Homologs of DZA65_RS01640 from Dickeya dianthicola ME23

TIGR01212 family radical SAM protein
SEED: COG1242: Predicted Fe-S oxidoreductase

97 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Dickeya dianthicola ME23 DZA65_RS01640 TIGR01212 family radical SAM protein insig. 100 100
o Dickeya dianthicola 67-19 HGI48_RS01565 TIGR01212 family radical SAM protein insig. 100 100
o Dickeya dadantii 3937 DDA3937_RS01670 TIGR01212 family radical SAM protein insig. 96 100
o Pectobacterium carotovorum WPP14 HER17_RS19905 TIGR01212 family radical SAM protein cofit 82 100
o Escherichia coli Nissle 1917 ECOLIN_RS18470 TIGR01212 family radical SAM protein insig. 79 98
o Escherichia coli BL21 ECD_03076 putative Fe-S oxidoreductase, Radical SAM superfamily protein insig. 78 98
o Escherichia coli ECRC100 OKFHMN_17890 yhcC TIGR01212 family radical SAM protein cofit 78 98
o Escherichia coli ECRC101 MCAODC_08410 yhcC TIGR01212 family radical SAM protein insig. 78 98
o Escherichia coli ECRC102 NIAGMN_15650 yhcC TIGR01212 family radical SAM protein insig. 78 98
o Escherichia coli ECRC62 BNILDI_01845 yhcC TIGR01212 family radical SAM protein insig. 78 98
o Escherichia coli ECRC98 JDDGAC_21515 yhcC TIGR01212 family radical SAM protein insig. 78 98
o Escherichia coli ECRC99 KEDOAH_10260 yhcC TIGR01212 family radical SAM protein no data 78 98
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00489 hypothetical protein insig. 78 98
o Escherichia coli BW25113 b3211 yhcC predicted Fe-S oxidoreductase (NCBI) insig. 78 98
o Escherichia fergusonii Becca EFB2_00612 hypothetical protein insig. 78 98
o Escherichia coli ECOR38 HEPCGN_16765 yhcC TIGR01212 family radical SAM protein insig. 78 98
o Serratia liquefaciens MT49 IAI46_22340 TIGR01212 family radical SAM protein insig. 78 99
o Escherichia coli ECOR27 NOLOHH_09690 yhcC TIGR01212 family radical SAM protein insig. 78 98
o Klebsiella michiganensis M5al BWI76_RS25305 TIGR01212 family radical SAM protein insig. 78 98
o Enterobacter sp. TBS_079 MPMX20_04125 hypothetical protein insig. 77 98
o Enterobacter asburiae PDN3 EX28DRAFT_3274 radical SAM protein, TIGR01212 family insig. 76 98
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2955 COG1242: Predicted Fe-S oxidoreductase insig. 76 98
o Klebsiella pneumoniae MKP103 KDGMDA_06140 TIGR01212 family radical SAM protein insig. 79 94
o Vibrio cholerae E7946 ATCC 55056 CSW01_12015 TIGR01212 family radical SAM protein insig. 72 99
o Shewanella sp. ANA-3 Shewana3_3048 putative radical SAM protein (RefSeq) insig. 57 98
o Shewanella oneidensis MR-1 SO1326 conserved hypothetical protein (NCBI ptt file) insig. 57 98
o Shewanella loihica PV-4 Shew_1033 putative radical SAM protein (RefSeq) insig. 56 96
o Shewanella amazonensis SB2B Sama_0858 hypothetical protein (RefSeq) insig. 54 99
o Fusobacterium nucleatum SB010 HUW76_06060 TIGR01212 family radical SAM protein cofit 33 91
o Desulfovibrio vulgaris Hildenborough JW710 DVU0790 radical SAM protein, TIGR01212 family (TIGR) insig. 40 93
o Parabacteroides merdae CL09T00C40 HMPREF1078_RS16795 TIGR01212 family radical SAM protein insig. 37 98
  Desulfovibrio vulgaris Miyazaki F DvMF_2819 conserved hypothetical radical SAM protein (RefSeq) insig. 38 93
o Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS14495 TIGR01212 family radical SAM protein sig. 37 89
o Phocaeicola dorei CL03T12C01 ABI39_RS10115 TIGR01212 family radical SAM protein insig. 37 89
o Bacteroides stercoris CC31F HMPREF1181_RS08775 TIGR01212 family radical SAM protein insig. 37 89
o Bacteroides ovatus ATCC 8483 BACOVA_04934 radical SAM protein, TIGR01212 family insig. 35 95
o Pedobacter sp. GW460-11-11-14-LB5 CA265_RS14980 TIGR01212 family radical SAM protein insig. 36 94
o Methanococcus maripaludis JJ MMJJ_RS06675 TIGR01212 family radical SAM protein strong 30 95
o Bacteroides thetaiotaomicron VPI-5482 BT4125 conserved hypothetical protein (NCBI ptt file) sig. 35 95
o Methanococcus maripaludis S2 MMP_RS07685 TIGR01212 family radical SAM protein strong 31 95
o Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS04765 TIGR01212 family radical SAM protein insig. 35 97
  Methanococcus maripaludis JJ MMJJ_RS06255 tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 strong 32 43
  Methanococcus maripaludis S2 MMP_RS08110 tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 no data 31 43
  Fusobacterium nucleatum SB010 HUW76_02255 radical SAM protein cofit 21 69
  Methanococcus maripaludis S2 MMP_RS06965 TIGR04014 family B12-binding domain/radical SAM domain-containing protein strong 24 54
  Rahnella sp. WP5 EX31_RS00615 heme anaerobic degradation radical SAM methyltransferase ChuW/HutW insig. 26 66
  Fusobacterium nucleatum SB010 HUW76_01555 coproporphyrinogen III oxidase cofit 24 60
  Rhodospirillum rubrum S1H Rru_A3770 tRNA-i(6)A37 modification enzyme MiaB (NCBI) strong 40 21
  Methanococcus maripaludis JJ MMJJ_RS07390 TIGR04014 family B12-binding domain/radical SAM domain-containing protein sig. 25 56
  Bacteroides stercoris CC31F HMPREF1181_RS06440 radical SAM family heme chaperone HemW cofit 30 35
  Azospirillum brasilense Sp245 AZOBR_RS01475 (dimethylallyl)adenosine tRNA methylthiotransferase insig. 39 22
  Rhodanobacter denitrificans MT42 LRK55_RS13465 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB cofit 34 22
  Rhodopseudomonas palustris CGA009 TX73_002325 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB insig. 32 36
  Rhodanobacter sp. FW510-T8 OKGIIK_02990 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB insig. 28 39
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS13750 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB sig. 34 22
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS14850 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB insig. 34 22
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS09895 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB sig. 34 22
  Fusobacterium nucleatum SB010 HUW76_07655 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB strong 27 34
  Rhodospirillum rubrum S1H Rru_A3639 Putative oxygen-independent coproporphyrinogen III oxidase (NCBI) insig. 25 72
  Kangiella aquimarina DSM 16071 B158DRAFT_2271 MiaB-like tRNA modifying enzyme cofit 32 30
  Sinorhizobium meliloti 1021 SMc01115 (dimethylallyl)adenosine tRNA methylthiotransferase insig. 40 21
  Azospirillum sp. SherDot2 MPMX19_02511 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase insig. 38 22
  Pantoea sp. MT58 IAI47_13945 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB insig. 27 53
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS03360 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB cofit 26 53
  Bosea sp. OAE506 ABIE41_RS04495 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB insig. 39 26
  Erwinia tracheiphila SCR3 LU632_RS18435 hutW heme anaerobic degradation radical SAM methyltransferase ChuW/HutW insig. 37 24
  Marinobacter adhaerens HP15 HP15_1760 oxygen-independent coproporphyrinogen III oxidase, Fe-S oxidoreductase insig. 26 50
  Lysobacter sp. OAE881 ABIE51_RS15455 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB insig. 25 53
  Desulfovibrio vulgaris Hildenborough JW710 DVU0394 radical SAM domain protein (TIGR) no data 26 65
  Shewanella oneidensis MR-1 SO1181 miaB tRNA-i(6)A37 modification enzyme MiaB (NCBI ptt file) strong 33 27
  Magnetospirillum magneticum AMB-1 AMB_RS22585 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase insig. 35 22
  Marinobacter adhaerens HP15 HP15_2466 tRNA-i(6)A37 thiotransferase enzyme MiaB strong 31 27
  Mycobacterium tuberculosis H37Rv Rv2733c Conserved hypothetical alanine, arginine-rich protein sig. 26 53
  Kangiella aquimarina DSM 16071 B158DRAFT_0099 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB sig. 33 22
  Pseudomonas syringae pv. syringae B728a Psyr_4345 tRNA-i(6)A37 thiotransferase enzyme MiaB sig. 33 22
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4345 tRNA-i(6)A37 thiotransferase enzyme MiaB insig. 33 22
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.2224.1 tRNA-i(6)A37 methylthiotransferase strong 26 53
  Bifidobacterium breve UCC2003 BBR_RS15235 coproporphyrinogen III oxidase insig. 25 50
  Serratia liquefaciens MT49 IAI46_24970 oxygen-independent coproporphyrinogen III oxidase cofit 29 41
  Rhodopseudomonas palustris CGA009 TX73_010940 heme anaerobic degradation radical SAM methyltransferase ChuW/HutW insig. 39 18
  Pseudomonas sp. SVBP6 COO64_RS15510 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB insig. 33 22
  Pseudomonas stutzeri RCH2 Psest_0532 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB sig. 32 22
  Dinoroseobacter shibae DFL-12 Dshi_1019 RNA modification enzyme, MiaB family (RefSeq) insig. 35 22
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF613 tRNA-i(6)A37 methylthiotransferase cofit 32 22
  Pseudomonas sp. DMC3 GFF3900 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase insig. 33 22
  Pseudomonas simiae WCS417 PS417_24625 (dimethylallyl)adenosine tRNA methylthiotransferase sig. 33 22
  Pseudomonas fluorescens GW456-L13 PfGW456L13_1380 tRNA-i(6)A37 methylthiotransferase insig. 33 22
  Pseudomonas fluorescens SBW25 PFLU_RS26555 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB insig. 33 22
  Pseudomonas fluorescens SBW25-INTG PFLU_RS26555 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB sig. 33 22
  Pseudomonas lactucae CFBP13502 GEMAOFIL_05078 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase insig. 33 22
  Pseudomonas orientalis W4I3 QF045_RS26910 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB insig. 33 22
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_2712 tRNA-i(6)A37 methylthiotransferase sig. 33 22
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_5018 tRNA-i(6)A37 methylthiotransferase sig. 33 22
  Pseudomonas sp. RS175 PFR28_03848 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase insig. 33 22
  Pseudomonas fluorescens FW300-N2E3 AO353_06375 (dimethylallyl)adenosine tRNA methylthiotransferase sig. 33 22
  Pseudomonas fluorescens FW300-N2C3 AO356_15410 (dimethylallyl)adenosine tRNA methylthiotransferase insig. 33 22
  Desulfovibrio vulgaris Miyazaki F DvMF_1562 Radical SAM domain protein (RefSeq) no data 28 39