| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Xanthomonas campestris pv. campestris strain 8004 | 1.0 | Xcc-8004.3403.1 | | Fumarate hydratase class II (EC 4.2.1.2) | 1.0 | Xcc-8004.3281.1 | | 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) | 0.46 | 4 |
| Lysobacter sp. OAE881 | 0.77 | ABIE51_RS09015 | | class II fumarate hydratase | 0.70 | ABIE51_RS12135 | | 3-phosphoshikimate 1-carboxyvinyltransferase | — | — |
| Rhodanobacter sp. FW510-T8 | 0.71 | OKGIIK_06345 | aspA | aspartate ammonia-lyase | 0.68 | OKGIIK_06920 | aroA | 3-phosphoshikimate 1-carboxyvinyltransferase | — | — |
| Rhodanobacter denitrificans MT42 | 0.70 | LRK55_RS00660 | | class II fumarate hydratase | 0.65 | LRK55_RS00130 | | 3-phosphoshikimate 1-carboxyvinyltransferase | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.70 | LRK54_RS00885 | | class II fumarate hydratase | 0.64 | LRK54_RS00390 | | 3-phosphoshikimate 1-carboxyvinyltransferase | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.70 | ABZR86_RS05855 | | class II fumarate hydratase | 0.68 | ABZR86_RS02230 | | 3-phosphoshikimate 1-carboxyvinyltransferase | low | > 74 |
| Vibrio cholerae E7946 ATCC 55056 | 0.60 | CSW01_07895 | | class II fumarate hydratase | 0.18 | CSW01_08705 | | 3-phosphoshikimate 1-carboxyvinyltransferase | low | > 62 |
| Shewanella amazonensis SB2B | 0.56 | Sama_0822 | | fumarate hydratase (RefSeq) | 0.16 | Sama_1734 | | 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) | low | > 62 |
| Shewanella loihica PV-4 | 0.55 | Shew_0068 | | fumarate lyase (RefSeq) | 0.17 | Shew_1952 | | 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) | low | > 60 |
| Alteromonas macleodii MIT1002 | 0.53 | MIT1002_03167 | | Fumarate hydratase class II | 0.17 | MIT1002_02191 | | 3-phosphoshikimate 1-carboxyvinyltransferase | — | — |
| Kangiella aquimarina DSM 16071 | 0.49 | B158DRAFT_1200 | | fumarase, class II (EC 4.2.1.2) | 0.13 | B158DRAFT_2432 | | 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) | low | > 40 |
| Mycobacterium tuberculosis H37Rv | 0.48 | Rv1098c | | Probable fumarase Fum (fumarate hydratase) | 0.12 | Rv3227 | | 3-phosphoshikimate 1-carboxyvinyltransferase AroA (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase) (EPSPS) | — | — |
| Escherichia coli Nissle 1917 | 0.46 | ECOLIN_RS08995 | | class II fumarate hydratase | 0.15 | ECOLIN_RS04810 | | 3-phosphoshikimate 1-carboxyvinyltransferase | — | — |
| Escherichia coli ECOR38 | 0.46 | HEPCGN_06025 | fumC | class II fumarate hydratase | 0.15 | HEPCGN_23035 | aroA | 3-phosphoshikimate 1-carboxyvinyltransferase | low | > 87 |
| Escherichia coli ECOR27 | 0.46 | NOLOHH_18155 | fumC | class II fumarate hydratase | 0.15 | NOLOHH_22045 | aroA | 3-phosphoshikimate 1-carboxyvinyltransferase | low | > 75 |
| Escherichia fergusonii Becca | 0.46 | EFB2_02381 | | Fumarate hydratase class II | 0.15 | EFB2_03156 | | 3-phosphoshikimate 1-carboxyvinyltransferase | low | > 86 |
| Escherichia coli BL21 | 0.46 | ECD_01580 | | fumarate hydratase (fumarase C),aerobic Class II | 0.15 | ECD_00912 | | 5-enolpyruvylshikimate-3-phosphate synthetase | — | — |
| Escherichia coli ECRC99 | 0.45 | KEDOAH_00455 | fumC | class II fumarate hydratase | 0.15 | KEDOAH_22250 | aroA | 3-phosphoshikimate 1-carboxyvinyltransferase | — | — |
| Escherichia coli ECRC101 | 0.45 | MCAODC_17760 | fumC | class II fumarate hydratase | 0.15 | MCAODC_24875 | aroA | 3-phosphoshikimate 1-carboxyvinyltransferase | low | > 87 |
| Escherichia coli BW25113 | 0.45 | b1611 | fumC | fumarate hydratase (NCBI) | 0.15 | b0908 | aroA | 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI) | low | > 76 |
| Escherichia coli ECRC102 | 0.45 | NIAGMN_00425 | fumC | class II fumarate hydratase | 0.15 | NIAGMN_03205 | aroA | 3-phosphoshikimate 1-carboxyvinyltransferase | — | — |
| Escherichia coli ECRC100 | 0.45 | OKFHMN_27650 | fumC | class II fumarate hydratase | 0.15 | OKFHMN_05485 | aroA | 3-phosphoshikimate 1-carboxyvinyltransferase | low | > 80 |
| Escherichia coli ECRC98 | 0.45 | JDDGAC_02240 | fumC | class II fumarate hydratase | 0.15 | JDDGAC_09095 | aroA | 3-phosphoshikimate 1-carboxyvinyltransferase | low | > 86 |
| Escherichia coli ECRC62 | 0.45 | BNILDI_16945 | fumC | class II fumarate hydratase | 0.15 | BNILDI_20300 | aroA | 3-phosphoshikimate 1-carboxyvinyltransferase | low | > 75 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.45 | OHPLBJKB_02115 | | Fumarate hydratase class II | 0.15 | OHPLBJKB_02760 | | 3-phosphoshikimate 1-carboxyvinyltransferase | low | > 73 |
| Ralstonia solanacearum PSI07 | 0.45 | RPSI07_RS05900 | | class II fumarate hydratase | 0.17 | RPSI07_RS19695 | | 3-phosphoshikimate 1-carboxyvinyltransferase | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.45 | H281DRAFT_04314 | | fumarase, class II | 0.15 | H281DRAFT_03922 | | 3-phosphoshikimate 1-carboxyvinyltransferase | — | — |
| Sinorhizobium meliloti 1021 | 0.45 | SMc00149 | | fumarate hydratase | 0.40 | SMc00333 | | 3-phosphoshikimate 1-carboxyvinyltransferase | — | — |
| Ralstonia solanacearum UW163 | 0.44 | UW163_RS21470 | | class II fumarate hydratase | 0.17 | UW163_RS16035 | | 3-phosphoshikimate 1-carboxyvinyltransferase | — | — |
| Paraburkholderia graminis OAS925 | 0.44 | ABIE53_003084 | | fumarate hydratase class II | 0.14 | ABIE53_003154 | | 3-phosphoshikimate 1-carboxyvinyltransferase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.44 | RALBFv3_RS17680 | | class II fumarate hydratase | 0.17 | RALBFv3_RS13775 | | 3-phosphoshikimate 1-carboxyvinyltransferase | — | — |
| Enterobacter asburiae PDN3 | 0.44 | EX28DRAFT_1608 | | fumarase, class II (EC 4.2.1.2) | 0.15 | EX28DRAFT_2027 | | 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) | low | > 76 |
| Ralstonia sp. UNC404CL21Col | 0.44 | ABZR87_RS18630 | | class II fumarate hydratase | 0.16 | ABZR87_RS09465 | | 3-phosphoshikimate 1-carboxyvinyltransferase | low | > 80 |
| Serratia liquefaciens MT49 | 0.44 | IAI46_11655 | | class II fumarate hydratase | 0.17 | IAI46_08640 | | 3-phosphoshikimate 1-carboxyvinyltransferase | low | > 86 |
| Ralstonia solanacearum GMI1000 | 0.44 | RS_RS23320 | | class II fumarate hydratase | 0.17 | RS_RS04510 | | 3-phosphoshikimate 1-carboxyvinyltransferase | low | > 80 |
| Klebsiella michiganensis M5al | 0.44 | BWI76_RS16270 | | fumarate hydratase, class II | 0.16 | BWI76_RS09760 | | 3-phosphoshikimate 1-carboxyvinyltransferase | low | > 92 |
| Sphingomonas koreensis DSMZ 15582 | 0.44 | Ga0059261_1040 | | fumarase, class II (EC 4.2.1.2) | 0.42 | Ga0059261_0167 | | 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) | — | — |
| Azospirillum sp. SherDot2 | 0.44 | MPMX19_01424 | | Fumarate hydratase class II | 0.37 | MPMX19_02233 | | 3-phosphoshikimate 1-carboxyvinyltransferase | — | — |
| Rahnella sp. WP5 | 0.44 | EX31_RS06965 | | class II fumarate hydratase | 0.18 | EX31_RS18250 | | 3-phosphoshikimate 1-carboxyvinyltransferase | — | — |
| Rhodopseudomonas palustris CGA009 | 0.44 | TX73_018130 | | class II fumarate hydratase | 0.37 | TX73_000320 | | 3-phosphoshikimate 1-carboxyvinyltransferase | — | — |
| Enterobacter sp. TBS_079 | 0.44 | MPMX20_02022 | | Fumarate hydratase class II | 0.15 | MPMX20_01567 | | 3-phosphoshikimate 1-carboxyvinyltransferase | low | > 85 |
| Paraburkholderia sabiae LMG 24235 | 0.44 | QEN71_RS04360 | | class II fumarate hydratase | 0.15 | QEN71_RS04085 | | 3-phosphoshikimate 1-carboxyvinyltransferase | low | > 153 |
| Burkholderia phytofirmans PsJN | 0.44 | BPHYT_RS14615 | | fumarate hydratase | 0.16 | BPHYT_RS14895 | | 3-phosphoshikimate 1-carboxyvinyltransferase | low | > 109 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.44 | GFF1806 | | Fumarate hydratase class II (EC 4.2.1.2) | 0.15 | GFF3665 | | 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) | low | > 78 |
| Erwinia tracheiphila SCR3 | 0.43 | LU632_RS12335 | fumC | class II fumarate hydratase | 0.16 | LU632_RS09795 | aroA | 3-phosphoshikimate 1-carboxyvinyltransferase | low | > 74 |
| Pantoea sp. MT58 | 0.43 | IAI47_10335 | | class II fumarate hydratase | 0.16 | IAI47_12860 | | 3-phosphoshikimate 1-carboxyvinyltransferase | — | — |
| Dickeya dadantii 3937 | 0.43 | DDA3937_RS10655 | | class II fumarate hydratase | 0.16 | DDA3937_RS09675 | | 3-phosphoshikimate 1-carboxyvinyltransferase | — | — |
| Dickeya dianthicola 67-19 | 0.43 | HGI48_RS10655 | | class II fumarate hydratase | 0.16 | HGI48_RS09685 | | 3-phosphoshikimate 1-carboxyvinyltransferase | — | — |
| Pectobacterium carotovorum WPP14 | 0.43 | HER17_RS10755 | | class II fumarate hydratase | 0.17 | HER17_RS12285 | | 3-phosphoshikimate 1-carboxyvinyltransferase | low | > 75 |
| Dickeya dianthicola ME23 | 0.43 | DZA65_RS11125 | | class II fumarate hydratase | 0.16 | DZA65_RS09995 | | 3-phosphoshikimate 1-carboxyvinyltransferase | — | — |
| Herbaspirillum seropedicae SmR1 | 0.42 | HSERO_RS07610 | | fumarate hydratase | 0.18 | HSERO_RS18420 | | 3-phosphoshikimate 1-carboxyvinyltransferase | — | — |
| Azospirillum brasilense Sp245 | 0.42 | AZOBR_RS06120 | | fumarate hydratase | 0.37 | AZOBR_RS03090 | | 3-phosphoshikimate 1-carboxyvinyltransferase | — | — |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.42 | A4249_RS05005 | | class II fumarate hydratase | 0.39 | A4249_RS10920 | | 3-phosphoshikimate 1-carboxyvinyltransferase | — | — |
| Rhizobium sp. OAE497 | 0.42 | ABIE40_RS10540 | | class II fumarate hydratase | 0.14 | ABIE40_RS05420 | | 3-phosphoshikimate 1-carboxyvinyltransferase | — | — |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.42 | DVU0080 | fumC | fumarate hydratase, class II (TIGR) | 0.15 | DVU0463 | aroA | 3-phosphoshikimate 1-carboxyvinyltransferase (TIGR) | — | — |
| Magnetospirillum magneticum AMB-1 | 0.42 | AMB_RS18480 | | class II fumarate hydratase | 0.39 | AMB_RS21555 | | 3-phosphoshikimate 1-carboxyvinyltransferase | — | — |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.41 | CA265_RS23855 | | fumarate hydratase, class II | 0.11 | CA265_RS11640 | | 3-phosphoshikimate 1-carboxyvinyltransferase | — | — |
| Rhodospirillum rubrum S1H | 0.41 | Rru_A2129 | | Fumarate hydratase, class II (NCBI) | 0.40 | Rru_A0295 | | 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI) | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.41 | Psyr_3661 | | Fumarate hydratase, class II | 0.17 | Psyr_0888 | | 3-phosphoshikimate 1-carboxyvinyltransferase | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.41 | Psyr_3661 | | Fumarate hydratase, class II | 0.17 | Psyr_0888 | | 3-phosphoshikimate 1-carboxyvinyltransferase | — | — |
| Synechococcus elongatus PCC 7942 | 0.41 | Synpcc7942_1007 | fumC | fumarate hydratase | 0.40 | Synpcc7942_0232 | aroA | 3-phosphoshikimate 1-carboxyvinyltransferase | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.40 | RR42_RS33090 | | fumarate hydratase | 0.14 | RR42_RS04475 | | 3-phosphoshikimate 1-carboxyvinyltransferase | low | > 128 |
| Agrobacterium fabrum C58 | 0.40 | Atu1616 | | fumarate hydratase | 0.14 | Atu0642 | | 3-phosphoshikimate 1-carboxyvinyltransferase | — | — |
| Dinoroseobacter shibae DFL-12 | 0.40 | Dshi_2334 | | fumarate hydratase, class II (RefSeq) | 0.37 | Dshi_1022 | | 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) | — | — |
| Bosea sp. OAE506 | 0.40 | ABIE41_RS12805 | | class II fumarate hydratase | 0.39 | ABIE41_RS03910 | | 3-phosphoshikimate 1-carboxyvinyltransferase | — | — |
| Phaeobacter inhibens DSM 17395 | 0.40 | PGA1_c13520 | | fumarate hydratase class II | 0.40 | PGA1_c04810 | | 3-phosphoshikimate 1-carboxyvinyltransferase AroA | — | — |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.40 | CA264_17145 | | class II fumarate hydratase | 0.10 | CA264_13100 | | 3-phosphoshikimate 1-carboxyvinyltransferase | — | — |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.40 | ABZR88_RS20230 | | class II fumarate hydratase | 0.12 | ABZR88_RS07000 | | 3-phosphoshikimate 1-carboxyvinyltransferase | — | — |
| Caulobacter crescentus NA1000 Δfur | 0.40 | CCNA_02194 | | fumarate hydratase | 0.40 | CCNA_03704 | | 3-phosphoshikimate 1-carboxyvinyltransferase | — | — |
| Caulobacter crescentus NA1000 | 0.40 | CCNA_02194 | | fumarate hydratase | 0.40 | CCNA_03704 | | 3-phosphoshikimate 1-carboxyvinyltransferase | — | — |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.39 | Echvi_1329 | | fumarate hydratase, class II | 0.09 | Echvi_0122 | | 5-enolpyruvylshikimate-3-phosphate synthase | — | — |
| Desulfovibrio vulgaris Miyazaki F | 0.36 | DvMF_0565 | aspA | aspartate ammonia-lyase (RefSeq) | 0.15 | DvMF_1748 | | 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) | — | — |
| Phocaeicola dorei CL03T12C01 | 0.35 | ABI39_RS20055 | | aspartate ammonia-lyase | 0.12 | ABI39_RS09575 | | 3-phosphoshikimate 1-carboxyvinyltransferase | low | > 72 |
| Phocaeicola vulgatus CL09T03C04 | 0.35 | HMPREF1058_RS06295 | | aspartate ammonia-lyase | 0.12 | HMPREF1058_RS13970 | | 3-phosphoshikimate 1-carboxyvinyltransferase | low | > 67 |
| Bacteroides ovatus ATCC 8483 | 0.33 | BACOVA_01069 | | aspartate ammonia-lyase | 0.14 | BACOVA_03157 | | 3-phosphoshikimate 1-carboxyvinyltransferase | — | — |
| Bifidobacterium breve UCC2003 | 0.33 | BBR_RS12120 | | aspartate ammonia-lyase | 0.11 | BBR_RS14370 | | 3-phosphoshikimate 1-carboxyvinyltransferase | low | > 34 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.32 | BT2755 | | aspartate ammonia-lyase (NCBI ptt file) | 0.15 | BT2186 | | 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) (from data) | — | — |
| Bacteroides stercoris CC31F | 0.32 | HMPREF1181_RS11250 | | aspartate ammonia-lyase | 0.12 | HMPREF1181_RS09330 | | 3-phosphoshikimate 1-carboxyvinyltransferase | low | > 56 |
Not shown: 20 genomes with orthologs for Xcc-8004.3403.1 only; 6 genomes with orthologs for Xcc-8004.3281.1 only