Homologs of RR42_RS12215 from Cupriavidus basilensis FW507-4G11

ribonuclease
SEED: Ribonuclease E inhibitor RraA
KEGG: regulator of ribonuclease activity A

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Cupriavidus basilensis FW507-4G11 RR42_RS12215 ribonuclease insig. 100 100
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS00130 ribonuclease insig. 72 96
o Ralstonia solanacearum UW163 UW163_RS13460 ribonuclease insig. 72 96
o Ralstonia solanacearum PSI07 RPSI07_RS17355 ribonuclease E inhibitor RraA insig. 71 96
o Paraburkholderia sabiae LMG 24235 QEN71_RS06240 ribonuclease E activity regulator RraA insig. 70 99
o Ralstonia sp. UNC404CL21Col ABZR87_RS11580 ribonuclease E activity regulator RraA insig. 69 97
o Herbaspirillum seropedicae SmR1 HSERO_RS10555 ribonuclease insig. 63 99
o Ralstonia solanacearum GMI1000 RS_RS06790 ribonuclease E inhibitor RraA insig. 70 99
o Burkholderia phytofirmans PsJN BPHYT_RS12315 ribonuclease no data 64 99
o Dechlorosoma suillum PS Dsui_0010 RraA family protein cofit 60 99
o Acidovorax sp. GW101-3H11 Ac3H11_2834 Ribonuclease E inhibitor RraA insig. 57 98
o Pseudomonas syringae pv. syringae B728a Psyr_2092 Protein of unknown function 1935 sig. 51 99
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_2092 Protein of unknown function 1935 insig. 51 99
o Pseudomonas fluorescens FW300-N2E3 AO353_00850 ribonuclease activity regulator protein RraA sig. 50 98
o Pseudomonas fluorescens SBW25 PFLU_RS22620 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase strong 49 98
o Pseudomonas fluorescens SBW25-INTG PFLU_RS22620 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase strong 49 98
o Pseudomonas sp. RS175 PFR28_01040 Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase strong 49 98
o Pseudomonas simiae WCS417 PS417_21010 ribonuclease activity regulator protein RraA strong 49 98
o Pseudomonas sp. BP01 JOY50_RS22160 rraA ribonuclease E activity regulator RraA insig. 51 98
o Pseudomonas putida KT2440 PP_2084 Putative regulator of ribonuclease activity sig. 51 98
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2387 Ribonuclease E inhibitor RraA sig. 51 98
o Pseudomonas fluorescens FW300-N2C3 AO356_02815 ribonuclease activity regulator protein RraA sig. 50 98
o Pseudomonas fluorescens GW456-L13 PfGW456L13_4110 Ribonuclease E inhibitor RraA strong 49 98
o Pseudomonas lactucae CFBP13502 GEMAOFIL_04347 Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase cofit 48 98
o Pseudomonas sp. SVBP6 COO64_RS05370 rraA ribonuclease E activity regulator RraA insig. 51 99
o Pseudomonas aeruginosa PA14 IKLFDK_08565 ribonuclease E activity regulator RraA insig. 49 99
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1848.1 Ribonuclease E inhibitor RraA insig. 49 99
o Pseudomonas sp. S08-1 OH686_01650 Ribonuclease E inhibitor RraA strong 48 99
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3828 Ribonuclease E inhibitor RraA strong 48 98
o Pseudomonas sp. DMC3 GFF5238 Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase cofit 48 98
o Pseudomonas stutzeri RCH2 Psest_2315 RraA famliy insig. 47 99
o Lysobacter sp. OAE881 ABIE51_RS04140 ribonuclease E activity regulator RraA no data 49 98
o Azospirillum brasilense Sp245 AZOBR_RS17130 ribonuclease no data 48 94
o Azospirillum sp. SherDot2 MPMX19_04842 Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase insig. 49 93
o Marinobacter adhaerens HP15 HP15_2228 ribonuclease activity regulator protein RraA strong 45 98
o Acinetobacter radioresistens SK82 MPMX26_01316 Putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase insig. 43 98
o Acinetobacter baumannii LAC-4 RR41_RS12280 ribonuclease E activity regulator RraA no data 43 98
o Vibrio cholerae E7946 ATCC 55056 CSW01_11990 ribonuclease activity regulator protein RraA insig. 41 99
o Shewanella loihica PV-4 Shew_2117 ribonuclease activity regulator protein RraA (RefSeq) no data 43 99
  Vibrio cholerae E7946 ATCC 55056 CSW01_13500 ribonuclease E activity regulator RraA insig. 40 99
o Shewanella amazonensis SB2B Sama_1888 ribonuclease activity regulator protein RraA (RefSeq) sig. 47 84
  Mycobacterium tuberculosis H37Rv Rv3853 Regulator of RNase E activity a RraA sig. 44 79
o Serratia liquefaciens MT49 IAI46_24585 ribonuclease E activity regulator RraA insig. 39 99
o Shewanella sp. ANA-3 Shewana3_3723 ribonuclease activity regulator protein RraA (RefSeq) sig. 40 99
o Shewanella oneidensis MR-1 SO4197 menG-2 S-adenosylmethionine:2-demethylmenaquinone methyltransferase (NCBI ptt file) strong 40 99
o Erwinia tracheiphila HP pepo 2.2 IJEDHG_12975 rraA ribonuclease E activity regulator RraA insig. 40 99
o Erwinia tracheiphila SCR3 LU632_RS19685 rraA ribonuclease E activity regulator RraA insig. 40 99
o Escherichia coli BL21 ECD_03814 ribonuclease E (RNase E) inhibitor protein insig. 40 99
o Escherichia fergusonii Becca EFB2_04689 Regulator of ribonuclease activity A insig. 40 99
o Escherichia coli ECOR27 NOLOHH_05895 rraA ribonuclease E activity regulator RraA insig. 40 99
o Escherichia coli ECOR38 HEPCGN_12395 rraA ribonuclease E activity regulator RraA sig. 40 99
o Escherichia coli ECRC100 OKFHMN_13750 rraA ribonuclease E activity regulator RraA cofit 40 99
o Escherichia coli ECRC101 MCAODC_04250 rraA ribonuclease E activity regulator RraA insig. 40 99
o Escherichia coli ECRC102 NIAGMN_11505 rraA ribonuclease E activity regulator RraA cofit 40 99
o Escherichia coli ECRC62 BNILDI_05635 rraA ribonuclease E activity regulator RraA insig. 40 99
o Escherichia coli ECRC98 JDDGAC_17375 rraA ribonuclease E activity regulator RraA insig. 40 99
o Escherichia coli ECRC99 KEDOAH_14410 rraA ribonuclease E activity regulator RraA no data 40 99
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_04122 Regulator of ribonuclease activity A insig. 40 99
o Escherichia coli Nissle 1917 ECOLIN_RS22625 ribonuclease E activity regulator RraA insig. 40 99
o Escherichia coli BW25113 b3929 rraA ribonuclease activity regulator protein RraA (NCBI) strong 40 99
o Pectobacterium carotovorum WPP14 HER17_RS00840 ribonuclease E activity regulator RraA insig. 39 99
  Shewanella loihica PV-4 Shew_3370 ribonuclease activity regulator protein RraA (RefSeq) no data 40 99
o Enterobacter sp. TBS_079 MPMX20_04540 Regulator of ribonuclease activity A insig. 39 99
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2311 Ribonuclease E inhibitor RraA strong 38 99
o Klebsiella michiganensis M5al BWI76_RS00740 ribonuclease E activity regulator RraA sig. 38 99
  Shewanella sp. ANA-3 Shewana3_2373 ribonuclease activity regulator protein RraA (RefSeq) strong 41 95
o Variovorax sp. SCN45 GFF4367 KEGG: regulator of ribonuclease activity A no data 43 97
o Enterobacter asburiae PDN3 EX28DRAFT_4402 regulator of ribonuclease activity A insig. 38 99
o Rahnella sp. WP5 EX31_RS14255 ribonuclease E activity regulator RraA insig. 37 99
o Klebsiella pneumoniae MKP103 KDGMDA_09250 ribonuclease E activity regulator RraA insig. 37 99
  Shewanella oneidensis MR-1 SO2567 menG-1 S-adenosylmethionine:2-demethylmenaquinone methyltransferase (NCBI ptt file) insig. 39 95
  Shewanella amazonensis SB2B Sama_3200 ribonuclease activity regulator protein RraA (RefSeq) strong 38 99
o Dickeya dadantii 3937 DDA3937_RS00905 ribonuclease E activity regulator RraA insig. 39 99
o Dickeya dianthicola 67-19 HGI48_RS20470 ribonuclease E activity regulator RraA insig. 39 99
o Dickeya dianthicola ME23 DZA65_RS21515 ribonuclease E activity regulator RraA insig. 38 99
o Alteromonas macleodii MIT1002 MIT1002_00164 Regulator of ribonuclease activity A cofit 38 99
o Pantoea sp. MT58 IAI47_00840 ribonuclease E activity regulator RraA insig. 39 99
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS18500 ribonuclease E activity regulator RraA cofit 38 99
o Erwinia amylovora T8 OLJFJH_06055 ribonuclease E activity regulator RraA sig. 39 99
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_05962 RraA famliy insig. 35 85
  Pseudomonas fluorescens SBW25 PFLU_RS11340 RraA family protein insig. 33 79
  Pseudomonas fluorescens SBW25-INTG PFLU_RS11340 RraA family protein insig. 33 79
  Pantoea sp. MT58 IAI47_20770 RraA family protein insig. 33 85
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS14360 RraA family protein cofit 33 85
  Enterobacter asburiae PDN3 EX28DRAFT_4072 Demethylmenaquinone methyltransferase insig. 33 82
  Enterobacter sp. TBS_079 MPMX20_04390 4-hydroxy-4-methyl-2-oxoglutarate aldolase/4-carboxy-4-hydroxy-2-oxoadipate aldolase insig. 33 82
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_06498 Regulator of RNase E activity RraA insig. 32 95
  Desulfovibrio vulgaris Miyazaki F DvMF_2302 Dimethylmenaquinone methyltransferase (RefSeq) insig. 33 76
  Variovorax sp. OAS795 ABID97_RS27645 RraA family protein no data 32 81
  Ralstonia solanacearum PSI07 RPSI07_RS02810 RraA family protein insig. 39 66
  Methanococcus maripaludis JJ MMJJ_RS07820 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator sig. 28 95
  Methanococcus maripaludis S2 MMP_RS06530 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator strong 28 95
  Ralstonia solanacearum GMI1000 RS_RS21640 RraA family protein insig. 38 66
  Paraburkholderia graminis OAS925 ABIE53_006318 RraA family protein insig. 33 79
  Ralstonia sp. UNC404CL21Col ABZR87_RS17530 diguanylate cyclase no data 36 67
  Variovorax sp. SCN45 GFF1496 Demethylmenaquinone methyltransferase-like protein no data 31 87
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_06356 RraA famliy insig. 32 79
  Variovorax sp. SCN45 GFF3058 Demethylmenaquinone methyltransferase-like protein insig. 33 78
  Variovorax sp. OAS795 ABID97_RS27355 RraA family protein insig. 35 66
  Cupriavidus basilensis FW507-4G11 RR42_RS26535 diguanylate cyclase insig. 31 86