| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
|---|
| o | Dickeya dadantii 3937 | DDA3937_RS13775 | | helix-turn-helix transcriptional regulator | insig. | 100 | 100 |
| | Dickeya dianthicola ME23 | DZA65_RS07685 | | helix-turn-helix transcriptional regulator | insig. | 100 | 100 |
| o | Paraburkholderia sabiae LMG 24235 | QEN71_RS34765 | | helix-turn-helix transcriptional regulator | insig. | 56 | 100 |
| o | Pseudomonas simiae WCS417 | PS417_24885 | | transcriptional regulator | strong | 56 | 100 |
| | Ralstonia solanacearum GMI1000 | RS_RS11670 | | XRE family transcriptional regulator | insig. | 46 | 80 |
| o | Ralstonia solanacearum PSI07 | RPSI07_RS22035 | | XRE family transcriptional regulator | insig. | 45 | 81 |
| o | Rhodanobacter denitrificans FW104-10B01 | LRK54_RS09060 | | helix-turn-helix transcriptional regulator | insig. | 46 | 80 |
| | Variovorax sp. OAS795 | ABID97_RS23605 | | helix-turn-helix transcriptional regulator | insig. | 45 | 81 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS25810 | | DNA-binding protein | insig. | 49 | 80 |
| | Pseudomonas stutzeri RCH2 | Psest_3408 | | Predicted transcriptional regulators | sig. | 50 | 74 |
| | Desulfovibrio vulgaris Miyazaki F | DvMF_0794 | | transcriptional regulator, XRE family (RefSeq) | strong | 55 | 68 |
| o | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS23980 | | XRE family transcriptional regulator | insig. | 45 | 95 |
| | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS15920 | | XRE family transcriptional regulator | no data | 48 | 67 |
| | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS23520 | | XRE family transcriptional regulator | no data | 48 | 67 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_12720 | | transcriptional regulator | sig. | 45 | 79 |
| | Castellaniella sp019104865 MT123 | ABCV34_RS15905 | | helix-turn-helix transcriptional regulator | no data | 45 | 85 |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF3490 | | Predicted transcriptional regulators | no data | 47 | 77 |
| | Alteromonas macleodii MIT1002 | MIT1002_02112 | | anaerobic benzoate catabolism transcriptional regulator | insig. | 47 | 74 |
| | Shewanella oneidensis MR-1 | SO3867 | | transcriptional regulator, Cro/CI family (NCBI ptt file) | insig. | 47 | 74 |
| o | Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.1294.1 | | hypothetical protein | insig. | 40 | 99 |
| | Pseudomonas sp. S08-1 | OH686_23020 | | Transcriptional regulator, Xre family | insig. | 42 | 77 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS00085 | | transcriptional regulator | insig. | 39 | 83 |
| | Dechlorosoma suillum PS | Dsui_2833 | | putative transcriptional regulator | insig. | 44 | 68 |
| o | Dickeya dianthicola 67-19 | HGI48_RS08545 | | helix-turn-helix transcriptional regulator | insig. | 44 | 86 |
| | Dickeya dadantii 3937 | DDA3937_RS04070 | | helix-turn-helix transcriptional regulator | strong | 47 | 74 |
| | Dickeya dadantii 3937 | DDA3937_RS08405 | | helix-turn-helix transcriptional regulator | no data | 47 | 74 |
| | Phaeobacter inhibens DSM 17395 | PGA1_c28440 | | putative transcriptional regulator | insig. | 35 | 99 |
| | Shewanella sp. ANA-3 | Shewana3_3803 | | XRE family transcriptional regulator (RefSeq) | cofit | 39 | 79 |
| | Dickeya dadantii 3937 | DDA3937_RS21910 | | helix-turn-helix transcriptional regulator | insig. | 45 | 77 |
| | Dickeya dianthicola 67-19 | HGI48_RS08550 | | helix-turn-helix transcriptional regulator | insig. | 45 | 77 |
| | Shewanella oneidensis MR-1 | SOA0002 | | type II restriction-modification system activator, putative (NCBI ptt file) | strong | 45 | 74 |
| | Sinorhizobium meliloti 1021 | SMc02184 | | transcriptional regulator | insig. | 44 | 77 |
| | Shewanella loihica PV-4 | Shew_3490 | | XRE family transcriptional regulator (RefSeq) | insig. | 41 | 78 |
| | Brevundimonas sp. GW460-12-10-14-LB2 | A4249_RS16325 | | helix-turn-helix transcriptional regulator | insig. | 39 | 75 |
| | Pedobacter sp. GW460-11-11-14-LB5 | CA265_RS20215 | | transcriptional regulator | insig. | 42 | 74 |
| | Pseudomonas sp. DMC3 | GFF3394 | | hypothetical protein | cofit | 44 | 75 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS09355 | | XRE family transcriptional regulator | sig. | 40 | 83 |
| | Xanthobacter sp. DMC5 | GFF1030 | | HTH-type transcriptional regulator SutR | insig. | 38 | 78 |
| | Serratia liquefaciens MT49 | IAI46_09015 | | helix-turn-helix transcriptional regulator | no data | 37 | 94 |
| | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS14665 | | XRE family transcriptional regulator | strong | 36 | 85 |
| | Ralstonia solanacearum UW163 | UW163_RS12135 | | XRE family transcriptional regulator | insig. | 36 | 85 |
| | Phocaeicola vulgatus CL09T03C04 | HMPREF1058_RS19065 | | helix-turn-helix domain-containing protein | no data | 40 | 65 |
| | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS07920 | | XRE family transcriptional regulator | cofit | 39 | 83 |
| | Ralstonia solanacearum UW163 | UW163_RS05705 | | XRE family transcriptional regulator | sig. | 39 | 83 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_3250 | | Helix-turn-helix motif protein | insig. | 39 | 79 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_3250 | | Helix-turn-helix motif protein | insig. | 39 | 79 |
| | Agrobacterium fabrum C58 | Atu0245 | | transcriptional regulator | insig. | 44 | 75 |
| | Sphingobium sp. HT1-2 | GFF1865 | | Transcriptional regulator, Xre family | cofit | 44 | 75 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_03682 | | HTH-type transcriptional regulator SutR | cofit | 38 | 89 |
| | Escherichia coli ECRC100 | OKFHMN_11715 | hipB | Transcriptional regulator, contains XRE-family HTH domain | cofit | 43 | 65 |
| | Escherichia coli ECRC101 | MCAODC_02230 | hipB | Transcriptional regulator, contains XRE-family HTH domain | insig. | 43 | 65 |
| | Escherichia coli ECRC102 | NIAGMN_09565 | hipB | Transcriptional regulator, contains XRE-family HTH domain | insig. | 43 | 65 |
| | Escherichia coli ECRC99 | KEDOAH_16430 | hipB | Transcriptional regulator, contains XRE-family HTH domain | no data | 43 | 65 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS35135 | | transcriptional regulator | insig. | 38 | 78 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS25065 | | XRE family transcriptional regulator | insig. | 38 | 85 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_21480 | | Cro/Cl family transcriptional regulator | strong | 37 | 88 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_5820 | | Transcriptional regulator, Cro/CI family | strong | 36 | 86 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_00255 | | DNA-binding protein | insig. | 38 | 74 |
| | Rhodospirillum rubrum S1H | Rru_A2614 | | Transcriptional Regulator, XRE family with Cupin sensor domain (NCBI) | insig. | 35 | 84 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_541 | | Transcriptional regulator, Cro/CI family | insig. | 40 | 84 |
| | Pseudomonas sp. RS175 | PFR28_02400 | | hypothetical protein | sig. | 38 | 84 |
| | Ralstonia sp. UNC404CL21Col | ABZR87_RS07155 | | helix-turn-helix transcriptional regulator | insig. | 38 | 75 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS18795 | | XRE family transcriptional regulator | insig. | 38 | 75 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS35975 | | Xre family transcriptional regulator | insig. | 37 | 85 |
| | Pseudomonas orientalis W4I3 | QF045_RS20160 | | helix-turn-helix transcriptional regulator | insig. | 36 | 75 |
| | Escherichia coli Nissle 1917 | ECOLIN_RS26340 | | helix-turn-helix transcriptional regulator | cofit | 41 | 75 |
| | Variovorax sp. OAS795 | ABID97_RS07740 | | helix-turn-helix transcriptional regulator | insig. | 40 | 72 |
| | Ralstonia solanacearum GMI1000 | RS_RS15820 | | XRE family transcriptional regulator | cofit | 39 | 83 |
| | Ralstonia solanacearum GMI1000 | RS_RS05450 | | XRE family transcriptional regulator | strong | 38 | 75 |
| | Pseudomonas orientalis W4I3 | QF045_RS18555 | | XRE family transcriptional regulator | cofit | 36 | 89 |
| | Pseudomonas simiae WCS417 | PS417_16820 | | Cro/Cl family transcriptional regulator | no data | 36 | 89 |
| | Vibrio cholerae E7946 ATCC 55056 | CSW01_09830 | | XRE family transcriptional regulator | insig. | 36 | 75 |
| | Bosea sp. OAE506 | ABIE41_RS13175 | | XRE family transcriptional regulator | insig. | 34 | 86 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_23290 | | Cro/Cl family transcriptional regulator | sig. | 37 | 86 |
| | Rhodopseudomonas palustris CGA009 | TX73_022780 | | short-chain fatty acyl-CoA regulator family protein | no data | 40 | 78 |
| | Pantoea agglomerans CFBP13505 P0401 | PagCFBP13516_RS21110 | | helix-turn-helix domain-containing protein | cofit | 31 | 80 |
| | Methanococcus maripaludis S2 | MMP_RS01155 | | XRE family transcriptional regulator | strong | 30 | 85 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS18830 | | helix-turn-helix domain-containing protein | insig. | 36 | 89 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS18830 | | helix-turn-helix domain-containing protein | strong | 36 | 89 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS09495 | | helix-turn-helix transcriptional regulator | insig. | 36 | 75 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS09495 | | helix-turn-helix transcriptional regulator | insig. | 36 | 75 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_919 | | FIG00954373: hypothetical protein | insig. | 36 | 75 |
| | Rhizobium sp. OAE497 | ABIE40_RS01060 | | XRE family transcriptional regulator | insig. | 39 | 75 |
| | Ralstonia solanacearum UW163 | UW163_RS16180 | | XRE family transcriptional regulator | no data | 39 | 75 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS29790 | | hypothetical protein | insig. | 38 | 75 |
| | Cellulophaga baltica 18 | M666_RS06305 | | helix-turn-helix transcriptional regulator | insig. | 36 | 85 |
| | Ralstonia sp. UNC404CL21Col | ABZR87_RS18270 | | XRE family transcriptional regulator | insig. | 34 | 73 |
| | Caulobacter crescentus NA1000 | CCNA_02789 | | Xre-family transcriptional regulator | insig. | 42 | 68 |
| | Caulobacter crescentus NA1000 Δfur | CCNA_02789 | | Xre-family transcriptional regulator | cofit | 42 | 68 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS05700 | | hypothetical protein | insig. | 42 | 74 |
| | Pantoea sp. MT58 | IAI47_20745 | | helix-turn-helix transcriptional regulator | sig. | 32 | 80 |
| | Variovorax sp. SCN45 | GFF1264 | | Transcriptional regulator, Xre family | insig. | 44 | 64 |
| | Methanococcus maripaludis JJ | MMJJ_RS04940 | | XRE family transcriptional regulator | insig. | 39 | 63 |
| | Methanococcus maripaludis S2 | MMP_RS00545 | | XRE family transcriptional regulator | insig. | 39 | 63 |
| | Acidovorax sp. GW101-3H11 | Ac3H11_2797 | | helix-turn-helix domain protein | insig. | 44 | 51 |
| | Azospirillum sp. SherDot2 | MPMX19_06559 | | hypothetical protein | no data | 40 | 74 |
| | Escherichia coli BL21 | ECD_01392 | | putative DNA-binding transcriptional regulator | no data | 40 | 65 |
| | Escherichia fergusonii Becca | EFB2_02548 | | HTH-type transcriptional regulator SutR | insig. | 40 | 65 |
| | Escherichia coli ECOR27 | NOLOHH_19280 | sutR | DNA-binding transcriptional regulator SutR | insig. | 40 | 65 |
| | Escherichia coli ECOR38 | HEPCGN_26215 | sutR | DNA-binding transcriptional regulator SutR | insig. | 40 | 65 |
| | Escherichia coli ECRC100 | OKFHMN_01605 | sutR | DNA-binding transcriptional regulator SutR | insig. | 40 | 65 |
| | Escherichia coli ECRC101 | MCAODC_16335 | sutR | DNA-binding transcriptional regulator SutR | insig. | 40 | 65 |
| | Escherichia coli ECRC102 | NIAGMN_25740 | sutR | DNA-binding transcriptional regulator SutR | no data | 40 | 65 |
| | Escherichia coli ECRC62 | BNILDI_17730 | sutR | DNA-binding transcriptional regulator SutR | insig. | 40 | 65 |
| | Escherichia coli ECRC98 | JDDGAC_04095 | sutR | DNA-binding transcriptional regulator SutR | insig. | 40 | 65 |
| | Escherichia coli ECRC99 | KEDOAH_26835 | sutR | DNA-binding transcriptional regulator SutR | no data | 40 | 65 |
| | Escherichia coli HS(pFamp)R (ATCC 700891) | OHPLBJKB_02281 | | HTH-type transcriptional regulator SutR | insig. | 40 | 65 |
| | Escherichia coli Nissle 1917 | ECOLIN_RS08275 | | DNA-binding transcriptional regulator SutR | no data | 40 | 65 |
| | Escherichia coli BW25113 | b1434 | ydcN | predicted DNA-binding transcriptional regulator (NCBI) | insig. | 40 | 65 |
| | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS08105 | | XRE family transcriptional regulator | insig. | 38 | 74 |
| | Brevundimonas sp. GW460-12-10-14-LB2 | A4249_RS05750 | | helix-turn-helix transcriptional regulator | insig. | 38 | 72 |
| | Ralstonia solanacearum UW163 | UW163_RS05495 | | XRE family transcriptional regulator | insig. | 38 | 75 |
| | Rhizobium sp. OAE497 | ABIE40_RS24480 | | XRE family transcriptional regulator | cofit | 35 | 80 |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF5451 | | hypothetical protein | insig. | 35 | 78 |
| | Acidovorax sp. GW101-3H11 | Ac3H11_4306 | | Predicted transcriptional regulators | insig. | 42 | 64 |
| | Azospirillum brasilense Sp245 | AZOBR_RS27035 | | hypothetical protein | no data | 39 | 74 |
| | Caulobacter crescentus NA1000 | CCNA_01840 | | MerR-family transcriptional regulator | strong | 37 | 77 |
| | Caulobacter crescentus NA1000 Δfur | CCNA_01840 | | MerR-family transcriptional regulator | cofit | 37 | 77 |
| | Rhizobium sp. OAE497 | ABIE40_RS03260 | | short-chain fatty acyl-CoA regulator family protein | strong | 36 | 72 |
| | Rhodopseudomonas palustris CGA009 | TX73_024880 | | helix-turn-helix transcriptional regulator | cofit | 35 | 77 |
| | Rhodospirillum rubrum S1H | Rru_A3242 | | Transcriptional Regulator, XRE family (NCBI) | insig. | 35 | 81 |
| | Azospirillum sp. SherDot2 | MPMX19_00778 | | hypothetical protein | insig. | 33 | 74 |
| | Dinoroseobacter shibae DFL-12 | Dshi_1555 | | transcriptional regulator, XRE family (RefSeq) | sig. | 33 | 99 |
| | Mucilaginibacter yixingensis YX-36 DSM 26809 | ABZR88_RS08150 | | helix-turn-helix domain-containing protein | insig. | 39 | 77 |
| | Alteromonas macleodii MIT1002 | MIT1002_00748 | | DNA-binding transcriptional repressor PuuR | insig. | 36 | 73 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS16530 | | XRE family transcriptional regulator | insig. | 33 | 81 |
| | Variovorax sp. OAS795 | ABID97_RS13245 | | XRE family transcriptional regulator | insig. | 41 | 60 |
| | Mucilaginibacter yixingensis YX-36 DSM 26809 | ABZR88_RS21935 | | helix-turn-helix domain-containing protein | sig. | 38 | 74 |
| | Pseudomonas sp. SVBP6 | COO64_RS19420 | | helix-turn-helix domain-containing protein | insig. | 38 | 84 |
| | Pseudomonas protegens RBAN4 | FABNJH_13660 | | DNA-binding domain/cupin domain protein | insig. | 37 | 84 |
| | Caulobacter crescentus NA1000 | CCNA_03267 | | HipB-related transcriptional regulatory protein | cofit | 35 | 74 |
| | Caulobacter crescentus NA1000 Δfur | CCNA_03267 | | HipB-related transcriptional regulatory protein | cofit | 35 | 74 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS33920 | | XRE family transcriptional regulator | strong | 33 | 75 |
| | Sinorhizobium meliloti 1021 | SM_b21117 | | transcriptional regulator | insig. | 37 | 77 |
| | Caulobacter crescentus NA1000 | CCNA_00049 | | HTH transcriptional regulator | sig. | 35 | 80 |
| | Caulobacter crescentus NA1000 Δfur | CCNA_00049 | | HTH transcriptional regulator | cofit | 35 | 80 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_06745 | | DNA-binding protein | sig. | 34 | 65 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_3201 | | Transcriptional regulator, MerR family | strong | 34 | 65 |
| | Pseudomonas sp. SVBP6 | COO64_RS21690 | | helix-turn-helix domain-containing protein | insig. | 40 | 62 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS11685 | | transcription factor | no data | 40 | 68 |
| | Variovorax sp. OAS795 | ABID97_RS06760 | | XRE family transcriptional regulator | insig. | 40 | 74 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS16640 | | XRE family transcriptional regulator | insig. | 38 | 78 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS34660 | | DNA-binding protein | sig. | 34 | 84 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_03889 | | HTH-type transcriptional regulator SutR | insig. | 33 | 70 |
| | Pseudomonas putida KT2440 | PP_2232 | | XRE family transcriptional regulator | sig. | 41 | 75 |
| | Shewanella sp. ANA-3 | Shewana3_0319 | | XRE family transcriptional regulator (RefSeq) | strong | 38 | 69 |
| | Klebsiella michiganensis M5al | BWI76_RS13370 | | hypothetical protein | insig. | 37 | 64 |
| | Phaeobacter inhibens DSM 17395 | PGA1_c29470 | | puttative helix-turn-helix protein | insig. | 35 | 74 |
| | Ralstonia solanacearum UW163 | UW163_RS11585 | | XRE family transcriptional regulator | insig. | 35 | 78 |
| | Rhodospirillum rubrum S1H | Rru_A0278 | | Transcriptional Regulator, XRE family (NCBI) | sig. | 33 | 91 |
| | Bacteroides stercoris CC31F | HMPREF1181_RS12920 | | helix-turn-helix transcriptional regulator | cofit | 36 | 65 |
| | Sinorhizobium meliloti 1021 | SMc00769 | | hypothetical protein | strong | 38 | 72 |
| | Pectobacterium carotovorum WPP14 | HER17_RS16750 | | helix-turn-helix domain-containing protein | insig. | 40 | 62 |