunit methyltransferase E | 0.23 | HEPCGN_12370 | cytR | DNA-binding transcriptional regulator CytR | low | > 87 |
| Escherichia coli ECRC62 | 0.17 | BNILDI_09730 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.23 | BNILDI_05660 | cytR | DNA-binding transcriptional regulator CytR | low | > 75 |
| Enterobacter asburiae PDN3 | 0.17 | EX28DRAFT_2984 | | RNA methyltransferase, RsmE family | 0.23 | EX28DRAFT_4029 | | transcriptional regulator, LacI family | low | > 76 |
| Shewanella oneidensis MR-1 | 0.17 | SO0832 | | conserved hypothetical protein TIGR00046 (NCBI ptt file) | 0.14 | SO3516 | | transcriptional regulator, LacI family (NCBI ptt file) | low | > 76 |
| Shewanella amazonensis SB2B | 0.17 | Sama_0575 | | 16S ribosomal RNA methyltransferase RsmE (RefSeq) | 0.20 | Sama_0294 | | LacI family transcription regulator (RefSeq) | low | > 62 |
| Dyella japonica UNC79MFTsu3.2 | 0.17 | ABZR86_RS10230 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.25 | ABZR86_RS01690 | | LacI family DNA-binding transcriptional regulator | low | > 74 |
| Ralstonia solanacearum PSI07 | 0.17 | RPSI07_RS11365 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.52 | RPSI07_RS10885 | | LacI family DNA-binding transcriptional regulator | low | > 81 |
| Ralstonia sp. UNC404CL21Col | 0.17 | ABZR87_RS01505 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.51 | ABZR87_RS02035 | | substrate-binding domain-containing protein | low | > 80 |
| Rahnella sp. WP5 | 0.17 | EX31_RS02660 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.25 | EX31_RS06195 | | ribose operon transcriptional repressor RbsR | low | > 89 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.17 | GFF2462 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | 0.19 | GFF4454 | | Transcriptional regulator, LacI family | low | > 90 |
| Rhodanobacter denitrificans FW104-10B01 | 0.17 | LRK54_RS04160 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.20 | LRK54_RS08670 | | LacI family transcriptional regulator | low | > 59 |
| Pantoea sp. MT58 | 0.17 | IAI47_03620 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.25 | IAI47_20330 | | LacI family DNA-binding transcriptional regulator | low | > 76 |
| Burkholderia phytofirmans PsJN | 0.16 | BPHYT_RS16855 | | 16S rRNA methyltransferase | 0.24 | BPHYT_RS04680 | | LacI family transcriptional regulator | low | > 109 |
| Serratia liquefaciens MT49 | 0.16 | IAI46_21385 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.24 | IAI46_25050 | | ribose operon transcriptional repressor RbsR | low | > 86 |
| Rhodanobacter sp. FW510-T8 | 0.16 | OKGIIK_11035 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.18 | OKGIIK_01695 | | Transcriptional regulator | low | > 52 |
| Klebsiella michiganensis M5al | 0.16 | BWI76_RS24070 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.24 | BWI76_RS07435 | | LacI family transcriptional regulator | low | > 92 |
| Paraburkholderia graminis OAS925 | 0.16 | ABIE53_003540 | | 16S rRNA (uracil1498-N3)-methyltransferase | 0.49 | ABIE53_004210 | | LacI family fructose operon transcriptional repressor | low | > 113 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.16 | H281DRAFT_06311 | | 16S rRNA (uracil1498-N3)-methyltransferase | 0.23 | H281DRAFT_00103 | | transcriptional regulator, LacI family | low | > 103 |
| Variovorax sp. SCN45 | 0.15 | GFF3255 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase (EC 2.1.1.193) | 0.23 | GFF3450 | | Transcriptional regulator, LacI family | low | > 127 |
| Dickeya dadantii 3937 | 0.15 | DDA3937_RS18555 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.23 | DDA3937_RS00055 | | ribose operon transcriptional repressor RbsR | low | > 74 |
| Dickeya dianthicola ME23 | 0.15 | DZA65_RS19625 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.21 | DZA65_RS16225 | | LacI family transcriptional regulator | low | > 75 |
| Lysobacter sp. OAE881 | 0.15 | ABIE51_RS05260 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.19 | ABIE51_RS08800 | | LacI family DNA-binding transcriptional regulator | low | > 62 |
| Castellaniella sp019104865 MT123 | 0.15 | ABCV34_RS15445 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.17 | ABCV34_RS08650 | | substrate-binding domain-containing protein | — | — |
| Dickeya dianthicola 67-19 | 0.15 | HGI48_RS18490 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.23 | HGI48_RS21310 | | ribose operon transcriptional repressor RbsR | low | > 71 |
| Vibrio cholerae E7946 ATCC 55056 | 0.15 | CSW01_02495 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.25 | CSW01_13525 | | DNA-binding transcriptional regulator CytR | low | > 62 |