Conservation of cofitness between Xcc-8004.5020.1 and Xcc-8004.3281.1 in Xanthomonas campestris pv. campestris strain 8004

74 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Xanthomonas campestris pv. campestris strain 8004 1.0 Xcc-8004.5020.1 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 1.0 Xcc-8004.3281.1 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) 0.87 13
Lysobacter sp. OAE881 0.57 ABIE51_RS01815 shikimate dehydrogenase 0.70 ABIE51_RS12135 3-phosphoshikimate 1-carboxyvinyltransferase — —
Dyella japonica UNC79MFTsu3.2 0.51 ABZR86_RS14985 shikimate dehydrogenase 0.68 ABZR86_RS02230 3-phosphoshikimate 1-carboxyvinyltransferase 0.94 51
Rhodanobacter denitrificans MT42 0.49 LRK55_RS08360 shikimate dehydrogenase 0.65 LRK55_RS00130 3-phosphoshikimate 1-carboxyvinyltransferase low > 63
Rhodanobacter denitrificans FW104-10B01 0.49 LRK54_RS08595 shikimate dehydrogenase 0.64 LRK54_RS00390 3-phosphoshikimate 1-carboxyvinyltransferase — —
Rhodanobacter sp. FW510-T8 0.46 OKGIIK_15365 aroE shikimate dehydrogenase 0.68 OKGIIK_06920 aroA 3-phosphoshikimate 1-carboxyvinyltransferase — —
Shewanella oneidensis MR-1 0.40 SO0040 aroE shikimate 5-dehydrogenase (NCBI ptt file) 0.17 SO2404 aroA 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI ptt file) 0.96 3
Serratia liquefaciens MT49 0.39 IAI46_23240 shikimate dehydrogenase 0.17 IAI46_08640 3-phosphoshikimate 1-carboxyvinyltransferase 0.62 38
Vibrio cholerae E7946 ATCC 55056 0.38 CSW01_00280 shikimate dehydrogenase 0.18 CSW01_08705 3-phosphoshikimate 1-carboxyvinyltransferase low > 62
Shewanella loihica PV-4 0.38 Shew_3727 shikimate 5-dehydrogenase (RefSeq) 0.17 Shew_1952 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) 0.92 2
Shewanella sp. ANA-3 0.38 Shewana3_0043 aroE shikimate 5-dehydrogenase (RefSeq) 0.18 Shewana3_1975 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) 0.96 3
Rahnella sp. WP5 0.37 EX31_RS15950 shikimate dehydrogenase 0.18 EX31_RS18250 3-phosphoshikimate 1-carboxyvinyltransferase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.37 Psyr_0025 shikimate dehydrogenase 0.17 Psyr_0888 3-phosphoshikimate 1-carboxyvinyltransferase — —
Pseudomonas syringae pv. syringae B728a 0.37 Psyr_0025 shikimate dehydrogenase 0.17 Psyr_0888 3-phosphoshikimate 1-carboxyvinyltransferase — —
Herbaspirillum seropedicae SmR1 0.37 HSERO_RS01990 shikimate 5-dehydrogenase 0.18 HSERO_RS18420 3-phosphoshikimate 1-carboxyvinyltransferase — —
Pantoea sp. MT58 0.37 IAI47_02315 shikimate dehydrogenase 0.16 IAI47_12860 3-phosphoshikimate 1-carboxyvinyltransferase — —
Dickeya dadantii 3937 0.36 DDA3937_RS19100 shikimate dehydrogenase 0.16 DDA3937_RS09675 3-phosphoshikimate 1-carboxyvinyltransferase — —
Ralstonia solanacearum PSI07 0.36 RPSI07_RS11300 shikimate dehydrogenase 0.17 RPSI07_RS19695 3-phosphoshikimate 1-carboxyvinyltransferase — —
Klebsiella michiganensis M5al 0.36 BWI76_RS25645 shikimate dehydrogenase 0.16 BWI76_RS09760 3-phosphoshikimate 1-carboxyvinyltransferase 0.72 54
Shewanella amazonensis SB2B 0.36 Sama_0052 shikimate dehydrogenase (RefSeq) 0.16 Sama_1734 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) 0.81 3
Escherichia coli BW25113 0.36 b3281 aroE dehydroshikimate reductase, NAD(P)-binding (NCBI) 0.15 b0908 aroA 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI) 0.95 3
Escherichia coli HS(pFamp)R (ATCC 700891) 0.36 OHPLBJKB_00422 Shikimate dehydrogenase (NADP(+)) 0.15 OHPLBJKB_02760 3-phosphoshikimate 1-carboxyvinyltransferase low > 73
Paraburkholderia sabiae LMG 24235 0.36 QEN71_RS27130 shikimate dehydrogenase 0.15 QEN71_RS04085 3-phosphoshikimate 1-carboxyvinyltransferase 0.76 18
Dickeya dianthicola 67-19 0.36 HGI48_RS19190 shikimate dehydrogenase 0.16 HGI48_RS09685 3-phosphoshikimate 1-carboxyvinyltransferase — —
Escherichia coli BL21 0.36 ECD_03132 dehydroshikimate reductase, NAD(P)-binding 0.15 ECD_00912 5-enolpyruvylshikimate-3-phosphate synthetase 0.72 2
Paraburkholderia bryophila 376MFSha3.1 0.36 H281DRAFT_06291 shikimate dehydrogenase (EC 1.1.1.25) 0.15 H281DRAFT_03922 3-phosphoshikimate 1-carboxyvinyltransferase — —
Escherichia fergusonii Becca 0.36 EFB2_00542 Shikimate dehydrogenase (NADP(+)) 0.15 EFB2_03156 3-phosphoshikimate 1-carboxyvinyltransferase 0.73 10
Escherichia coli ECOR38 0.36 HEPCGN_16385 aroE shikimate dehydrogenase 0.15 HEPCGN_23035 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 0.88 6
Escherichia coli ECRC98 0.36 JDDGAC_21185 aroE shikimate dehydrogenase 0.15 JDDGAC_09095 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 0.90 4
Escherichia coli ECRC102 0.36 NIAGMN_15325 aroE shikimate dehydrogenase 0.15 NIAGMN_03205 aroA 3-phosphoshikimate 1-carboxyvinyltransferase — —
Escherichia coli ECRC99 0.36 KEDOAH_10585 aroE shikimate dehydrogenase 0.15 KEDOAH_22250 aroA 3-phosphoshikimate 1-carboxyvinyltransferase — —
Ralstonia solanacearum UW163 0.36 UW163_RS07680 shikimate dehydrogenase 0.17 UW163_RS16035 3-phosphoshikimate 1-carboxyvinyltransferase — —
Escherichia coli Nissle 1917 0.36 ECOLIN_RS18840 shikimate dehydrogenase 0.15 ECOLIN_RS04810 3-phosphoshikimate 1-carboxyvinyltransferase 0.68 41
Ralstonia sp. UNC404CL21Col 0.36 ABZR87_RS01605 shikimate dehydrogenase 0.16 ABZR87_RS09465 3-phosphoshikimate 1-carboxyvinyltransferase 0.59 32
Escherichia coli ECRC101 0.36 MCAODC_08085 aroE shikimate dehydrogenase 0.15 MCAODC_24875 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 0.94 2
Ralstonia solanacearum IBSBF1503 0.36 RALBFv3_RS05945 shikimate dehydrogenase 0.17 RALBFv3_RS13775 3-phosphoshikimate 1-carboxyvinyltransferase low > 76
Escherichia coli ECRC100 0.36 OKFHMN_17565 aroE shikimate dehydrogenase 0.15 OKFHMN_05485 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 0.98 1
Dickeya dianthicola ME23 0.36 DZA65_RS20315 shikimate dehydrogenase 0.16 DZA65_RS09995 3-phosphoshikimate 1-carboxyvinyltransferase — —
Ralstonia solanacearum GMI1000 0.35 RS_RS13890 shikimate dehydrogenase 0.17 RS_RS04510 3-phosphoshikimate 1-carboxyvinyltransferase low > 80
Enterobacter asburiae PDN3 0.35 EX28DRAFT_0046 shikimate dehydrogenase 0.15 EX28DRAFT_2027 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) low > 76
Pectobacterium carotovorum WPP14 0.35 HER17_RS02250 shikimate dehydrogenase 0.17 HER17_RS12285 3-phosphoshikimate 1-carboxyvinyltransferase 0.91 39
Escherichia coli ECRC62 0.35 BNILDI_02165 aroE shikimate dehydrogenase 0.15 BNILDI_20300 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 0.97 2
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.35 GFF2397 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.15 GFF3665 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) low > 78
Escherichia coli ECOR27 0.35 NOLOHH_09355 aroE shikimate dehydrogenase 0.15 NOLOHH_22045 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 0.92 4
Enterobacter sp. TBS_079 0.35 MPMX20_04189 Shikimate dehydrogenase (NADP(+)) 0.15 MPMX20_01567 3-phosphoshikimate 1-carboxyvinyltransferase 0.94 1
Paraburkholderia graminis OAS925 0.35 ABIE53_003560 shikimate dehydrogenase 0.14 ABIE53_003154 3-phosphoshikimate 1-carboxyvinyltransferase — —
Burkholderia phytofirmans PsJN 0.34 BPHYT_RS16975 shikimate 5-dehydrogenase 0.16 BPHYT_RS14895 3-phosphoshikimate 1-carboxyvinyltransferase 0.76 3
Erwinia tracheiphila SCR3 0.34 LU632_RS22445 aroE shikimate dehydrogenase 0.16 LU632_RS09795 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 0.69 1
Cupriavidus basilensis FW507-4G11 0.30 RR42_RS17645 shikimate dehydrogenase 0.14 RR42_RS04475 3-phosphoshikimate 1-carboxyvinyltransferase 0.87 6
Kangiella aquimarina DSM 16071 0.30 B158DRAFT_0259 shikimate 5-dehydrogenase 0.13 B158DRAFT_2432 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) 0.83 2
Phaeobacter inhibens DSM 17395 0.26 PGA1_c35150 shikimate dehydrogenase AroE 0.40 PGA1_c04810 3-phosphoshikimate 1-carboxyvinyltransferase AroA — —
Alteromonas macleodii MIT1002 0.26 MIT1002_00029 Shikimate dehydrogenase 0.17 MIT1002_02191 3-phosphoshikimate 1-carboxyvinyltransferase — —
Agrobacterium fabrum C58 0.24 Atu0003 shikimate 5-dehydrogenase 0.14 Atu0642 3-phosphoshikimate 1-carboxyvinyltransferase — —
Dinoroseobacter shibae DFL-12 0.24 Dshi_3450 shikimate 5-dehydrogenase (RefSeq) 0.37 Dshi_1022 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) — —
Bosea sp. OAE506 0.24 ABIE41_RS04650 shikimate dehydrogenase 0.39 ABIE41_RS03910 3-phosphoshikimate 1-carboxyvinyltransferase — —
Sinorhizobium meliloti 1021 0.23 SMc02791 shikimate 5-dehydrogenase 0.40 SMc00333 3-phosphoshikimate 1-carboxyvinyltransferase — —
Desulfovibrio vulgaris Hildenborough JW710 0.23 DVU0115 aroE shikimate 5-dehydrogenase (TIGR) 0.15 DVU0463 aroA 3-phosphoshikimate 1-carboxyvinyltransferase (TIGR) — —
Rhodopseudomonas palustris CGA009 0.22 TX73_022410 shikimate dehydrogenase 0.37 TX73_000320 3-phosphoshikimate 1-carboxyvinyltransferase — —
Azospirillum sp. SherDot2 0.22 MPMX19_02560 Shikimate dehydrogenase (NADP(+)) 0.37 MPMX19_02233 3-phosphoshikimate 1-carboxyvinyltransferase — —
Rhizobium sp. OAE497 0.22 ABIE40_RS19250 shikimate dehydrogenase 0.14 ABIE40_RS05420 3-phosphoshikimate 1-carboxyvinyltransferase — —
Rhodospirillum rubrum S1H 0.22 Rru_A3613 Quinate/Shikimate 5-dehydrogenase (NCBI) 0.40 Rru_A0295 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI) — —
Synechococcus elongatus PCC 7942 0.20 Synpcc7942_2467 aroE shikimate 5-dehydrogenase 0.40 Synpcc7942_0232 aroA 3-phosphoshikimate 1-carboxyvinyltransferase — —
Methanococcus maripaludis S2 0.20 MMP_RS04855 shikimate dehydrogenase 0.20 MMP_RS06205 3-phosphoshikimate 1-carboxyvinyltransferase — —
Magnetospirillum magneticum AMB-1 0.19 AMB_RS23010 shikimate dehydrogenase 0.39 AMB_RS21555 3-phosphoshikimate 1-carboxyvinyltransferase — —
Methanococcus maripaludis JJ 0.19 MMJJ_RS00280 shikimate dehydrogenase 0.21 MMJJ_RS08145 3-phosphoshikimate 1-carboxyvinyltransferase — —
Desulfovibrio vulgaris Miyazaki F 0.19 DvMF_1962 shikimate 5-dehydrogenase (RefSeq) 0.15 DvMF_1748 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) — —
Caulobacter crescentus NA1000 Δfur 0.19 CCNA_00003 shikimate 5-dehydrogenase 0.40 CCNA_03704 3-phosphoshikimate 1-carboxyvinyltransferase low > 67
Caulobacter crescentus NA1000 0.19 CCNA_00003 shikimate dehydrogenase (EC 1.1.1.25) (from data) 0.40 CCNA_03704 3-phosphoshikimate 1-carboxyvinyltransferase — —
Brevundimonas sp. GW460-12-10-14-LB2 0.18 A4249_RS13660 shikimate dehydrogenase 0.39 A4249_RS10920 3-phosphoshikimate 1-carboxyvinyltransferase — —
Fusobacterium nucleatum SB010 0.18 HUW76_10445 shikimate dehydrogenase 0.14 HUW76_05445 3-phosphoshikimate 1-carboxyvinyltransferase 0.85 9
Azospirillum brasilense Sp245 0.17 AZOBR_RS01765 shikimate 5-dehydrogenase 0.37 AZOBR_RS03090 3-phosphoshikimate 1-carboxyvinyltransferase — —
Sphingomonas koreensis DSMZ 15582 0.17 Ga0059261_2194 shikimate dehydrogenase (EC 1.1.1.25) (from data) 0.42 Ga0059261_0167 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.13 Echvi_1145 Shikimate 5-dehydrogenase 0.09 Echvi_0122 5-enolpyruvylshikimate-3-phosphate synthase — —
Bacteroides ovatus ATCC 8483 0.12 BACOVA_05065 putative shikimate dehydrogenase 0.14 BACOVA_03157 3-phosphoshikimate 1-carboxyvinyltransferase — —
Mycobacterium tuberculosis H37Rv 0.12 Rv2552c Probable shikimate 5-dehydrogenase AroE (5-dehydroshikimate reductase) 0.12 Rv3227 3-phosphoshikimate 1-carboxyvinyltransferase AroA (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase) (EPSPS) — —

Not shown: 20 genomes with orthologs for Xcc-8004.5020.1 only; 9 genomes with orthologs for Xcc-8004.3281.1 only