| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Pseudomonas stutzeri RCH2 | Psest_1344 | | rRNA methylases | sig. | 100 | 100 |
| o | Pseudomonas sp. S08-1 | OH686_23810 | | Uncharacterized RNA methyltransferase YsgA | insig. | 82 | 100 |
| o | Marinobacter adhaerens HP15 | HP15_3616 | | tRNA/rRNA methyltransferase (SpoU) | sig. | 71 | 100 |
| o | Alteromonas macleodii MIT1002 | MIT1002_02899 | | 23S rRNA (guanosine-2'-O-)-methyltransferase | insig. | 57 | 100 |
| o | Pedobacter sp. GW460-11-11-14-LB5 | CA265_RS13975 | | RNA methyltransferase | sig. | 31 | 98 |
| o | Mucilaginibacter yixingensis YX-36 DSM 26809 | ABZR88_RS12025 | | RNA methyltransferase | sig. | 29 | 96 |
| o | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_3716 | | rRNA methylases | insig. | 34 | 98 |
| o | Dechlorosoma suillum PS | Dsui_2679 | | rRNA methylase | strong | 31 | 99 |
| o | Mycobacterium tuberculosis H37Rv | Rv1644 | | Possible 23S rRNA methyltransferase TsnR | sig. | 32 | 97 |
| o | Cellulophaga baltica 18 | M666_RS08575 | | RNA methyltransferase | insig. | 30 | 98 |
| o | Synechococcus elongatus PCC 7942 | Synpcc7942_1199 | | probable tRNA/rRNA methyltransferase | sig. | 32 | 93 |
| o | Vibrio cholerae E7946 ATCC 55056 | CSW01_04150 | | RNA methyltransferase | cofit | 30 | 98 |
| o | Synechocystis sp000284455 PCC 6803 | SGL_RS11100 | | RNA methyltransferase | cofit | 32 | 99 |
| o | Bacteroides stercoris CC31F | HMPREF1181_RS14605 | | RNA methyltransferase | insig. | 30 | 96 |
| o | Paraburkholderia sabiae LMG 24235 | QEN71_RS06495 | | RNA methyltransferase | insig. | 32 | 96 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS10950 | | RNA methyltransferase | insig. | 30 | 99 |
| o | Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_05700 | | RNA methyltransferase | sig. | 28 | 98 |
| o | Parabacteroides merdae CL09T00C40 | HMPREF1078_RS14990 | | RNA methyltransferase | insig. | 31 | 98 |
| o | Agrobacterium fabrum C58 | Atu0341 | | rRNA methylase | no data | 30 | 99 |
| o | Ralstonia sp. UNC404CL21Col | ABZR87_RS11900 | | RNA methyltransferase | insig. | 28 | 99 |
| o | Rhizobium sp. OAE497 | ABIE40_RS01810 | | RNA methyltransferase | insig. | 29 | 99 |
| o | Paraburkholderia graminis OAS925 | ABIE53_002488 | | TrmH family RNA methyltransferase | sig. | 31 | 96 |
| | Castellaniella sp019104865 MT123 | ABCV34_RS04035 | | RNA methyltransferase | insig. | 38 | 57 |
| o | Phocaeicola dorei CL03T12C01 | ABI39_RS15420 | | RNA methyltransferase | insig. | 28 | 98 |
| o | Sinorhizobium meliloti 1021 | SMc01130 | | tRNA/rRNA methyltransferase | no data | 28 | 98 |
| o | Sphingomonas koreensis DSMZ 15582 | Ga0059261_0920 | | rRNA methylases | strong | 29 | 97 |
| o | Phocaeicola vulgatus CL09T03C04 | HMPREF1058_RS01645 | | RNA methyltransferase | strong | 28 | 98 |
| o | Methylophilus sp. DMC18 | GFF99 | | 23S rRNA (uridine(2479)-2'-O)-methyltransferase | insig. | 31 | 99 |
| o | Burkholderia phytofirmans PsJN | BPHYT_RS12065 | | RNA methyltransferase | insig. | 30 | 96 |
| o | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_00625 | | RNA methyltransferase, TrmH family | insig. | 29 | 96 |
| o | Caulobacter crescentus NA1000 | CCNA_01245 | | 23S rRNA methyltransferase | sig. | 25 | 98 |
| o | Caulobacter crescentus NA1000 Δfur | CCNA_01245 | | 23S rRNA methyltransferase | insig. | 25 | 98 |
| o | Bacteroides ovatus ATCC 8483 | BACOVA_02546 | | RNA methyltransferase, TrmH family | insig. | 28 | 98 |
| | Acinetobacter radioresistens SK82 | MPMX26_02198 | | 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB | insig. | 25 | 97 |
| o | Bacteroides thetaiotaomicron VPI-5482 | BT0811 | | putative tRNA/rRNA methyltransferase (NCBI ptt file) | strong | 31 | 98 |
| | Acinetobacter baumannii LAC-4 | RR41_RS04635 | | RNA methyltransferase | insig. | 26 | 100 |
| o | Acidovorax sp. GW101-3H11 | Ac3H11_433 | | 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-) | insig. | 29 | 96 |
| o | Variovorax sp. OAS795 | ABID97_RS17095 | | RNA methyltransferase | no data | 30 | 98 |
| | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS00450 | | RNA methyltransferase | no data | 32 | 57 |
| | Ralstonia solanacearum UW163 | UW163_RS13780 | | RNA methyltransferase | no data | 32 | 57 |
| | Ralstonia solanacearum GMI1000 | RS_RS07120 | | RNA methyltransferase | no data | 29 | 74 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS11800 | | RNA methyltransferase | insig. | 33 | 57 |
| o | Variovorax sp. SCN45 | GFF378 | | RNA (nucleoside 2'-O)-methyltransferase | insig. | 30 | 98 |
| | Sphingobium sp. HT1-2 | GFF3816 | | RNA methyltransferase Atu0341 | cofit | 28 | 97 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS17025 | | RNA methyltransferase | insig. | 31 | 57 |
| | Brevundimonas sp. GW460-12-10-14-LB2 | A4249_RS05435 | | RNA methyltransferase | no data | 26 | 96 |
| o | Bifidobacterium breve UCC2003 | BBR_RS13865 | | RNA methyltransferase | sig. | 26 | 98 |
| | Azospirillum brasilense Sp245 | AZOBR_RS16105 | | RNA methyltransferase | strong | 31 | 79 |
| o | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF4900 | | 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-) | no data | 29 | 94 |
| | Azospirillum sp. SherDot2 | MPMX19_01597 | | 23S rRNA (uridine(2479)-2'-O)-methyltransferase | insig. | 29 | 70 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS12425 | | RNA methyltransferase | insig. | 32 | 59 |
| | Azospirillum sp. SherDot2 | MPMX19_02245 | | putative tRNA/rRNA methyltransferase YfiF | no data | 32 | 73 |
| | Azospirillum brasilense Sp245 | AZOBR_RS12835 | | RNA methyltransferase | insig. | 29 | 77 |
| | Cellulophaga baltica 18 | M666_RS10925 | | RNA methyltransferase | insig. | 25 | 74 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_09750 | | rRNA methylase | insig. | 31 | 57 |
| | Azospirillum sp. SherDot2 | MPMX19_00824 | | 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB | insig. | 26 | 99 |
| | Bacteroides stercoris CC31F | HMPREF1181_RS13700 | | RNA methyltransferase | insig. | 30 | 52 |
| | Bacteroides ovatus ATCC 8483 | BACOVA_05337 | | RNA methyltransferase, TrmH family | insig. | 28 | 57 |
| | Pedobacter sp. GW460-11-11-14-LB5 | CA265_RS08890 | | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | strong | 24 | 69 |
| | Pantoea sp. MT58 | IAI47_00750 | | tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL | insig. | 32 | 57 |
| | Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.1266.1 | | hypothetical tRNA/rRNA methyltransferase yfiF [EC:2.1.1.-] | insig. | 28 | 71 |
| | Pantoea agglomerans CFBP13505 P0401 | PagCFBP13505_RS18595 | | tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL | cofit | 32 | 57 |
| | Pseudomonas sp. DMC3 | GFF4085 | | tRNA (cytidine(34)-2'-O)-methyltransferase | cofit | 29 | 57 |
| | Bifidobacterium breve UCC2003 | BBR_RS20270 | | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | no data | 30 | 57 |
| | Pseudomonas sp. RS175 | PFR28_04942 | | 'tRNA (cytidine(34)-2'-O)-methyltransferase' transl_table=11 | insig. | 29 | 57 |
| | Pseudomonas orientalis W4I3 | QF045_RS04695 | | tRNA (cytidine(34)-2'-O)-methyltransferase | insig. | 29 | 56 |
| | Brevundimonas sp. GW460-12-10-14-LB2 | A4249_RS08470 | | RNA methyltransferase | insig. | 23 | 97 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_00545 | | 'tRNA (cytidine(34)-2'-O)-methyltransferase' transl_table=11 | cofit | 28 | 56 |
| | Erwinia tracheiphila HP pepo 2.2 | IJEDHG_07930 | trmL | tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine(34)-2'-O)-methyltransferase TrmL | cofit | 33 | 57 |
| | Erwinia tracheiphila SCR3 | LU632_RS21865 | trmL | tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL | insig. | 33 | 57 |
| | Sphingomonas koreensis DSMZ 15582 | Ga0059261_3218 | | Predicted rRNA methylase (SpoU class) | insig. | 29 | 52 |
| | Serratia liquefaciens MT49 | IAI46_24670 | | tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL | insig. | 32 | 57 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_3828 | | tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) | strong | 29 | 57 |
| | Caulobacter crescentus NA1000 | CCNA_01297 | | 23S rRNA Gm2251 methyltransferase | strong | 29 | 65 |
| | Caulobacter crescentus NA1000 Δfur | CCNA_01297 | | 23S rRNA Gm2251 methyltransferase | cofit | 29 | 65 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS01675 | | tRNA (cytidine(34)-2'-O)-methyltransferase | insig. | 29 | 56 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS01675 | | tRNA (cytidine(34)-2'-O)-methyltransferase | insig. | 29 | 56 |
| | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_3316 | | rRNA methylases | insig. | 28 | 56 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_4881 | | RNA methyltransferase TrmH, group 2 | insig. | 27 | 57 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_4881 | | RNA methyltransferase TrmH, group 2 | insig. | 27 | 57 |
| | Erwinia amylovora T8 | OLJFJH_05925 | | tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine(34)-2'-O)-methyltransferase TrmL | insig. | 32 | 57 |
| | Rhizobium sp. OAE497 | ABIE40_RS13160 | | tRNA (cytidine(34)-2'-O)-methyltransferase | insig. | 30 | 56 |
| | Agrobacterium fabrum C58 | Atu2244 | | tRNA/rRNA methyltransferase | insig. | 30 | 57 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_349 | | tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) | insig. | 28 | 57 |
| | Pseudomonas simiae WCS417 | PS417_01625 | | rRNA methylase | no data | 28 | 56 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS11465 | trmL;go_function=tRNA | tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine(34)-2'-O)-methyltransferase TrmL | insig. | 30 | 57 |
| | Phocaeicola dorei CL03T12C01 | ABI39_RS18650 | | RNA methyltransferase | insig. | 27 | 58 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS50635 | trmL;go_function=tRNA | tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine(34)-2'-O)-methyltransferase TrmL | insig. | 30 | 57 |
| | Shewanella amazonensis SB2B | Sama_2526 | | putative methyltransferase (RefSeq) | insig. | 25 | 74 |
| | Lysobacter sp. OAE881 | ABIE51_RS16975 | | TrmH family RNA methyltransferase | insig. | 27 | 68 |
| | Pseudomonas sp. SVBP6 | COO64_RS13315 | | tRNA (cytidine(34)-2'-O)-methyltransferase | insig. | 27 | 57 |
| | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_2186 | | rRNA methylase, putative, group 3 | sig. | 26 | 57 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_1613 | | tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) | insig. | 28 | 56 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_12135 | | rRNA methylase | sig. | 28 | 56 |
| | Klebsiella michiganensis M5al | BWI76_RS21385 | | tRNA/rRNA methyltransferase | insig. | 24 | 74 |
| | Mycobacterium tuberculosis H37Rv | Rv0881 | | Possible rRNA methyltransferase (rRNA methylase) | insig. | 28 | 72 |
| | Pseudomonas stutzeri RCH2 | Psest_3934 | | rRNA methylase, putative, group 2 | insig. | 27 | 57 |
| | Erwinia amylovora T8 | OLJFJH_09795 | | tRNA/rRNA methyltransferase | insig. | 26 | 74 |
| | Azospirillum brasilense Sp245 | AZOBR_RS31345 | | RNA methyltransferase | insig. | 27 | 97 |
| | Escherichia fergusonii Becca | EFB2_00204 | | tRNA (cytidine(34)-2'-O)-methyltransferase | insig. | 32 | 57 |