Conservation of cofitness between Xcc-8004.4620.1 and Xcc-8004.3281.1 in Xanthomonas campestris pv. campestris strain 8004

72 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Xanthomonas campestris pv. campestris strain 8004 1.0 Xcc-8004.4620.1 Alanine racemase (EC 5.1.1.1) 1.0 Xcc-8004.3281.1 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) 0.74 2
Rhodanobacter denitrificans MT42 0.67 LRK55_RS00355 alanine racemase 0.65 LRK55_RS00130 3-phosphoshikimate 1-carboxyvinyltransferase — —
Rhodanobacter sp. FW510-T8 0.67 OKGIIK_06670 alr alanine racemase 0.68 OKGIIK_06920 aroA 3-phosphoshikimate 1-carboxyvinyltransferase — —
Rhodanobacter denitrificans FW104-10B01 0.67 LRK54_RS00585 alanine racemase 0.64 LRK54_RS00390 3-phosphoshikimate 1-carboxyvinyltransferase — —
Pseudomonas syringae pv. syringae B728a 0.62 Psyr_0237 alanine racemase 0.17 Psyr_0888 3-phosphoshikimate 1-carboxyvinyltransferase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.62 Psyr_0237 alanine racemase 0.17 Psyr_0888 3-phosphoshikimate 1-carboxyvinyltransferase — —
Klebsiella michiganensis M5al 0.40 BWI76_RS01920 alanine racemase 0.16 BWI76_RS09760 3-phosphoshikimate 1-carboxyvinyltransferase low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.40 GFF1422 Alanine racemase (EC 5.1.1.1) 0.15 GFF3665 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) low > 78
Kangiella aquimarina DSM 16071 0.40 B158DRAFT_2013 alanine racemase 0.13 B158DRAFT_2432 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) low > 40
Escherichia coli Nissle 1917 0.40 ECOLIN_RS23405 alanine racemase 0.15 ECOLIN_RS04810 3-phosphoshikimate 1-carboxyvinyltransferase low > 55
Escherichia coli HS(pFamp)R (ATCC 700891) 0.40 OHPLBJKB_03990 Alanine racemase, biosynthetic 0.15 OHPLBJKB_02760 3-phosphoshikimate 1-carboxyvinyltransferase low > 73
Escherichia coli ECRC62 0.40 BNILDI_06350 alr alanine racemase 0.15 BNILDI_20300 aroA 3-phosphoshikimate 1-carboxyvinyltransferase low > 75
Escherichia coli BL21 0.40 ECD_03925 alanine racemase, biosynthetic, PLP-binding 0.15 ECD_00912 5-enolpyruvylshikimate-3-phosphate synthetase low > 61
Escherichia coli BW25113 0.40 b4053 alr alanine racemase (NCBI) 0.15 b0908 aroA 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI) low > 76
Escherichia coli ECOR27 0.40 NOLOHH_05175 alr alanine racemase 0.15 NOLOHH_22045 aroA 3-phosphoshikimate 1-carboxyvinyltransferase low > 75
Escherichia coli ECOR38 0.40 HEPCGN_11540 alr alanine racemase 0.15 HEPCGN_23035 aroA 3-phosphoshikimate 1-carboxyvinyltransferase low > 87
Escherichia fergusonii Becca 0.40 EFB2_04547 Alanine racemase, biosynthetic 0.15 EFB2_03156 3-phosphoshikimate 1-carboxyvinyltransferase low > 86
Escherichia coli ECRC101 0.40 MCAODC_03435 alr alanine racemase 0.15 MCAODC_24875 aroA 3-phosphoshikimate 1-carboxyvinyltransferase low > 87
Escherichia coli ECRC100 0.40 OKFHMN_12925 alr alanine racemase 0.15 OKFHMN_05485 aroA 3-phosphoshikimate 1-carboxyvinyltransferase low > 80
Escherichia coli ECRC98 0.40 JDDGAC_16560 alr alanine racemase 0.15 JDDGAC_09095 aroA 3-phosphoshikimate 1-carboxyvinyltransferase low > 86
Enterobacter sp. TBS_079 0.40 MPMX20_02698 Alanine racemase, catabolic 0.15 MPMX20_01567 3-phosphoshikimate 1-carboxyvinyltransferase low > 85
Escherichia coli ECRC102 0.40 NIAGMN_10770 alr alanine racemase 0.15 NIAGMN_03205 aroA 3-phosphoshikimate 1-carboxyvinyltransferase — —
Escherichia coli ECRC99 0.40 KEDOAH_15225 alr alanine racemase 0.15 KEDOAH_22250 aroA 3-phosphoshikimate 1-carboxyvinyltransferase — —
Dickeya dadantii 3937 0.39 DDA3937_RS17510 alanine racemase 0.16 DDA3937_RS09675 3-phosphoshikimate 1-carboxyvinyltransferase — —
Vibrio cholerae E7946 ATCC 55056 0.39 CSW01_01955 alanine racemase 0.18 CSW01_08705 3-phosphoshikimate 1-carboxyvinyltransferase — —
Erwinia tracheiphila SCR3 0.39 LU632_RS13065 dadX catabolic alanine racemase DadX 0.16 LU632_RS09795 aroA 3-phosphoshikimate 1-carboxyvinyltransferase — —
Herbaspirillum seropedicae SmR1 0.39 HSERO_RS10740 alanine racemase 0.18 HSERO_RS18420 3-phosphoshikimate 1-carboxyvinyltransferase — —
Enterobacter asburiae PDN3 0.39 EX28DRAFT_4259 alanine racemase 0.15 EX28DRAFT_2027 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) low > 76
Pantoea sp. MT58 0.39 IAI47_08895 catabolic alanine racemase DadX 0.16 IAI47_12860 3-phosphoshikimate 1-carboxyvinyltransferase — —
Dickeya dianthicola 67-19 0.39 HGI48_RS17565 alanine racemase 0.16 HGI48_RS09685 3-phosphoshikimate 1-carboxyvinyltransferase — —
Ralstonia solanacearum GMI1000 0.39 RS_RS06875 alanine racemase 0.17 RS_RS04510 3-phosphoshikimate 1-carboxyvinyltransferase — —
Rahnella sp. WP5 0.39 EX31_RS11885 alanine racemase 0.18 EX31_RS18250 3-phosphoshikimate 1-carboxyvinyltransferase — —
Pectobacterium carotovorum WPP14 0.39 HER17_RS03655 alanine racemase 0.17 HER17_RS12285 3-phosphoshikimate 1-carboxyvinyltransferase low > 75
Dickeya dianthicola ME23 0.39 DZA65_RS18650 alanine racemase 0.16 DZA65_RS09995 3-phosphoshikimate 1-carboxyvinyltransferase — —
Ralstonia sp. UNC404CL21Col 0.38 ABZR87_RS11665 alanine racemase 0.16 ABZR87_RS09465 3-phosphoshikimate 1-carboxyvinyltransferase — —
Serratia liquefaciens MT49 0.38 IAI46_22945 alanine racemase 0.17 IAI46_08640 3-phosphoshikimate 1-carboxyvinyltransferase low > 86
Shewanella amazonensis SB2B 0.38 Sama_3057 alr alanine racemase (RefSeq) 0.16 Sama_1734 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) — —
Ralstonia solanacearum PSI07 0.38 RPSI07_RS17275 alanine racemase 0.17 RPSI07_RS19695 3-phosphoshikimate 1-carboxyvinyltransferase — —
Shewanella oneidensis MR-1 0.38 SO3916 alr alanine racemase, biosynthetic (NCBI ptt file) 0.17 SO2404 aroA 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI ptt file) — —
Ralstonia solanacearum UW163 0.37 UW163_RS13535 alanine racemase 0.17 UW163_RS16035 3-phosphoshikimate 1-carboxyvinyltransferase — —
Shewanella sp. ANA-3 0.37 Shewana3_0714 alr alanine racemase (RefSeq) 0.18 Shewana3_1975 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) — —
Ralstonia solanacearum IBSBF1503 0.37 RALBFv3_RS00205 alanine racemase 0.17 RALBFv3_RS13775 3-phosphoshikimate 1-carboxyvinyltransferase — —
Shewanella loihica PV-4 0.37 Shew_3277 alr alanine racemase (RefSeq) 0.17 Shew_1952 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) — —
Paraburkholderia graminis OAS925 0.37 ABIE53_002527 alanine racemase 0.14 ABIE53_003154 3-phosphoshikimate 1-carboxyvinyltransferase — —
Alteromonas macleodii MIT1002 0.37 MIT1002_00544 Alanine racemase 0.17 MIT1002_02191 3-phosphoshikimate 1-carboxyvinyltransferase — —
Paraburkholderia bryophila 376MFSha3.1 0.37 H281DRAFT_00589 alanine racemase 0.15 H281DRAFT_03922 3-phosphoshikimate 1-carboxyvinyltransferase — —
Paraburkholderia sabiae LMG 24235 0.36 QEN71_RS06315 alanine racemase 0.15 QEN71_RS04085 3-phosphoshikimate 1-carboxyvinyltransferase — —
Burkholderia phytofirmans PsJN 0.35 BPHYT_RS12240 alanine racemase 0.16 BPHYT_RS14895 3-phosphoshikimate 1-carboxyvinyltransferase — —
Cupriavidus basilensis FW507-4G11 0.35 RR42_RS12035 alanine racemase 0.14 RR42_RS04475 3-phosphoshikimate 1-carboxyvinyltransferase — —
Dyella japonica UNC79MFTsu3.2 0.31 ABZR86_RS08850 alanine racemase 0.68 ABZR86_RS02230 3-phosphoshikimate 1-carboxyvinyltransferase — —
Synechococcus elongatus PCC 7942 0.25 Synpcc7942_2201 alr alanine racemase 0.40 Synpcc7942_0232 aroA 3-phosphoshikimate 1-carboxyvinyltransferase — —
Methanococcus maripaludis JJ 0.25 MMJJ_RS06585 alanine racemase 0.21 MMJJ_RS08145 3-phosphoshikimate 1-carboxyvinyltransferase — —
Lysobacter sp. OAE881 0.25 ABIE51_RS09255 alanine racemase 0.70 ABIE51_RS12135 3-phosphoshikimate 1-carboxyvinyltransferase — —
Methanococcus maripaludis S2 0.25 MMP_RS07770 alanine racemase 0.20 MMP_RS06205 3-phosphoshikimate 1-carboxyvinyltransferase — —
Brevundimonas sp. GW460-12-10-14-LB2 0.23 A4249_RS03755 alanine racemase 0.39 A4249_RS10920 3-phosphoshikimate 1-carboxyvinyltransferase — —
Caulobacter crescentus NA1000 Δfur 0.23 CCNA_01733 alanine racemase 0.40 CCNA_03704 3-phosphoshikimate 1-carboxyvinyltransferase low > 67
Desulfovibrio vulgaris Hildenborough JW710 0.23 DVU0955 alr alanine racemase (TIGR) 0.15 DVU0463 aroA 3-phosphoshikimate 1-carboxyvinyltransferase (TIGR) — —
Caulobacter crescentus NA1000 0.23 CCNA_01733 alanine racemase 0.40 CCNA_03704 3-phosphoshikimate 1-carboxyvinyltransferase — —
Desulfovibrio vulgaris Miyazaki F 0.22 DvMF_1349 alanine racemase (RefSeq) 0.15 DvMF_1748 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) — —
Azospirillum sp. SherDot2 0.22 MPMX19_06140 Alanine racemase, biosynthetic 0.37 MPMX19_02233 3-phosphoshikimate 1-carboxyvinyltransferase — —
Bosea sp. OAE506 0.21 ABIE41_RS17795 alanine racemase 0.39 ABIE41_RS03910 3-phosphoshikimate 1-carboxyvinyltransferase — —
Rhodopseudomonas palustris CGA009 0.21 TX73_015960 alanine racemase 0.37 TX73_000320 3-phosphoshikimate 1-carboxyvinyltransferase — —
Agrobacterium fabrum C58 0.21 Atu3292 alanine racemase 0.14 Atu0642 3-phosphoshikimate 1-carboxyvinyltransferase — —
Azospirillum brasilense Sp245 0.20 AZOBR_RS08350 alanine racemase 0.37 AZOBR_RS03090 3-phosphoshikimate 1-carboxyvinyltransferase — —
Rhodospirillum rubrum S1H 0.20 Rru_A0409 Alanine racemase region (NCBI) 0.40 Rru_A0295 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI) — —
Phaeobacter inhibens DSM 17395 0.19 PGA1_c10880 alanine racemase, biosynthetic 0.40 PGA1_c04810 3-phosphoshikimate 1-carboxyvinyltransferase AroA — —
Magnetospirillum magneticum AMB-1 0.19 AMB_RS10575 alanine racemase 0.39 AMB_RS21555 3-phosphoshikimate 1-carboxyvinyltransferase — —
Dinoroseobacter shibae DFL-12 0.19 Dshi_2378 alanine racemase (RefSeq) 0.37 Dshi_1022 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) — —
Sinorhizobium meliloti 1021 0.18 SMc00557 alanine racemase 0.40 SMc00333 3-phosphoshikimate 1-carboxyvinyltransferase — —
Rhizobium sp. OAE497 0.18 ABIE40_RS06295 alanine racemase 0.14 ABIE40_RS05420 3-phosphoshikimate 1-carboxyvinyltransferase — —
Sphingomonas koreensis DSMZ 15582 0.17 Ga0059261_0986 alanine racemase 0.42 Ga0059261_0167 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) — —
Fusobacterium nucleatum SB010 0.16 HUW76_08815 alanine racemase 0.14 HUW76_05445 3-phosphoshikimate 1-carboxyvinyltransferase low > 35
Bifidobacterium breve UCC2003 0.14 BBR_RS13170 alanine racemase 0.11 BBR_RS14370 3-phosphoshikimate 1-carboxyvinyltransferase — —

Not shown: 20 genomes with orthologs for Xcc-8004.4620.1 only; 11 genomes with orthologs for Xcc-8004.3281.1 only