Homologs of Psyr_1390 from Pseudomonas syringae pv. syringae B728a

RNA-binding S4
SEED: tRNA pseudouridine synthase A (EC 4.2.1.70)
KEGG: ribosomal large subunit pseudouridine synthase F

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Pseudomonas syringae pv. syringae B728a Psyr_1390 RNA-binding S4 insig. 100 100
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_1390 RNA-binding S4 insig. 100 100
o Pseudomonas fluorescens FW300-N2E3 AO353_16865 RNA-binding protein insig. 81 100
o Pseudomonas lactucae CFBP13502 GEMAOFIL_01345 Dual-specificity RNA pseudouridine synthase RluF no data 79 100
o Pseudomonas fluorescens SBW25 PFLU_RS05940 RNA-binding protein S4 insig. 78 100
o Pseudomonas fluorescens SBW25-INTG PFLU_RS05940 RNA-binding protein S4 insig. 78 100
o Pseudomonas simiae WCS417 PS417_05870 RNA-binding protein S4 insig. 78 100
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3158 tRNA pseudouridine synthase A (EC 4.2.1.70) insig. 78 100
o Pseudomonas fluorescens GW456-L13 PfGW456L13_4655 tRNA pseudouridine synthase A (EC 4.2.1.70) insig. 79 100
o Pseudomonas sp. RS175 PFR28_00484 Dual-specificity RNA pseudouridine synthase RluF insig. 78 100
o Pseudomonas fluorescens FW300-N2C3 AO356_05610 RNA-binding protein insig. 78 100
o Pseudomonas sp. DMC3 GFF2124 Ribosomal small subunit pseudouridine synthase A cofit 75 100
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2980 tRNA pseudouridine synthase A (EC 4.2.1.70) insig. 76 90
o Pseudomonas sp. SVBP6 COO64_RS19990 rRNA pseudouridine synthase insig. 63 100
o Pseudomonas segetis P6 MPMX49_03311 hypothetical protein insig. 57 100
o Lysobacter sp. OAE881 ABIE51_RS13020 rRNA pseudouridine synthase insig. 55 100
o Pseudomonas putida KT2440 PP_1191 S4 domain protein insig. 53 100
o Pseudomonas aeruginosa PA14 IKLFDK_05110 RNA-binding protein insig. 53 100
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS18320 rRNA pseudouridine synthase insig. 53 100
o Pseudomonas sp. BP01 JOY50_RS01950 rRNA pseudouridine synthase insig. 52 100
o Rhodanobacter denitrificans MT42 LRK55_RS15640 rRNA pseudouridine synthase insig. 49 100
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS15885 rRNA pseudouridine synthase insig. 49 100
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1469.1 tRNA pseudouridine synthase A (EC 4.2.1.70) insig. 50 100
o Rhodanobacter sp. FW510-T8 OKGIIK_04535 rsuA RNA-binding protein insig. 50 100
o Pseudomonas sp. S08-1 OH686_05400 Pseudouridine synthase insig. 48 100
o Pseudomonas stutzeri RCH2 Psest_2917 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases insig. 50 100
o Acidovorax sp. GW101-3H11 Ac3H11_1984 tRNA pseudouridine synthase A (EC 4.2.1.70) insig. 45 99
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF631 tRNA pseudouridine synthase A (EC 4.2.1.70) insig. 40 99
  Dechlorosoma suillum PS Dsui_2759 pseudouridine synthase family protein insig. 42 98
  Methylophilus sp. DMC18 GFF2067 hypothetical protein insig. 41 98
o Castellaniella sp019104865 MT123 ABCV34_RS03070 pseudouridine synthase insig. 39 99
o Variovorax sp. OAS795 ABID97_RS06090 RNA pseudouridine synthase cofit 41 98
o Herbaspirillum seropedicae SmR1 HSERO_RS10860 RNA pseudouridylate synthase insig. 39 100
  Ralstonia solanacearum GMI1000 RS_RS07030 16S rRNA uridine-516 pseudouridylate synthase sig. 37 98
  Paraburkholderia graminis OAS925 ABIE53_002509 23S rRNA pseudouridine2604 synthase insig. 37 98
o Burkholderia phytofirmans PsJN BPHYT_RS12155 RNA-binding protein S4 insig. 36 98
o Variovorax sp. SCN45 GFF4531 Pseudouridine synthase insig. 36 98
  Cupriavidus basilensis FW507-4G11 RR42_RS11890 16S rRNA pseudouridylate synthase insig. 35 98
  Variovorax sp. OAS795 ABID97_RS00980 pseudouridine synthase strong 36 100
  Ralstonia solanacearum PSI07 RPSI07_RS17115 16S rRNA uridine-516 pseudouridylate synthase cofit 36 98
  Variovorax sp. SCN45 GFF3530 Pseudouridine synthase insig. 35 100
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS00360 16S rRNA pseudouridylate synthase sig. 37 98
  Ralstonia solanacearum UW163 UW163_RS13690 16S rRNA pseudouridylate synthase insig. 37 98
  Ralstonia sp. UNC404CL21Col ABZR87_RS11810 pseudouridine synthase insig. 35 98
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_00606 23S rRNA pseudouridine2604 synthase insig. 36 95
  Acidovorax sp. GW101-3H11 Ac3H11_4641 tRNA pseudouridine synthase A (EC 4.2.1.70) sig. 33 98
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF343 tRNA pseudouridine synthase A (EC 4.2.1.70) cofit 33 98
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS07850 pseudouridine synthase insig. 30 99
o Caulobacter crescentus NA1000 CCNA_00898 ribosomal large subunit pseudouridine synthase F cofit 31 99
o Caulobacter crescentus NA1000 Δfur CCNA_00898 ribosomal large subunit pseudouridine synthase F cofit 31 99
  Paraburkholderia sabiae LMG 24235 QEN71_RS06405 pseudouridine synthase cofit 37 98
  Vibrio cholerae E7946 ATCC 55056 CSW01_11335 23S rRNA pseudouridine(2604) synthase RluF insig. 27 99
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_08930 hypothetical protein insig. 30 98
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_08925 23S rRNA pseudouridine synthase F insig. 26 98
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS11165 pseudouridine synthase no data 26 99
  Desulfovibrio vulgaris Miyazaki F DvMF_0369 pseudouridine synthase (RefSeq) sig. 29 97
  Lysobacter sp. OAE881 ABIE51_RS12720 pseudouridine synthase insig. 27 97
  Marinobacter adhaerens HP15 HP15_886 pseudouridine synthase family 1 protein insig. 29 97
  Fusobacterium nucleatum SB010 HUW76_04625 rRNA pseudouridine synthase cofit 26 97
  Phocaeicola dorei CL03T12C01 ABI39_RS08040 pseudouridine synthase no data 27 99
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0719 pseudouridine synthase no data 26 97
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_1010 pseudouridine synthase insig. 25 98
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS00420 pseudouridine synthase no data 27 99
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_17510 pseudouridylate synthase strong 26 97
  Rhodanobacter sp. FW510-T8 OKGIIK_06590 Pseudouridine synthase insig. 27 97
  Rhizobium sp. OAE497 ABIE40_RS15330 pseudouridine synthase cofit 25 97
  Bacteroides thetaiotaomicron VPI-5482 BT3872 ribosomal large subunit pseudouridine synthase B (NCBI ptt file) no data 24 99
  Rhodanobacter denitrificans MT42 LRK55_RS00435 pseudouridine synthase cofit 26 97
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS00665 rRNA pseudouridine synthase insig. 26 97
  Bacteroides stercoris CC31F HMPREF1181_RS07005 pseudouridine synthase no data 23 99
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS09485 rRNA pseudouridine synthase insig. 25 97
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1843.1 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) insig. 23 97
  Alteromonas macleodii MIT1002 MIT1002_01776 Ribosomal large subunit pseudouridine synthase F insig. 24 98
  Dechlorosoma suillum PS Dsui_0824 pseudouridine synthase family protein insig. 20 92
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS01375 pseudouridine synthase insig. 22 97
  Magnetospirillum magneticum AMB-1 AMB_RS20865 rRNA pseudouridine synthase cofit 27 93
  Enterobacter sp. TBS_079 MPMX20_00237 Dual-specificity RNA pseudouridine synthase RluF insig. 25 99
  Erwinia tracheiphila SCR3 LU632_RS22175 rluF 23S rRNA pseudouridine(2604) synthase RluF insig. 26 97
  Enterobacter asburiae PDN3 EX28DRAFT_4322 pseudouridine synthase insig. 25 99
  Variovorax sp. SCN45 GFF3076 SSU rRNA pseudouridine(516) synthase (EC 5.4.99.19) insig. 23 92
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_08325 rluF 23S rRNA pseudouridine(2604) synthase RluF insig. 26 97
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS18660 pseudouridine synthase no data 24 97
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS08410 pseudouridine synthase insig. 27 97
  Cellulophaga baltica 18 M666_RS02705 pseudouridine synthase no data 23 97
  Rhodanobacter sp. FW510-T8 OKGIIK_16610 Pseudouridine synthase insig. 27 97
  Vibrio cholerae E7946 ATCC 55056 CSW01_08220 16S rRNA pseudouridine(516) synthase insig. 24 97
  Lysobacter sp. OAE881 ABIE51_RS18480 pseudouridine synthase cofit 25 97
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS07735 23S rRNA pseudouridine(2604) synthase RluF cofit 25 99
  Erwinia amylovora T8 OLJFJH_05535 23S rRNA pseudouridine(2604) synthase RluF sig. 26 99
  Pantoea sp. MT58 IAI47_19435 23S rRNA pseudouridine(2604) synthase RluF insig. 25 99
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS25065 pseudouridylate synthase no data 25 97
  Shewanella loihica PV-4 Shew_2975 pseudouridine synthase (RefSeq) insig. 25 97
  Rahnella sp. WP5 EX31_RS06075 23S rRNA pseudouridine(2604) synthase RluF insig. 24 97
  Rhodanobacter denitrificans MT42 LRK55_RS06765 pseudouridine synthase insig. 23 97
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS07025 pseudouridine synthase insig. 23 97
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS16400 pseudouridine synthase cofit 26 97
  Pseudomonas aeruginosa PA14 IKLFDK_03105 Ribosomal small subunit pseudouridine synthase A insig. 25 97
  Serratia liquefaciens MT49 IAI46_21130 23S rRNA pseudouridine(2604) synthase RluF insig. 25 99
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF1362 Ribosomal large subunit pseudouridine synthase F (EC 4.2.1.70) insig. 24 97
  Caulobacter crescentus NA1000 CCNA_01915 ribosomal small subunit pseudouridine synthase A strong 24 96