Homologs of HMPREF1078_RS04805 from Parabacteroides merdae CL09T00C40

UvrD-helicase domain-containing protein
SEED: FIG003033: Helicase domain protein

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS04805 UvrD-helicase domain-containing protein strong 100 100
o Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_4051 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) insig. 34 100
o Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS03535 UvrD-helicase domain-containing protein cofit 33 100
o Phocaeicola dorei CL03T12C01 ABI39_RS17615 UvrD-helicase domain-containing protein no data 33 100
o Bacteroides ovatus ATCC 8483 BACOVA_04090 UvrD/REP helicase no data 33 100
o Bacteroides thetaiotaomicron VPI-5482 BT1054 ATP-dependent helicase (NCBI ptt file) no data 34 100
o Bacteroides stercoris CC31F HMPREF1181_RS15235 UvrD-helicase domain-containing protein cofit 32 100
o Pedobacter sp. GW460-11-11-14-LB5 CA265_RS18830 DNA helicase UvrD strong 31 100
o Pontibacter actiniarum KMM 6156, DSM 19842 CA264_05920 hypothetical protein no data 26 100
  Desulfovibrio vulgaris Hildenborough JW710 DVU2062 ATP-dependent DNA helicase, UvrD/REP family (TIGR) sig. 26 53
  Desulfovibrio vulgaris Miyazaki F DvMF_0764 UvrD/REP helicase (RefSeq) insig. 28 42
  Shewanella loihica PV-4 Shew_2130 exodeoxyribonuclease V, beta subunit (RefSeq) no data 23 72
  Variovorax sp. OAS795 ABID97_RS18290 UvrD-helicase domain-containing protein insig. 22 77
  Ralstonia sp. UNC404CL21Col ABZR87_RS10785 exodeoxyribonuclease V subunit beta strong 25 44
  Ralstonia solanacearum PSI07 RPSI07_RS18225 ATP-dependent exonuclease no data 24 44
  Agrobacterium fabrum C58 Atu0023 ATP-dependant DNA helicase no data 25 40
  Rhizobium sp. OAE497 ABIE40_RS19360 double-strand break repair helicase AddA strong 25 40
  Kangiella aquimarina DSM 16071 B158DRAFT_2168 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) strong 24 64
  Dinoroseobacter shibae DFL-12 Dshi_3438 Double-strand break repair helicase AddA (RefSeq) no data 25 47
  Rhodopseudomonas palustris CGA009 TX73_000385 double-strand break repair helicase AddA cofit 26 40
  Sphingomonas koreensis DSMZ 15582 Ga0059261_4027 DNA helicase/exodeoxyribonuclease V, subunit A (EC 3.1.11.5) no data 23 64
  Escherichia coli ECRC101 OKFHMN_20050 recB exodeoxyribonuclease V subunit beta no data 23 39
  Escherichia coli ECRC101 MCAODC_10575 recB exodeoxyribonuclease V subunit beta no data 23 39
  Escherichia coli ECRC102 NIAGMN_17820 recB exodeoxyribonuclease V subunit beta no data 23 39
  Escherichia coli ECRC98 JDDGAC_23715 recB exodeoxyribonuclease V subunit beta no data 23 39
  Escherichia coli ECRC99 KEDOAH_08080 recB exodeoxyribonuclease V subunit beta no data 23 39
  Shewanella sp. ANA-3 Shewana3_2246 exodeoxyribonuclease V, beta subunit (RefSeq) no data 23 40
  Cupriavidus basilensis FW507-4G11 RR42_RS13295 ATP-dependent exonuclease no data 22 41
  Rhodopseudomonas palustris CGA009 TX73_014510 ATP-dependent helicase insig. 26 28
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_5515 ATP-dependent DNA helicase pcrA (EC 3.6.1.-) insig. 24 71
  Escherichia coli ECOR38 HEPCGN_19305 recB exodeoxyribonuclease V subunit beta cofit 23 39
  Escherichia coli Nissle 1917 ECOLIN_RS15830 exodeoxyribonuclease V subunit beta no data 23 39
  Escherichia fergusonii Becca EFB2_01064 RecBCD enzyme subunit RecB strong 23 39
  Escherichia coli ECOR27 NOLOHH_11935 recB exodeoxyribonuclease V subunit beta no data 23 39
  Shewanella oneidensis MR-1 SO2148 recB exodeoxyribonuclease V, beta subunit (NCBI ptt file) no data 24 40
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00910 RecBCD enzyme subunit RecB no data 23 39
  Escherichia coli BW25113 b2820 recB exonuclease V (RecBCD complex), beta subunit (NCBI) strong 23 39
  Bosea sp. OAE506 ABIE41_RS02725 double-strand break repair helicase AddA strong 24 44
  Escherichia coli ECRC62 BNILDI_10415 recB exodeoxyribonuclease V subunit beta no data 23 39
  Escherichia coli BL21 ECD_02668 exonuclease V (RecBCD complex), beta subunit no data 23 39
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF1301 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) no data 23 39
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF4243 ATP-dependent DNA helicase pcrA (EC 3.6.1.-) strong 23 40
  Erwinia tracheiphila SCR3 LU632_RS06190 recB exodeoxyribonuclease V subunit beta no data 26 34
  Serratia liquefaciens MT49 IAI46_20405 exodeoxyribonuclease V subunit beta no data 24 34
  Shewanella loihica PV-4 Shew_3385 uvrD DNA-dependent helicase II (RefSeq) strong 23 38
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS15145 ATP-dependent exonuclease no data 27 15
  Ralstonia solanacearum UW163 UW163_RS12615 ATP-dependent exonuclease no data 27 15
  Magnetospirillum magneticum AMB-1 AMB_RS21065 double-strand break repair helicase AddA no data 34 12
  Serratia liquefaciens MT49 IAI46_00735 DNA helicase II strong 23 38
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0292 Superfamily I DNA and RNA helicases no data 23 36
  Desulfovibrio vulgaris Miyazaki F DvMF_0764 UvrD/REP helicase (RefSeq) insig. 34 11
  Fusobacterium nucleatum SB010 HUW76_07175 UvrD-helicase domain-containing protein strong 22 38
  Agrobacterium fabrum C58 Atu4619 ATP-dependent DNA helicase insig. 24 28
  Dechlorosoma suillum PS Dsui_3214 ATP-dependent exonuclase V beta subunit, helicase and exonuclease domain-containing no data 33 10
  Bosea sp. OAE506 ABIE41_RS01165 ATP-dependent helicase insig. 28 26
  Ralstonia solanacearum GMI1000 RS_RS05965 ATP-dependent exonuclease no data 28 12
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04321 DNA helicase-2 / ATP-dependent DNA helicase PcrA insig. 27 27
  Klebsiella michiganensis M5al BWI76_RS23230 exodeoxyribonuclease V subunit beta strong 24 44
  Ralstonia sp. UNC404CL21Col ABZR87_RS10785 exodeoxyribonuclease V subunit beta strong 25 30
  Magnetospirillum magneticum AMB-1 AMB_RS21065 double-strand break repair helicase AddA no data 35 10
  Pantoea sp. MT58 IAI47_03965 exodeoxyribonuclease V subunit beta no data 34 13
  Rhizobium sp. OAE497 ABIE40_RS02665 ATP-dependent helicase insig. 26 26
  Variovorax sp. OAS795 ABID97_RS04485 ATP-dependent helicase insig. 24 27
  Rahnella sp. WP5 EX31_RS15175 DNA helicase II insig. 23 38
  Paraburkholderia sabiae LMG 24235 QEN71_RS04400 ATP-dependent helicase insig. 26 27
  Pseudomonas stutzeri RCH2 Psest_0213 exodeoxyribonuclease V, beta subunit no data 23 47
  Desulfovibrio vulgaris Hildenborough JW710 DVU2062 ATP-dependent DNA helicase, UvrD/REP family (TIGR) sig. 34 10
  Fusobacterium nucleatum SB010 HUW76_05850 UvrD-helicase domain-containing protein cofit 25 19
  Caulobacter crescentus NA1000 CCNA_03652 ATP-dependent nuclease subunit A strong 32 12
  Caulobacter crescentus NA1000 Δfur CCNA_03652 ATP-dependent nuclease subunit A cofit 32 12
  Paraburkholderia graminis OAS925 ABIE53_003077 DNA helicase-2/ATP-dependent DNA helicase PcrA insig. 26 27
  Enterobacter asburiae PDN3 EX28DRAFT_2895 DNA helicase/exodeoxyribonuclease V, beta subunit (EC 3.1.11.5) no data 29 19
  Phaeobacter inhibens DSM 17395 PGA1_c35310 double strand break repair helicase AddA no data 32 9
  Pseudomonas putida KT2440 PP_5352 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex strong 23 38
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS11290 double-strand break repair helicase AddA insig. 29 16
  Burkholderia phytofirmans PsJN BPHYT_RS14580 ATP-dependent DNA helicase insig. 26 27
  Cupriavidus basilensis FW507-4G11 RR42_RS01715 ATP-dependent DNA helicase insig. 25 30
  Mycobacterium tuberculosis H37Rv Rv0630c Probable exonuclease V (beta chain) RecB (exodeoxyribonuclease V beta chain)(exodeoxyribonuclease V polypeptide) (chi-specific endonuclease) insig. 28 13
  Shewanella amazonensis SB2B Sama_0419 uvrD DNA-dependent helicase II (RefSeq) strong 24 34
  Pseudomonas sp. RS175 PFR28_04523 DNA helicase II sig. 34 12
  Rhodospirillum rubrum S1H Rru_A3434 UvrD/REP helicase (NCBI) no data 30 15
  Vibrio cholerae E7946 ATCC 55056 CSW01_01015 DNA helicase II strong 22 38
  Enterobacter sp. TBS_079 MPMX20_03683 RecBCD enzyme subunit RecB strong 37 8
  Phaeobacter inhibens DSM 17395 PGA1_c09450 DNA helicase II UvrD strong 33 10
  Pseudomonas stutzeri RCH2 Psest_4098 Superfamily I DNA and RNA helicases strong 33 13
  Sinorhizobium meliloti 1021 SMa2321 UvrD2 DNA helicase insig. 25 28
  Fusobacterium nucleatum SB010 HUW76_07455 ATP-dependent helicase cofit 35 9
  Shewanella sp. ANA-3 Shewana3_0469 uvrD DNA-dependent helicase II (RefSeq) strong 23 38
  Burkholderia phytofirmans PsJN BPHYT_RS07975 exodeoxyribonuclease V subunit beta no data 28 21
  Pseudomonas fluorescens FW300-N2E3 AO353_10055 DNA helicase II strong 34 12
  Synechococcus elongatus PCC 7942 Synpcc7942_2168 pcrA ATP-dependent DNA helicase, Rep family insig. 34 8
  Pseudomonas fluorescens FW300-N2C3 AO356_11990 DNA helicase II strong 34 12
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_4273 ATP-dependent DNA helicase UvrD/PcrA strong 34 12
  Caulobacter crescentus NA1000 CCNA_03652 ATP-dependent nuclease subunit A strong 30 12
  Caulobacter crescentus NA1000 Δfur CCNA_03652 ATP-dependent nuclease subunit A cofit 30 12
  Erwinia tracheiphila SCR3 LU632_RS24125 uvrD DNA helicase II no data 23 38
  Azospirillum sp. SherDot2 MPMX19_02722 ATP-dependent helicase/nuclease subunit A no data 32 13
  Variovorax sp. SCN45 GFF7292 ATP-dependent DNA helicase UvrD/PcrA, proteobacterial paralog insig. 25 26
  Desulfovibrio vulgaris Miyazaki F DvMF_0764 UvrD/REP helicase (RefSeq) insig. 29 13
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS07840 ATP-dependent helicase no data 23 37