Homologs of HSERO_RS05705 from Herbaspirillum seropedicae SmR1

endoribonuclease L-PSP
SEED: Putative translation initiation inhibitor, yjgF family

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Herbaspirillum seropedicae SmR1 HSERO_RS05705 endoribonuclease L-PSP insig. 100 100
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_06511 reactive intermediate/imine deaminase insig. 70 98
o Ralstonia sp. UNC404CL21Col ABZR87_RS05790 RidA family protein insig. 63 93
o Burkholderia phytofirmans PsJN BPHYT_RS15355 endoribonuclease L-PSP insig. 67 90
  Burkholderia phytofirmans PsJN BPHYT_RS29300 endoribonuclease L-PSP insig. 65 90
o Cupriavidus basilensis FW507-4G11 RR42_RS33455 endoribonuclease L-PSP insig. 68 88
o Variovorax sp. OAS795 ABID97_RS21535 RidA family protein no data 64 86
o Ralstonia solanacearum GMI1000 RS_RS24425 RidA family protein insig. 56 86
o Ralstonia solanacearum PSI07 RPSI07_RS06815 RidA family protein insig. 56 86
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS16635 RidA family protein insig. 56 86
o Ralstonia solanacearum UW163 UW163_RS17990 RidA family protein insig. 56 86
  Ralstonia sp. UNC404CL21Col ABZR87_RS17675 RidA family protein insig. 55 83
o Pseudomonas fluorescens FW300-N2C3 AO356_26795 reactive intermediate/imine deaminase insig. 50 86
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_4209 Translation initiation inhibitor insig. 50 82
o Pseudomonas syringae pv. syringae B728a Psyr_3399 Endoribonuclease L-PSP insig. 50 83
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3399 Endoribonuclease L-PSP insig. 50 83
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_353 Bona fide RidA/YjgF/TdcF/RutC subgroup insig. 47 82
o Paraburkholderia sabiae LMG 24235 QEN71_RS38550 RidA family protein insig. 41 82
o Pseudomonas fluorescens SBW25 PFLU_RS13590 RidA family protein insig. 45 88
o Pseudomonas fluorescens SBW25-INTG PFLU_RS13590 RidA family protein insig. 45 88
o Pseudomonas simiae WCS417 PS417_12920 endoribonuclease insig. 46 80
o Paraburkholderia graminis OAS925 ABIE53_003968 2-iminobutanoate/2-iminopropanoate deaminase insig. 42 81
  Paraburkholderia sabiae LMG 24235 QEN71_RS19585 RidA family protein insig. 42 81
o Bacteroides thetaiotaomicron VPI-5482 BT1336 putative translation initiation inhibitor (NCBI ptt file) strong 40 81
o Bacteroides ovatus ATCC 8483 BACOVA_00589 putative endoribonuclease L-PSP cofit 39 81
  Bacteroides stercoris CC31F HMPREF1181_RS10885 RidA family protein strong 38 81
  Azospirillum brasilense Sp245 AZOBR_RS32435 dfrA insig. 35 78
o Marinobacter adhaerens HP15 HP15_306 YjgF-like protein strong 32 80
  Shewanella sp. ANA-3 Shewana3_2971 putative endoribonuclease L-PSP (RefSeq) sig. 31 79
  Alteromonas macleodii MIT1002 MIT1002_00109 Putative reactive intermediate deaminase TdcF strong 32 77
  Pseudomonas putida KT2440 PP_2247 putative Endoribonuclease insig. 30 89
  Desulfovibrio vulgaris Hildenborough JW710 DVU2647 endoribonuclease, L-PSP family (TIGR) sig. 35 86
  Shewanella oneidensis MR-1 SO1404 endoribonuclease L-PSP, putative (NCBI ptt file) insig. 30 79
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS17245 RidA family protein no data 31 82
  Pseudomonas stutzeri RCH2 Psest_3818 endoribonuclease L-PSP, putative strong 30 80
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS18400 RidA family protein strong 33 80
  Desulfovibrio vulgaris Hildenborough JW710 DVU0620 endoribonuclease, L-PSP family (TIGR) insig. 32 89
  Desulfovibrio vulgaris Hildenborough JW710 DVU2203 endoribonuclease, L-PSP family (TIGR) sig. 35 86
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS11845 RidA family protein strong 30 80
  Pseudomonas fluorescens GW456-L13 PfGW456L13_779 Bona fide RidA/YjgF/TdcF/RutC subgroup strong 30 80
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_2112 Bona fide RidA/YjgF/TdcF/RutC subgroup strong 30 80
  Pseudomonas fluorescens FW300-N2E3 AO353_09285 reactive intermediate/imine deaminase strong 30 80
  Pseudomonas fluorescens FW300-N2C3 AO356_12475 reactive intermediate/imine deaminase strong 30 80
  Phocaeicola dorei CL03T12C01 ABI39_RS14715 RidA family protein strong 33 80
o Desulfovibrio vulgaris Miyazaki F DvMF_1512 endoribonuclease L-PSP (RefSeq) no data 36 76
  Pseudomonas sp. RS175 PFR28_04425 2-iminobutanoate/2-iminopropanoate deaminase strong 30 80
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_4360 Bona fide RidA/YjgF/TdcF/RutC subgroup strong 30 80
  Azospirillum sp. SherDot2 MPMX19_04018 2-aminomuconate deaminase insig. 31 83
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_179 Endoribonuclease L-PSP no data 38 85
  Rhodanobacter sp. FW510-T8 OKGIIK_12095 ridA reactive intermediate/imine deaminase cofit 31 80
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_17590 RidA family protein sig. 28 80
  Lysobacter sp. OAE881 ABIE51_RS17260 RidA family protein strong 31 80
  Rhodanobacter denitrificans MT42 LRK55_RS11525 RidA family protein cofit 31 80
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS11800 RidA family protein strong 31 80
  Pseudomonas putida KT2440 PP_5303 aminoacrylate/iminopropionate hydrolase/deaminase strong 30 80
  Pseudomonas fluorescens SBW25 PFLU_RS29515 RidA family protein strong 29 80
  Pseudomonas fluorescens SBW25-INTG PFLU_RS29515 RidA family protein strong 29 80
  Pseudomonas simiae WCS417 PS417_27835 endoribonuclease strong 29 80
o Kangiella aquimarina DSM 16071 B158DRAFT_0573 endoribonuclease L-PSP, putative sig. 31 80
  Pseudomonas fluorescens GW456-L13 PfGW456L13_2329 Endoribonuclease L-PSP insig. 39 85
  Dinoroseobacter shibae DFL-12 Dshi_0720 Endoribonuclease L-PSP (RefSeq) sig. 34 81
  Variovorax sp. OAS795 ABID97_RS26145 RidA family protein insig. 35 88
  Fusobacterium nucleatum SB010 HUW76_10065 RidA family protein strong 30 88
  Sinorhizobium meliloti 1021 SMa2289 hypothetical protein insig. 32 78
  Pseudomonas syringae pv. syringae B728a Psyr_0208 endoribonuclease L-PSP strong 29 80
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_0208 endoribonuclease L-PSP strong 29 80
  Pseudomonas sp. S08-1 OH686_13545 RidA/YER057c/UK114 superfamily protein strong 28 80
  Pseudomonas sp. S08-1 OH686_13690 RidA/YER057c/UK114 superfamily, group 2, YoaB-like protein insig. 41 67
  Synechococcus elongatus PCC 7942 Synpcc7942_0972 YjgF-like protein strong 34 82
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS07390 RidA family protein insig. 33 96
o Sphingomonas koreensis DSMZ 15582 Ga0059261_1670 Putative translation initiation inhibitor, yjgF family insig. 35 84
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_05869 2-iminobutanoate/2-iminopropanoate deaminase strong 33 77
  Paraburkholderia sabiae LMG 24235 QEN71_RS41190 RidA family protein no data 31 84
  Pseudomonas putida KT2440 PP_3522 conserved protein of unknown function insig. 34 92
  Pseudomonas fluorescens FW300-N2E3 AO353_24440 reactive intermediate/imine deaminase insig. 32 80
  Shewanella amazonensis SB2B Sama_0263 YjgF-like protein (RefSeq) strong 27 77
  Shewanella sp. ANA-3 Shewana3_3813 putative endoribonuclease L-PSP (RefSeq) cofit 26 77
  Shewanella oneidensis MR-1 SO0358 endoribonuclease L-PSP, putative (NCBI ptt file) strong 26 77
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_1327 endoribonuclease L-PSP, putative sig. 27 81
  Azospirillum brasilense Sp245 AZOBR_RS04910 endoribonuclease L-PSP insig. 37 78
  Paraburkholderia sabiae LMG 24235 QEN71_RS09605 RidA family protein insig. 32 80
  Variovorax sp. SCN45 GFF6707 RidA/YER057c/UK114 superfamily protein insig. 28 78
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS20925 endoribonuclease L-PSP strong 34 79
  Ralstonia solanacearum UW163 UW163_RS22060 endoribonuclease L-PSP insig. 34 79
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1205.1 hypothetical protein cofit 28 80
  Sinorhizobium meliloti 1021 SM_b20376 hypothetical protein insig. 36 61
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS16200 RidA family protein no data 33 79
  Ralstonia solanacearum UW163 UW163_RS16935 RidA family protein no data 33 79
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS04075 RidA family protein insig. 36 87
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF928 Endoribonuclease L-PSP strong 33 72
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS02020 RidA family protein insig. 33 80
  Caulobacter crescentus NA1000 CCNA_02886 RutC-family pyrimidine utilization protein C sig. 25 86
  Caulobacter crescentus NA1000 Δfur CCNA_02886 RutC-family pyrimidine utilization protein C cofit 25 86
  Cupriavidus basilensis FW507-4G11 RR42_RS16710 endoribonuclease L-PSP insig. 27 86
  Dechlorosoma suillum PS Dsui_1999 putative translation initiation inhibitor, yjgF family insig. 42 55
  Variovorax sp. OAS795 ABID97_RS21695 RidA family protein no data 35 80
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS08910 RidA family protein insig. 33 82
  Castellaniella sp019104865 MT123 ABCV34_RS03565 Rid family detoxifying hydrolase no data 30 78
  Burkholderia phytofirmans PsJN BPHYT_RS10240 translation initiation inhibitor insig. 33 65
o Klebsiella michiganensis M5al BWI76_RS02985 reactive intermediate/imine deaminase strong 34 80