Homologs of CSW01_00255 from Vibrio cholerae E7946 ATCC 55056

DNA topoisomerase
SEED: Similar to C-terminal Zn-finger domain of DNA topoisomerase I
KEGG: putative DNA topoisomerase

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Vibrio cholerae E7946 ATCC 55056 CSW01_00255 DNA topoisomerase insig. 100 100
o Enterobacter sp. TBS_079 MPMX20_04191 DNA topoisomerase 1 sig. 57 92
o Rahnella sp. WP5 EX31_RS15960 hypothetical protein insig. 57 89
o Enterobacter asburiae PDN3 EX28DRAFT_0044 Zn-finger domain associated with topoisomerase type I cofit 56 92
o Shewanella sp. ANA-3 Shewana3_0039 DNA topoisomerase type IA Zn finger domain-containing protein (RefSeq) insig. 53 95
o Klebsiella michiganensis M5al BWI76_RS25655 DNA topoisomerase type IA zn finger domain-containing protein sig. 57 87
o Shewanella oneidensis MR-1 SO0036 topoisomerase DNA-binding C4 zinc finger domain protein (NCBI ptt file) sig. 52 97
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2395 Similar to C-terminal Zn-finger domain of DNA topoisomerase I insig. 57 87
o Escherichia coli ECOR27 NOLOHH_09345 yrdD Uncharacterized protein YrdD cofit 56 87
o Escherichia fergusonii Becca EFB2_00540 DNA topoisomerase 1 cofit 56 87
o Escherichia coli ECOR38 HEPCGN_16375 yrdD Uncharacterized protein YrdD cofit 56 87
o Escherichia coli ECRC62 BNILDI_02175 yrdD Uncharacterized protein YrdD cofit 56 87
o Escherichia coli Nissle 1917 ECOLIN_RS18850 type I DNA topoisomerase insig. 56 87
o Escherichia coli BL21 ECD_03134 ssDNA-binding protein, function unknown strong 55 87
o Escherichia coli ECRC100 OKFHMN_17555 yrdD Uncharacterized protein YrdD cofit 55 87
o Escherichia coli ECRC101 MCAODC_08075 yrdD Uncharacterized protein YrdD insig. 55 87
o Escherichia coli ECRC102 NIAGMN_15315 yrdD Uncharacterized protein YrdD insig. 55 87
o Escherichia coli ECRC98 JDDGAC_21175 yrdD Uncharacterized protein YrdD cofit 55 87
o Escherichia coli ECRC99 KEDOAH_10595 yrdD Uncharacterized protein YrdD no data 55 87
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00420 DNA topoisomerase 1 insig. 55 87
o Escherichia coli BW25113 b3283 yrdD predicted DNA topoisomerase (NCBI) sig. 55 87
o Pectobacterium carotovorum WPP14 HER17_RS02240 topoisomerase DNA-binding C4 zinc finger domain-containing protein cofit 54 93
o Serratia liquefaciens MT49 IAI46_23250 topoisomerase DNA-binding C4 zinc finger domain-containing protein insig. 57 91
o Erwinia amylovora T8 OLJFJH_03695 DNA topoisomerase I ssDNA-binding Zn-finger and Zn-ribbon domains insig. 54 92
o Pantoea sp. MT58 IAI47_02305 topoisomerase DNA-binding C4 zinc finger domain-containing protein sig. 53 91
o Shewanella amazonensis SB2B Sama_0048 topoisomerase DNA-binding C4 zinc finger domain-containing protein (RefSeq) insig. 50 94
o Shewanella loihica PV-4 Shew_3731 DNA topoisomerase type IA Zn finger domain-containing protein (RefSeq) insig. 50 95
o Erwinia tracheiphila SCR3 LU632_RS22455 topoisomerase DNA-binding C4 zinc finger domain-containing protein insig. 54 85
o Dickeya dadantii 3937 DDA3937_RS22495 topoisomerase DNA-binding C4 zinc finger domain-containing protein insig. 55 85
o Alteromonas macleodii MIT1002 MIT1002_00024 DNA topoisomerase 1 cofit 48 95
o Dickeya dianthicola ME23 DZA65_RS20325 hypothetical protein insig. 54 88
o Dickeya dianthicola 67-19 HGI48_RS19200 topoisomerase DNA-binding C4 zinc finger domain-containing protein insig. 53 88
  Desulfovibrio vulgaris Hildenborough JW710 DVU3389 topA DNA topoisomerase I (TIGR) no data 38 87
  Desulfovibrio vulgaris Miyazaki F DvMF_2069 DNA topoisomerase I (RefSeq) no data 34 87
  Methanococcus maripaludis S2 MMP_RS04955 DNA topoisomerase I strong 43 47
  Methanococcus maripaludis JJ MMJJ_RS00180 DNA topoisomerase I strong 43 47
  Methanococcus maripaludis S2 MMP_RS04955 DNA topoisomerase I strong 31 65
  Methanococcus maripaludis JJ MMJJ_RS00180 DNA topoisomerase I strong 31 65
o Klebsiella michiganensis M5al BWI76_RS25655 DNA topoisomerase type IA zn finger domain-containing protein sig. 36 61
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2395 Similar to C-terminal Zn-finger domain of DNA topoisomerase I insig. 38 61
  Marinobacter adhaerens HP15 HP15_1186 DNA topoisomerase III insig. 43 40
o Escherichia fergusonii Becca EFB2_00540 DNA topoisomerase 1 cofit 39 61
o Escherichia coli ECOR38 HEPCGN_16375 yrdD Uncharacterized protein YrdD cofit 39 61
o Escherichia coli ECRC62 BNILDI_02175 yrdD Uncharacterized protein YrdD cofit 39 61
o Escherichia coli Nissle 1917 ECOLIN_RS18850 type I DNA topoisomerase insig. 39 61
o Escherichia coli BL21 ECD_03134 ssDNA-binding protein, function unknown strong 39 61
o Escherichia coli ECRC100 OKFHMN_17555 yrdD Uncharacterized protein YrdD cofit 39 61
o Escherichia coli ECRC101 MCAODC_08075 yrdD Uncharacterized protein YrdD insig. 39 61
o Escherichia coli ECRC102 NIAGMN_15315 yrdD Uncharacterized protein YrdD insig. 39 61
o Escherichia coli ECRC98 JDDGAC_21175 yrdD Uncharacterized protein YrdD cofit 39 61
o Escherichia coli ECRC99 KEDOAH_10595 yrdD Uncharacterized protein YrdD no data 39 61
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00420 DNA topoisomerase 1 insig. 39 61
o Escherichia coli BW25113 b3283 yrdD predicted DNA topoisomerase (NCBI) sig. 39 61
o Escherichia coli ECOR27 NOLOHH_09345 yrdD Uncharacterized protein YrdD cofit 38 61
  Rhodopseudomonas palustris CGA009 TX73_016155 type I DNA topoisomerase strong 36 46
  Xanthobacter sp. DMC5 GFF934 DNA topoisomerase 1 no data 33 46
  Dechlorosoma suillum PS Dsui_2608 topoisomerase IA cofit 32 52
  Rhodospirillum rubrum S1H Rru_A3202 DNA topoisomerase (NCBI) strong 34 46
  Rhizobium sp. OAE497 ABIE40_RS07355 type I DNA topoisomerase sig. 37 46
  Dechlorosoma suillum PS Dsui_2608 topoisomerase IA cofit 38 42
  Magnetospirillum magneticum AMB-1 AMB_RS03505 type I DNA topoisomerase no data 35 46
  Agrobacterium fabrum C58 Atu1304 DNA topoisomerase I no data 34 46
  Phaeobacter inhibens DSM 17395 PGA1_c06220 DNA topoisomerase TopA no data 35 43
  Desulfovibrio vulgaris Hildenborough JW710 DVU3389 topA DNA topoisomerase I (TIGR) no data 29 66
  Caulobacter crescentus NA1000 CCNA_02535 DNA topoisomerase I insig. 32 46
  Caulobacter crescentus NA1000 Δfur CCNA_02535 DNA topoisomerase I no data 32 46
  Sinorhizobium meliloti 1021 SMc01364 DNA topoisomerase I insig. 31 46
  Bosea sp. OAE506 ABIE41_RS17240 type I DNA topoisomerase no data 34 44
  Marinobacter adhaerens HP15 HP15_1186 DNA topoisomerase III insig. 32 44
  Azospirillum sp. SherDot2 MPMX19_01509 DNA topoisomerase 1 no data 38 44
  Sphingomonas koreensis DSMZ 15582 Ga0059261_2450 DNA topoisomerase I, bacterial no data 31 46
  Sphingomonas koreensis DSMZ 15582 Ga0059261_2450 DNA topoisomerase I, bacterial no data 38 33
  Xanthobacter sp. DMC5 GFF934 DNA topoisomerase 1 no data 40 33
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS04230 type I DNA topoisomerase no data 29 46
  Azospirillum brasilense Sp245 AZOBR_RS15890 DNA topoisomerase I strong 32 46
  Shewanella amazonensis SB2B Sama_1322 DNA topoisomerase I (RefSeq) no data 29 64
  Pseudomonas sp. DMC3 GFF1274 DNA topoisomerase 1 no data 30 40
  Pseudomonas aeruginosa PA14 IKLFDK_15320 type I DNA topoisomerase no data 35 40
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS04230 type I DNA topoisomerase no data 42 23
  Pseudomonas stutzeri RCH2 Psest_2651 DNA topoisomerase I, bacterial strong 32 40
  Rahnella sp. WP5 EX31_RS09895 type I DNA topoisomerase cofit 30 62
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.2568.1 DNA topoisomerase III (EC 5.99.1.2) in PFGI-1-like cluster insig. 52 17
  Serratia liquefaciens MT49 IAI46_13970 type I DNA topoisomerase sig. 30 62
  Pectobacterium carotovorum WPP14 HER17_RS10875 type I DNA topoisomerase no data 32 38
  Pseudomonas syringae pv. syringae B728a Psyr_3287 DNA topoisomerase I strong 29 40
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3287 DNA topoisomerase I no data 29 40
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS05145 NERD domain-containing protein insig. 56 19
  Sphingomonas koreensis DSMZ 15582 Ga0059261_2450 DNA topoisomerase I, bacterial no data 48 22
  Pseudomonas fluorescens SBW25 PFLU_RS07665 type I DNA topoisomerase strong 29 40
  Pseudomonas fluorescens SBW25-INTG PFLU_RS07665 type I DNA topoisomerase strong 29 40
  Pseudomonas simiae WCS417 PS417_07590 DNA topoisomerase I no data 29 40
  Pseudomonas fluorescens FW300-N2C3 AO356_02315 DNA topoisomerase I strong 29 40
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2287 DNA topoisomerase I (EC 5.99.1.2) no data 29 40
  Alteromonas macleodii MIT1002 MIT1002_01705 DNA topoisomerase 1 no data 28 46
  Rhodopseudomonas palustris CGA009 TX73_016155 type I DNA topoisomerase strong 39 23
  Pseudomonas sp. RS175 PFR28_01113 DNA topoisomerase 1 strong 29 40
  Caulobacter crescentus NA1000 CCNA_02535 DNA topoisomerase I insig. 47 17
  Caulobacter crescentus NA1000 Δfur CCNA_02535 DNA topoisomerase I no data 47 17
  Pseudomonas sp. S08-1 OH686_21940 DNA topoisomerase I no data 30 40
  Pseudomonas sp. SVBP6 COO64_RS09410 topA type I DNA topoisomerase strong 30 40