| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Xanthomonas campestris pv. campestris strain 8004 | 1.0 | Xcc-8004.4605.1 | | FIG001943: hypothetical protein YajQ | 1.0 | Xcc-8004.1224.1 | | Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB | 0.33 | 10 |
| Lysobacter sp. OAE881 | 0.81 | ABIE51_RS18465 | | YajQ family cyclic di-GMP-binding protein | 0.77 | ABIE51_RS17300 | | radical SAM family heme chaperone HemW | low | > 62 |
| Rhodanobacter sp. FW510-T8 | 0.79 | OKGIIK_03500 | yajQ | YajQ family cyclic di-GMP-binding protein | 0.57 | OKGIIK_12160 | hemW | radical SAM family heme chaperone HemW | low | > 52 |
| Rhodanobacter denitrificans FW104-10B01 | 0.78 | LRK54_RS14675 | | YajQ family cyclic di-GMP-binding protein | 0.60 | LRK54_RS11735 | | radical SAM family heme chaperone HemW | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.78 | LRK55_RS14390 | | YajQ family cyclic di-GMP-binding protein | 0.60 | LRK55_RS11460 | | radical SAM family heme chaperone HemW | low | > 63 |
| Castellaniella sp019104865 MT123 | 0.77 | ABCV34_RS15080 | | YajQ family cyclic di-GMP-binding protein | 0.46 | ABCV34_RS03525 | | radical SAM family heme chaperone HemW | low | > 48 |
| Dyella japonica UNC79MFTsu3.2 | 0.77 | ABZR86_RS00410 | | YajQ family cyclic di-GMP-binding protein | 0.60 | ABZR86_RS11910 | | radical SAM family heme chaperone HemW | low | > 74 |
| Marinobacter adhaerens HP15 | 0.53 | HP15_2364 | | nucleotide-binding protein | 0.43 | HP15_280 | | putative oxygen-independent coproporphyrinogen III oxidase | low | > 73 |
| Pseudomonas stutzeri RCH2 | 0.53 | Psest_1142 | | Uncharacterized protein conserved in bacteria | 0.49 | Psest_0276 | | putative oxygen-independent coproporphyrinogen III oxidase | low | > 67 |
| Pseudomonas sp. RS175 | 0.53 | PFR28_03425 | | hypothetical protein | 0.52 | PFR28_04249 | | Heme chaperone HemW | low | > 88 |
| Pseudomonas simiae WCS417 | 0.52 | PS417_22510 | | nucleotide-binding protein | 0.51 | PS417_26760 | | oxidase | — | — |
| Pseudomonas sp. S08-1 | 0.52 | OH686_08210 | | UPF0234 protein Yitk | 0.52 | OH686_11020 | | Oxygen-independent coproporphyrinogen-III oxidase-like protein YggW | low | > 80 |
| Pseudomonas fluorescens FW300-N2E3 | 0.52 | AO353_03640 | | nucleotide-binding protein | 0.51 | AO353_08200 | | coproporphyrinogen III oxidase | low | > 101 |
| Pseudomonas fluorescens SBW25-INTG | 0.52 | PFLU_RS24150 | | YajQ family cyclic di-GMP-binding protein | 0.51 | PFLU_RS28405 | | radical SAM family heme chaperone HemW | low | > 109 |
| Pseudomonas syringae pv. syringae B728a | 0.52 | Psyr_4087 | | Protein of unknown function DUF520 | 0.49 | Psyr_0471 | | coproporphyrinogen III oxidase, anaerobic | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.52 | Psyr_4087 | | Protein of unknown function DUF520 | 0.49 | Psyr_0471 | | coproporphyrinogen III oxidase, anaerobic | — | — |
| Pseudomonas fluorescens SBW25 | 0.52 | PFLU_RS24150 | | YajQ family cyclic di-GMP-binding protein | 0.51 | PFLU_RS28405 | | radical SAM family heme chaperone HemW | low | > 109 |
| Pseudomonas fluorescens FW300-N1B4 | 0.52 | Pf1N1B4_650 | | FIG001943: hypothetical protein YajQ | 0.51 | Pf1N1B4_2334 | | Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB | low | > 87 |
| Pseudomonas fluorescens GW456-L13 | 0.52 | PfGW456L13_1840 | | FIG001943: hypothetical protein YajQ | 0.51 | PfGW456L13_1003 | | Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.52 | Pf6N2E2_5522 | | FIG001943: hypothetical protein YajQ | 0.52 | Pf6N2E2_4593 | | Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB | low | > 103 |
| Pseudomonas fluorescens FW300-N2C3 | 0.52 | AO356_17960 | | nucleotide-binding protein | 0.51 | AO356_13390 | | coproporphyrinogen III oxidase | low | > 104 |
| Kangiella aquimarina DSM 16071 | 0.51 | B158DRAFT_0029 | | Uncharacterized protein conserved in bacteria | 0.49 | B158DRAFT_0201 | | coproporphyrinogen III oxidase, anaerobic (EC 1.3.99.22) | low | > 40 |
| Pseudomonas putida KT2440 | 0.50 | PP_1352 | | UPF0234 protein PP_1352 | 0.49 | PP_5101 | | coproporphyrinogen/heterocyclic compound oxidase (aerobic) | low | > 96 |
| Escherichia coli ECRC62 | 0.50 | BNILDI_22755 | yajQ | nucleotide binding protein YajQ | 0.48 | BNILDI_09685 | hemW | radical SAM family heme chaperone HemW | low | > 75 |
| Escherichia coli BW25113 | 0.50 | b0426 | yajQ | orf, hypothetical protein (VIMSS) | 0.48 | b2955 | yggW | coproporphyrinogen III oxidase (NCBI) | low | > 76 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.50 | OHPLBJKB_03250 | | hypothetical protein | 0.48 | OHPLBJKB_00761 | | Oxygen-independent coproporphyrinogen-III oxidase-like protein YqeR | low | > 73 |
| Escherichia coli Nissle 1917 | 0.50 | ECOLIN_RS02565 | | nucleotide binding protein YajQ | 0.48 | ECOLIN_RS16435 | | radical SAM family heme chaperone HemW | — | — |
| Escherichia coli ECRC99 | 0.50 | KEDOAH_19575 | yajQ | nucleotide binding protein YajQ | 0.49 | KEDOAH_08905 | hemW | radical SAM family heme chaperone HemW | — | — |
| Escherichia coli ECRC100 | 0.50 | OKFHMN_08390 | yajQ | nucleotide binding protein YajQ | 0.49 | OKFHMN_19235 | hemW | radical SAM family heme chaperone HemW | — | — |
| Escherichia coli ECOR38 | 0.50 | HEPCGN_07020 | yajQ | nucleotide binding protein YajQ | 0.49 | HEPCGN_18540 | hemW | radical SAM family heme chaperone HemW | low | > 87 |
| Escherichia coli ECOR27 | 0.50 | NOLOHH_01340 | yajQ | nucleotide binding protein YajQ | 0.48 | NOLOHH_11105 | hemW | radical SAM family heme chaperone HemW | low | > 75 |
| Escherichia coli ECRC101 | 0.50 | MCAODC_27615 | yajQ | nucleotide binding protein YajQ | 0.49 | MCAODC_09755 | hemW | radical SAM family heme chaperone HemW | low | > 87 |
| Escherichia fergusonii Becca | 0.50 | EFB2_03631 | | hypothetical protein | 0.48 | EFB2_00947 | | Heme chaperone HemW | low | > 86 |
| Escherichia coli ECRC102 | 0.50 | NIAGMN_06445 | yajQ | nucleotide binding protein YajQ | 0.49 | NIAGMN_17000 | hemW | radical SAM family heme chaperone HemW | — | — |
| Escherichia coli ECRC98 | 0.50 | JDDGAC_12045 | yajQ | nucleotide binding protein YajQ | 0.49 | JDDGAC_22865 | hemW | radical SAM family heme chaperone HemW | low | > 86 |
| Escherichia coli BL21 | 0.50 | ECD_00374 | | phage Phi6 host factor, ATP/GTP binding protein | 0.48 | ECD_02785 | | HemN family putative oxidoreductase | low | > 61 |
| Pantoea sp. MT58 | 0.49 | IAI47_14710 | | YajQ family cyclic di-GMP-binding protein | 0.48 | IAI47_03580 | | radical SAM family heme chaperone HemW | low | > 76 |
| Vibrio cholerae E7946 ATCC 55056 | 0.49 | CSW01_07570 | | nucleotide-binding protein | 0.50 | CSW01_02425 | | YggW family oxidoreductase | low | > 62 |
| Enterobacter sp. TBS_079 | 0.48 | MPMX20_01017 | | hypothetical protein | 0.49 | MPMX20_03813 | | Heme chaperone HemW | low | > 85 |
| Dickeya dadantii 3937 | 0.48 | DDA3937_RS05560 | | YajQ family cyclic di-GMP-binding protein | 0.51 | DDA3937_RS17325 | | radical SAM family heme chaperone HemW | low | > 74 |
| Enterobacter asburiae PDN3 | 0.48 | EX28DRAFT_2545 | | Uncharacterized protein conserved in bacteria | 0.49 | EX28DRAFT_2993 | | putative oxygen-independent coproporphyrinogen III oxidase | low | > 76 |
| Dickeya dianthicola 67-19 | 0.48 | HGI48_RS05620 | | YajQ family cyclic di-GMP-binding protein | 0.51 | HGI48_RS17370 | | radical SAM family heme chaperone HemW | — | — |
| Alteromonas macleodii MIT1002 | 0.48 | MIT1002_04129 | | putative nucleotide-binding protein | 0.45 | MIT1002_00939 | | Oxygen-independent coproporphyrinogen-III oxidase 1 | low | > 70 |
| Pectobacterium carotovorum WPP14 | 0.48 | HER17_RS15905 | | YajQ family cyclic di-GMP-binding protein | 0.51 | HER17_RS03785 | | radical SAM family heme chaperone HemW | low | > 75 |
| Shewanella amazonensis SB2B | 0.48 | Sama_2557 | | putative nucleotide-binding protein (RefSeq) | 0.47 | Sama_2483 | | oxygen-independent coproporphyrinogen III oxidase, putative (RefSeq) | low | > 62 |
| Serratia liquefaciens MT49 | 0.47 | IAI46_04955 | | YajQ family cyclic di-GMP-binding protein | 0.50 | IAI46_21435 | | radical SAM family heme chaperone HemW | low | > 86 |
| Klebsiella michiganensis M5al | 0.47 | BWI76_RS06410 | | YajQ family cyclic di-GMP-binding protein | 0.48 | BWI76_RS24120 | | YggW family oxidoreductase | low | > 92 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.47 | GFF4337 | | FIG001943: hypothetical protein YajQ | 0.49 | GFF3058 | | Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB | low | > 78 |
| Dickeya dianthicola ME23 | 0.47 | DZA65_RS05945 | | YajQ family cyclic di-GMP-binding protein | 0.51 | DZA65_RS18460 | | radical SAM family heme chaperone HemW | low | > 75 |
| Erwinia tracheiphila SCR3 | 0.46 | LU632_RS18450 | | YajQ family cyclic di-GMP-binding protein | 0.47 | LU632_RS05445 | hemW | radical SAM family heme chaperone HemW | low | > 74 |
| Shewanella loihica PV-4 | 0.46 | Shew_2893 | | nucleotide-binding protein (RefSeq) | 0.50 | Shew_1131 | | putative oxygen-independent coproporphyrinogen III oxidase (RefSeq) | low | > 60 |
| Herbaspirillum seropedicae SmR1 | 0.46 | HSERO_RS07165 | | nucleotide-binding protein | 0.50 | HSERO_RS10665 | | coproporphyrinogen III oxidase | low | > 78 |
| Shewanella sp. ANA-3 | 0.46 | Shewana3_0782 | | putative nucleotide-binding protein (RefSeq) | 0.49 | Shewana3_1188 | | putative oxygen-independent coproporphyrinogen III oxidase (RefSeq) | low | > 73 |
| Variovorax sp. OAS795 | 0.45 | ABID97_RS21685 | | YajQ family cyclic di-GMP-binding protein | 0.51 | ABID97_RS23630 | | radical SAM family heme chaperone HemW | — | — |
| Azospirillum sp. SherDot2 | 0.45 | MPMX19_04413 | | hypothetical protein | 0.34 | MPMX19_02574 | | Heme chaperone HemW | low | > 112 |
| Rahnella sp. WP5 | 0.45 | EX31_RS22185 | | YajQ family cyclic di-GMP-binding protein | 0.50 | EX31_RS02710 | | radical SAM family heme chaperone HemW | low | > 89 |
| Variovorax sp. SCN45 | 0.45 | GFF3099 | | UPF0234 protein Yitk | 0.51 | GFF2383 | | Oxygen-independent coproporphyrinogen-III oxidase-like protein YggW | — | — |
| Acidovorax sp. GW101-3H11 | 0.44 | Ac3H11_2620 | | FIG001943: hypothetical protein YajQ | 0.49 | Ac3H11_3672 | | Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB | — | — |
| Shewanella oneidensis MR-1 | 0.44 | SO3815 | | conserved hypothetical protein (NCBI ptt file) | 0.49 | SO3359 | | oxygen-independent coproporphyrinogen III oxidase, putative (NCBI ptt file) | low | > 76 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.43 | GFF292 | | FIG001943: hypothetical protein YajQ | 0.49 | GFF3256 | | Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB | — | — |
| Azospirillum brasilense Sp245 | 0.43 | AZOBR_RS21810 | | nucleotide-binding protein | 0.33 | AZOBR_RS02195 | | coproporphyrinogen III oxidase | low | > 97 |
| Cupriavidus basilensis FW507-4G11 | 0.43 | RR42_RS17155 | | nucleotide-binding protein | 0.52 | RR42_RS04880 | | coproporphyrinogen III oxidase | — | — |
| Ralstonia solanacearum GMI1000 | 0.42 | RS_RS12780 | | nucleotide-binding protein | 0.50 | RS_RS10840 | | oxygen-independent coproporphyrinogen III oxidase-like protein | low | > 80 |
| Ralstonia sp. UNC404CL21Col | 0.42 | ABZR87_RS00820 | | YajQ family cyclic di-GMP-binding protein | 0.50 | ABZR87_RS15265 | | radical SAM family heme chaperone HemW | low | > 80 |
| Magnetospirillum magneticum AMB-1 | 0.42 | AMB_RS18375 | | nucleotide-binding protein | 0.29 | AMB_RS22770 | | radical SAM protein | low | > 64 |
| Ralstonia solanacearum UW163 | 0.42 | UW163_RS08465 | | YajQ family cyclic di-GMP-binding protein | 0.50 | UW163_RS10365 | | oxygen-independent coproporphyrinogen III oxidase-like protein | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.42 | RALBFv3_RS05160 | | YajQ family cyclic di-GMP-binding protein | 0.50 | RALBFv3_RS03355 | | oxygen-independent coproporphyrinogen III oxidase-like protein | low | > 76 |
| Paraburkholderia graminis OAS925 | 0.41 | ABIE53_003357 | | uncharacterized protein YajQ (UPF0234 family) | 0.51 | ABIE53_003236 | | putative oxygen-independent coproporphyrinogen III oxidase | — | — |
| Ralstonia solanacearum PSI07 | 0.41 | RPSI07_RS12140 | | YajQ family cyclic di-GMP-binding protein | 0.51 | RPSI07_RS13830 | | oxygen-independent coproporphyrinogen III oxidase-like protein | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.41 | H281DRAFT_04122 | | hypothetical protein | 0.50 | H281DRAFT_04010 | | oxygen-independent coproporphyrinogen-3 oxidase | — | — |
| Burkholderia phytofirmans PsJN | 0.40 | BPHYT_RS15930 | | nucleotide-binding protein | 0.51 | BPHYT_RS15335 | | coproporphyrinogen III oxidase | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.39 | QEN71_RS02775 | | YajQ family cyclic di-GMP-binding protein | 0.51 | QEN71_RS03635 | | radical SAM family heme chaperone HemW | — | — |
| Mycobacterium tuberculosis H37Rv | 0.39 | Rv0566c | | Conserved protein | 0.23 | Rv2388c | | Probable oxygen-independent coproporphyrinogen III oxidase HemN (coproporphyrinogenase) (coprogen oxidase) | low | > 58 |
| Acinetobacter radioresistens SK82 | 0.38 | MPMX26_02644 | | hypothetical protein | 0.37 | MPMX26_00308 | | Heme chaperone HemW | low | > 36 |
| Dechlorosoma suillum PS | 0.36 | Dsui_3245 | | hypothetical protein | 0.52 | Dsui_0491 | | putative oxygen-independent coproporphyrinogen III oxidase | low | > 51 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.36 | CA265_RS09840 | | YajQ family cyclic di-GMP-binding protein | 0.22 | CA265_RS18155 | | coproporphyrinogen III oxidase | low | > 88 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.36 | ABZR88_RS04840 | | YajQ family cyclic di-GMP-binding protein | 0.25 | ABZR88_RS03545 | | radical SAM family heme chaperone HemW | low | > 71 |
| Synechococcus elongatus PCC 7942 | 0.35 | Synpcc7942_0865 | | nucleotide-binding protein | 0.28 | Synpcc7942_2382 | hemN | coproporphyrinogen III oxidase | low | > 38 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.32 | CA264_15545 | | YajQ family cyclic di-GMP-binding protein | 0.23 | CA264_16765 | | coproporphyrinogen III oxidase | low | > 74 |
Not shown: 2 genomes with orthologs for Xcc-8004.4605.1 only; 17 genomes with orthologs for Xcc-8004.1224.1 only