Homologs of LRK53_RS00650 from Rhodanobacter sp000427505 FW510-R12

RNA polymerase sigma factor
SEED: RNA polymerase sigma-54 factor RpoN
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 100 hits from BLASTp (E < 0.01)

Orth	Species	Gene	Name	Description	Fitness	%Id	Cov
	Rhodanobacter sp000427505 FW510-R12	LRK53_RS00650		RNA polymerase sigma factor	insig.	100	100
o	Rhodanobacter denitrificans MT42	LRK55_RS07625		RNA polymerase sigma factor	insig.	92	99
o	Rhodanobacter denitrificans FW104-10B01	LRK54_RS07895		RNA polymerase sigma factor	insig.	92	99
o	Rhodanobacter sp. FW510-T8	OKGIIK_14380		RNA polymerase sigma factor	insig.	89	100
o	Sinorhizobium meliloti 1021	SM_b20592		RNA polymerase sigma factor	insig.	46	86
o	Paraburkholderia bryophila 376MFSha3.1	H281DRAFT_01538		RNA polymerase sigma-70 factor, ECF subfamily	insig.	45	97
o	Paraburkholderia graminis OAS925	ABIE53_005146		RNA polymerase sigma factor (sigma-70 family)	sig.	47	86
o	Variovorax sp. OAS795	ABID97_RS28845		RNA polymerase sigma factor	insig.	48	85
o	Paraburkholderia sabiae LMG 24235	QEN71_RS18240		RNA polymerase sigma factor	insig.	41	91
o	Castellaniella sp019104865 MT123	ABCV34_RS07155		RNA polymerase sigma factor	insig.	37	94
o	Mucilaginibacter yixingensis YX-36 DSM 26809	ABZR88_RS19220		sigma-70 family RNA polymerase sigma factor	insig.	31	90
	Dechlorosoma suillum PS	Dsui_2453		RNA polymerase sigma factor RpoE	no data	32	81
	Methylophilus sp. DMC18	GFF2730		RNA polymerase sigma-H factor	no data	32	78
	Castellaniella sp019104865 MT123	ABCV34_RS08355		RNA polymerase sigma factor RpoE	strong	33	78
	Herbaspirillum seropedicae SmR1	HSERO_RS09625		RNA polymerase sigma factor RpoE	no data	32	75
	Pseudomonas sp. S08-1	OH686_20045		RNA polymerase sigma factor RpoE	strong	30	82
	Shewanella amazonensis SB2B	Sama_2611		ECF subfamily RNA polymerase sigma-24 factor (RefSeq)	insig.	32	79
	Kangiella aquimarina DSM 16071	B158DRAFT_2180		RNA polymerase, sigma-24 subunit, RpoE	strong	29	75
	Pseudomonas segetis P6	ACVTMO_RS06940	rpoE	RNA polymerase sigma factor RpoE	strong	31	81
	Variovorax sp. SCN45	GFF5806		RNA polymerase ECF-type sigma factor	insig.	35	67
	Pseudomonas sp. SVBP6	COO64_RS16525	rpoE	RNA polymerase sigma factor RpoE	insig.	31	81
	Paraburkholderia sabiae LMG 24235	QEN71_RS04575		RNA polymerase sigma factor RpoE	strong	29	78
	Mucilaginibacter yixingensis YX-36 DSM 26809	ABZR88_RS22010		RNA polymerase sigma factor	insig.	31	80
	Burkholderia phytofirmans PsJN	BPHYT_RS14405		RNA polymerase sigma factor RpoE	no data	29	78
	Paraburkholderia bryophila 376MFSha3.1	H281DRAFT_04355		RNA polymerase, sigma-24 subunit, RpoE	no data	29	78
	Paraburkholderia graminis OAS925	ABIE53_003043		RNA polymerase sigma-70 factor (ECF subfamily)	strong	29	78
	Bacteroides thetaiotaomicron VPI-5482	BT4571		RNA polymerase ECF-type sigma factor (NCBI ptt file)	strong	28	78
	Sphingobium sp. HT1-2	GFF4485		RNA polymerase sigma factor cnrH	cofit	35	78
	Pseudomonas sp. BP01	JOY50_RS14665	rpoE	RNA polymerase sigma factor RpoE	insig.	30	81
	Pseudomonas putida KT2440	PP_1427		RNA polymerase sigma E factor	sig.	30	81
	Enterobacter asburiae PDN3	EX28DRAFT_0072		RNA polymerase sigma factor RpoE	no data	32	76
	Enterobacter sp. TBS_079	MPMX20_03444		ECF RNA polymerase sigma-E factor	no data	32	76
	Lysobacter sp. OAE881	ABIE51_RS13890		RNA polymerase sigma factor RpoE	strong	30	78
	Pseudomonas fluorescens FW300-N2E3	AO353_17625		RNA polymerase subunit sigma	strong	30	81
	Rhodanobacter sp. FW510-T8	OKGIIK_07900	rpoE	RNA polymerase sigma factor RpoE	strong	29	80
	Pseudomonas fluorescens SBW25	PFLU_RS07230		RNA polymerase sigma factor RpoE	sig.	30	81
	Pseudomonas fluorescens SBW25-INTG	PFLU_RS07230		RNA polymerase sigma factor RpoE	strong	30	81
	Pseudomonas sp. DMC3	GFF2277		RNA polymerase sigma-H factor	cofit	30	81
	Pseudomonas lactucae CFBP13502	GEMAOFIL_01572		RNA polymerase sigma-H factor	cofit	30	81
	Pseudomonas sp. RS175	PFR28_00690		RNA polymerase sigma-H factor	strong	30	81
	Pseudomonas orientalis W4I3	QF045_RS09835		RNA polymerase sigma factor RpoE	cofit	30	81
	Pseudomonas simiae WCS417	PS417_07120		RNA polymerase sigma-H factor	strong	30	81
	Pseudomonas fluorescens GW456-L13	PfGW456L13_4516		RNA polymerase sigma-H factor AlgT	sig.	30	81
	Pseudomonas fluorescens FW300-N1B4	Pf1N1B4_3323		RNA polymerase sigma-H factor AlgT	no data	30	81
	Pseudomonas fluorescens FW300-N2C3	AO356_04575		RNA polymerase subunit sigma	strong	30	81
	Pseudomonas fluorescens FW300-N2E2	Pf6N2E2_2756		RNA polymerase sigma-H factor AlgT	strong	30	81
	Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868	GFF2107		RNA polymerase sigma factor RpoE	no data	31	76
	Dickeya dianthicola 67-19	HGI48_RS15850		RNA polymerase sigma factor RpoE	cofit	32	76
	Dickeya dianthicola ME23	DZA65_RS16930		RNA polymerase sigma factor RpoE	strong	32	76
	Rhodanobacter sp000427505 FW510-R12	LRK53_RS12005		RNA polymerase sigma factor RpoE	no data	29	80
	Erwinia tracheiphila SCR3	LU632_RS15425	rpoE	RNA polymerase sigma factor RpoE	strong	29	79
	Ralstonia solanacearum IBSBF1503	RALBFv3_RS14445		RNA polymerase sigma factor RpoE	strong	29	80
	Ralstonia solanacearum GMI1000	RS_RS05225		RNA polymerase sigma factor RpoE	strong	29	80
	Ralstonia solanacearum PSI07	RPSI07_RS19015		RNA polymerase sigma factor RpoE	strong	29	80
	Ralstonia solanacearum UW163	UW163_RS11910		RNA polymerase sigma factor RpoE	insig.	29	80
	Pseudomonas aeruginosa MRSN321	DY961_RS08690	rpoE;go_component=cytoplasm|0005737||IEA;go_function=sigma	RNA polymerase sigma factor RpoE	strong	30	80
	Pseudomonas aeruginosa PA14	IKLFDK_03265		alginate biosynthesis protein AlgZ/FimS	strong	30	80
	Pseudomonas aeruginosa PUPa3	DQ20_RS44160	rpoE;go_component=cytoplasm|0005737||IEA;go_function=sigma	RNA polymerase sigma factor RpoE	strong	30	80
	Pantoea agglomerans CFBP13505 P0401	PagCFBP13505_RS14740		RNA polymerase sigma factor RpoE	no data	31	76
	Ralstonia sp. UNC404CL21Col	ABZR87_RS10165		RNA polymerase sigma factor RpoE	strong	28	82
	Escherichia coli BL21	ECD_02467		RNA polymerase sigma E factor	no data	31	76
	Escherichia fergusonii Becca	EFB2_01323		ECF RNA polymerase sigma-E factor	no data	31	76
	Escherichia coli ECOR27	NOLOHH_13050	rpoE	RNA polymerase sigma factor RpoE	no data	31	76
	Escherichia coli ECOR38	HEPCGN_20520	rpoE	RNA polymerase sigma factor RpoE	no data	31	76
	Escherichia coli ECRC100	OKFHMN_21375	rpoE	RNA polymerase sigma factor RpoE	no data	31	76
	Escherichia coli ECRC101	MCAODC_11905	rpoE	RNA polymerase sigma factor RpoE	no data	31	76
	Escherichia coli ECRC102	NIAGMN_19145	rpoE	RNA polymerase sigma factor RpoE	no data	31	76
	Escherichia coli ECRC62	BNILDI_11850	rpoE	RNA polymerase sigma factor RpoE	no data	31	76
	Escherichia coli ECRC98	JDDGAC_25040	rpoE	RNA polymerase sigma factor RpoE	no data	31	76
	Escherichia coli ECRC99	KEDOAH_06845	rpoE	RNA polymerase sigma factor RpoE	no data	31	76
	Escherichia coli HS(pFamp)R (ATCC 700891)	OHPLBJKB_01134		ECF RNA polymerase sigma-E factor	no data	31	76
	Escherichia coli Nissle 1917	ECOLIN_RS14560		RNA polymerase sigma factor RpoE	no data	31	76
	Escherichia coli BW25113	b2573	rpoE	RNA polymerase, sigma 24 (sigma E) factor (NCBI)	no data	31	76
	Dyella japonica UNC79MFTsu3.2	ABZR86_RS07180		RNA polymerase sigma factor RpoE	strong	29	80
	Erwinia amylovora T8	OLJFJH_10215		RNA polymerase sigma factor RpoE	strong	30	79
	Alteromonas macleodii MIT1002	MIT1002_02719		Sigma-24	no data	28	76
	Dickeya dadantii 3937	DDA3937_RS15765		RNA polymerase sigma factor RpoE	strong	32	76
	Hydrogenophaga sp. GW460-11-11-14-LB1	GFF3339		RNA polymerase sigma factor RpoE	cofit	31	71
	Cupriavidus basilensis FW507-4G11	RR42_RS14080		RNA polymerase sigma factor RpoE	strong	29	75
	Erwinia tracheiphila HP pepo 2.2	IJEDHG_01235	rpoE	RNA polymerase sigma factor RpoE	strong	29	79
	Pantoea sp. MT58	IAI47_04850		RNA polymerase sigma factor RpoE	no data	31	76
	Marinobacter adhaerens HP15	HP15_775		RNA polymerase sigma-70 RpoE type	insig.	30	75
	Rhodanobacter denitrificans MT42	LRK55_RS16655		RNA polymerase sigma factor RpoE	no data	29	80
	Rhodanobacter denitrificans FW104-10B01	LRK54_RS16940		RNA polymerase sigma factor RpoE	strong	29	80
	Pseudomonas syringae pv. syringae B728a	Psyr_3958		RNA polymerase, sigma-24 subunit, RpoE	strong	30	81
	Pseudomonas syringae pv. syringae B728a ΔmexB	Psyr_3958		RNA polymerase, sigma-24 subunit, RpoE	strong	30	81
	Xanthomonas campestris pv. campestris strain 8004	Xcc-8004.3681.1		RNA polymerase sigma factor RpoE	insig.	29	86
	Burkholderia phytofirmans PsJN	BPHYT_RS08845		RNA polymerase sigma factor	insig.	34	71
	Pseudomonas stutzeri RCH2	Psest_3100		RNA polymerase sigma factor RpoE	strong	29	81
	Pseudomonas stutzeri RCH2	Psest_3456		RNA polymerase sigma factor, sigma-70 family	insig.	35	74
	Klebsiella michiganensis M5al	BWI76_RS21355		RNA polymerase sigma factor RpoE	no data	31	76
	Serratia liquefaciens MT49	IAI46_19585		RNA polymerase sigma factor RpoE	no data	31	76
	Shewanella oneidensis MR-1	SO3840		RNA polymerase sigma-70 factor, ECF subfamily (NCBI ptt file)	insig.	28	81
	Vibrio cholerae E7946 ATCC 55056	CSW01_12485		RNA polymerase sigma factor RpoE	no data	26	76
	Pedobacter sp. GW460-11-11-14-LB5	CA265_RS19950		RNA polymerase subunit sigma-24	insig.	31	77
	Klebsiella pneumoniae MKP103	KDGMDA_28480		RNA polymerase sigma factor RpoE	no data	31	76
	Shewanella sp. ANA-3	Shewana3_0763		ECF subfamily RNA polymerase sigma-24 factor (RefSeq)	insig.	30	79
	Variovorax sp. OAS795	ABID97_RS08330		RNA polymerase sigma factor RpoE	strong	28	82
	Shewanella loihica PV-4	Shew_1048		RNA polymerase sigma factor RpoE (RefSeq)	cofit	26	79
	Pectobacterium carotovorum WPP14	HER17_RS05780		RNA polymerase sigma factor RpoE	no data	31	76