| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Xanthomonas campestris pv. campestris strain 8004 | 1.0 | Xcc-8004.4046.1 | | ATP-dependent protease La (EC 3.4.21.53) Type I | 1.0 | Xcc-8004.1138.1 | | 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) | 0.69 | 1 |
| Lysobacter sp. OAE881 | 0.82 | ABIE51_RS14145 | | endopeptidase La | 0.54 | ABIE51_RS17355 | | 5-formyltetrahydrofolate cyclo-ligase | low | > 62 |
| Dyella japonica UNC79MFTsu3.2 | 0.74 | ABZR86_RS07320 | | endopeptidase La | 0.32 | ABZR86_RS11995 | | 5-formyltetrahydrofolate cyclo-ligase | 0.66 | 17 |
| Rhodanobacter sp. FW510-T8 | 0.73 | OKGIIK_08030 | lon | endopeptidase La | 0.35 | OKGIIK_12225 | | 5-formyltetrahydrofolate cyclo-ligase | low | > 52 |
| Rhodanobacter denitrificans MT42 | 0.73 | LRK55_RS16460 | | endopeptidase La | 0.35 | LRK55_RS11395 | | 5-formyltetrahydrofolate cyclo-ligase | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.73 | LRK54_RS16735 | | endopeptidase La | 0.35 | LRK54_RS11670 | | 5-formyltetrahydrofolate cyclo-ligase | low | > 59 |
| Shewanella loihica PV-4 | 0.66 | Shew_2506 | | ATP-dependent protease La (RefSeq) | 0.26 | Shew_3069 | | 5-formyltetrahydrofolate cyclo-ligase (RefSeq) | — | — |
| Shewanella sp. ANA-3 | 0.65 | Shewana3_2659 | | Lon-A peptidase (RefSeq) | 0.26 | Shewana3_3506 | | 5-formyltetrahydrofolate cyclo-ligase (RefSeq) | — | — |
| Shewanella amazonensis SB2B | 0.65 | Sama_1226 | | endopeptidase La (RefSeq) | 0.23 | Sama_2726 | | 5-formyltetrahydrofolate cyclo-ligase family protein (RefSeq) | low | > 62 |
| Shewanella oneidensis MR-1 | 0.65 | SO1796 | lon | ATP-dependent protease La (NCBI ptt file) | 0.25 | SO0774 | | 5-formyltetrahydrofolate cyclo-ligase family protein (NCBI ptt file) | low | > 76 |
| Pseudomonas stutzeri RCH2 | 0.65 | Psest_2285 | | ATP-dependent protease La | 0.22 | Psest_0170 | | 5,10-methenyltetrahydrofolate synthetase | low | > 67 |
| Pseudomonas fluorescens FW300-N2C3 | 0.65 | AO356_01740 | | DNA-binding protein | 0.17 | AO356_12990 | | 5-formyltetrahydrofolate cyclo-ligase | low | > 104 |
| Ralstonia solanacearum GMI1000 | 0.65 | RS_RS08655 | | endopeptidase La | 0.21 | RS_RS00450 | | 5-formyltetrahydrofolate cyclo-ligase | — | — |
| Ralstonia solanacearum PSI07 | 0.65 | RPSI07_RS16135 | | endopeptidase La | 0.20 | RPSI07_RS23505 | | 5-formyltetrahydrofolate cyclo-ligase | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.65 | Pf6N2E2_2216 | | ATP-dependent protease La (EC 3.4.21.53) Type I | 0.17 | Pf6N2E2_4476 | | 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.65 | RALBFv3_RS01340 | | endopeptidase La | 0.19 | RALBFv3_RS09865 | | 5-formyltetrahydrofolate cyclo-ligase | — | — |
| Ralstonia solanacearum UW163 | 0.65 | UW163_RS14650 | | endopeptidase La | 0.19 | UW163_RS03715 | | 5-formyltetrahydrofolate cyclo-ligase | — | — |
| Ralstonia sp. UNC404CL21Col | 0.64 | ABZR87_RS12785 | | endopeptidase La | 0.18 | ABZR87_RS04880 | | 5-formyltetrahydrofolate cyclo-ligase | low | > 80 |
| Pseudomonas fluorescens FW300-N2E3 | 0.64 | AO353_20185 | | DNA-binding protein | 0.20 | AO353_08780 | | 5-formyltetrahydrofolate cyclo-ligase | low | > 101 |
| Pseudomonas fluorescens FW300-N1B4 | 0.64 | Pf1N1B4_3947 | | ATP-dependent protease La (EC 3.4.21.53) Type I | 0.21 | Pf1N1B4_2225 | | 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.64 | PfGW456L13_2554 | | ATP-dependent protease La (EC 3.4.21.53) Type I | 0.19 | PfGW456L13_892 | | 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) | low | > 87 |
| Dickeya dadantii 3937 | 0.64 | DDA3937_RS05650 | | endopeptidase La | 0.22 | DDA3937_RS02410 | | 5-formyltetrahydrofolate cyclo-ligase | low | > 74 |
| Pseudomonas sp. RS175 | 0.64 | PFR28_01230 | | Lon protease | 0.16 | PFR28_04325 | | 5-formyltetrahydrofolate cyclo-ligase | low | > 88 |
| Klebsiella michiganensis M5al | 0.64 | BWI76_RS06535 | | endopeptidase La | 0.22 | BWI76_RS23915 | | 5-formyltetrahydrofolate cyclo-ligase | low | > 92 |
| Pseudomonas fluorescens SBW25-INTG | 0.64 | PFLU_RS19160 | | endopeptidase La | 0.19 | PFLU_RS28965 | | 5-formyltetrahydrofolate cyclo-ligase | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.64 | PFLU_RS19160 | | endopeptidase La | 0.19 | PFLU_RS28965 | | 5-formyltetrahydrofolate cyclo-ligase | low | > 109 |
| Dickeya dianthicola 67-19 | 0.64 | HGI48_RS05695 | | endopeptidase La | 0.20 | HGI48_RS02370 | | 5-formyltetrahydrofolate cyclo-ligase | low | > 71 |
| Pseudomonas simiae WCS417 | 0.64 | PS417_17225 | | DNA-binding protein | 0.19 | PS417_27305 | | 5-formyltetrahydrofolate cyclo-ligase | — | — |
| Pectobacterium carotovorum WPP14 | 0.64 | HER17_RS15840 | | endopeptidase La | 0.26 | HER17_RS19095 | | 5-formyltetrahydrofolate cyclo-ligase | — | — |
| Dickeya dianthicola ME23 | 0.64 | DZA65_RS06020 | | endopeptidase La | 0.20 | DZA65_RS02475 | | 5-formyltetrahydrofolate cyclo-ligase | low | > 75 |
| Vibrio cholerae E7946 ATCC 55056 | 0.64 | CSW01_09605 | | endopeptidase La | 0.26 | CSW01_12545 | | 5-formyltetrahydrofolate cyclo-ligase | low | > 62 |
| Pseudomonas syringae pv. syringae B728a | 0.64 | Psyr_1749 | | ATP-dependent proteinase, Serine peptidase, MEROPS family S16 | 0.22 | Psyr_0317 | | 5-formyltetrahydrofolate cyclo-ligase | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.64 | Psyr_1749 | | ATP-dependent proteinase, Serine peptidase, MEROPS family S16 | 0.22 | Psyr_0317 | | 5-formyltetrahydrofolate cyclo-ligase | low | > 86 |
| Dechlorosoma suillum PS | 0.64 | Dsui_2198 | | ATP-dependent protease La | 0.14 | Dsui_0682 | | 5,10-methenyltetrahydrofolate synthetase | — | — |
| Pantoea sp. MT58 | 0.64 | IAI47_14645 | | endopeptidase La | 0.20 | IAI47_03730 | | 5-formyltetrahydrofolate cyclo-ligase | — | — |
| Pseudomonas sp. S08-1 | 0.64 | OH686_03635 | | endopeptidase La | 0.16 | OH686_11225 | | 5-formyltetrahydrofolate cyclo-ligase | low | > 80 |
| Enterobacter sp. TBS_079 | 0.64 | MPMX20_01030 | | Lon protease | 0.23 | MPMX20_03770 | | 5-formyltetrahydrofolate cyclo-ligase | low | > 85 |
| Herbaspirillum seropedicae SmR1 | 0.64 | HSERO_RS12905 | | peptidase | 0.15 | HSERO_RS21420 | | 5-formyltetrahydrofolate cyclo-ligase | — | — |
| Enterobacter asburiae PDN3 | 0.64 | EX28DRAFT_2531 | | endopeptidase La | 0.20 | EX28DRAFT_2964 | | 5,10-methenyltetrahydrofolate synthetase | low | > 76 |
| Escherichia coli ECOR27 | 0.64 | NOLOHH_01255 | lon_P403L | Lon protease | 0.24 | NOLOHH_11395 | ygfA | 5-formyltetrahydrofolate cyclo-ligase | 0.68 | 40 |
| Erwinia tracheiphila SCR3 | 0.64 | LU632_RS18335 | lon | endopeptidase La | 0.21 | LU632_RS05860 | | 5-formyltetrahydrofolate cyclo-ligase | — | — |
| Serratia liquefaciens MT49 | 0.64 | IAI46_05020 | | endopeptidase La | 0.22 | IAI46_20895 | | 5-formyltetrahydrofolate cyclo-ligase | low | > 86 |
| Escherichia coli ECOR38 | 0.64 | HEPCGN_06935 | lon_P403L | Lon protease | 0.24 | HEPCGN_18775 | ygfA | 5-formyltetrahydrofolate cyclo-ligase | low | > 87 |
| Escherichia fergusonii Becca | 0.64 | EFB2_03618 | | Lon protease | 0.24 | EFB2_00991 | | 5-formyltetrahydrofolate cyclo-ligase | low | > 86 |
| Escherichia coli Nissle 1917 | 0.64 | ECOLIN_RS02635 | | endopeptidase La | 0.25 | ECOLIN_RS16205 | | 5-formyltetrahydrofolate cyclo-ligase | low | > 55 |
| Escherichia coli ECRC62 | 0.64 | BNILDI_22670 | lon_P403L | Lon protease | 0.24 | BNILDI_09930 | ygfA | 5-formyltetrahydrofolate cyclo-ligase | low | > 75 |
| Escherichia coli BW25113 | 0.64 | b0439 | lon | DNA-binding ATP-dependent protease La (NCBI) | 0.22 | b2912 | ygfA | putative ligase (VIMSS) | 0.41 | 66 |
| Escherichia coli BL21 | 0.64 | ECD_00391 | | DNA-binding ATP-dependent protease La | 0.22 | ECD_02743 | | 5-formyltetrahydrofolate cyclo-ligase family protein | low | > 61 |
| Pseudomonas putida KT2440 | 0.64 | PP_2302 | | DNA-binding, ATP-dependent protease | 0.17 | PP_5203 | | 5-formyltetrahydrofolate cyclo-ligase | low | > 96 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.64 | GFF4355 | | ATP-dependent protease La (EC 3.4.21.53) Type I | 0.20 | GFF3012 | | 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) | low | > 78 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.64 | OHPLBJKB_03234 | | Lon protease | 0.22 | OHPLBJKB_00804 | | 5-formyltetrahydrofolate cyclo-ligase | 0.60 | 9 |
| Escherichia coli ECRC98 | 0.63 | JDDGAC_11975 | | Lon protease | 0.24 | JDDGAC_23125 | ygfA | 5-formyltetrahydrofolate cyclo-ligase | low | > 86 |
| Escherichia coli ECRC99 | 0.63 | KEDOAH_19645 | | Lon protease | 0.24 | KEDOAH_08655 | ygfA | 5-formyltetrahydrofolate cyclo-ligase | — | — |
| Escherichia coli ECRC102 | 0.63 | NIAGMN_06375 | | Lon protease | 0.24 | NIAGMN_17250 | ygfA | 5-formyltetrahydrofolate cyclo-ligase | — | — |
| Escherichia coli ECRC101 | 0.63 | MCAODC_27545 | | Lon protease | 0.24 | MCAODC_10005 | ygfA | 5-formyltetrahydrofolate cyclo-ligase | low | > 87 |
| Escherichia coli ECRC100 | 0.63 | OKFHMN_08320 | | Lon protease | 0.24 | OKFHMN_19485 | ygfA | 5-formyltetrahydrofolate cyclo-ligase | low | > 80 |
| Marinobacter adhaerens HP15 | 0.63 | HP15_2183 | | DNA-binding ATP-dependent protease La | 0.26 | HP15_3211 | | 5-formyltetrahydrofolate cyclo-ligase | low | > 73 |
| Kangiella aquimarina DSM 16071 | 0.63 | B158DRAFT_1038 | | ATP-dependent protease La | 0.19 | B158DRAFT_0528 | | 5-formyltetrahydrofolate cyclo-ligase | low | > 40 |
| Rahnella sp. WP5 | 0.63 | EX31_RS22255 | | endopeptidase La | 0.24 | EX31_RS21480 | | 5-formyltetrahydrofolate cyclo-ligase | low | > 89 |
| Paraburkholderia sabiae LMG 24235 | 0.63 | QEN71_RS21975 | | endopeptidase La | 0.15 | QEN71_RS28640 | | 5-formyltetrahydrofolate cyclo-ligase | low | > 153 |
| Cupriavidus basilensis FW507-4G11 | 0.63 | RR42_RS09030 | | DNA-binding protein | 0.16 | RR42_RS01400 | | 5-formyltetrahydrofolate cyclo-ligase | — | — |
| Variovorax sp. OAS795 | 0.61 | ABID97_RS17590 | | endopeptidase La | 0.16 | ABID97_RS06600 | | 5-formyltetrahydrofolate cyclo-ligase | low | > 91 |
| Castellaniella sp019104865 MT123 | 0.61 | ABCV34_RS05125 | | endopeptidase La | 0.14 | ABCV34_RS13555 | | 5-formyltetrahydrofolate cyclo-ligase | — | — |
| Paraburkholderia graminis OAS925 | 0.61 | ABIE53_002117 | | ATP-dependent Lon protease | 0.12 | ABIE53_000045 | | 5-formyltetrahydrofolate cyclo-ligase | 0.43 | 78 |
| Caulobacter crescentus NA1000 Δfur | 0.60 | CCNA_02037 | | ATP-dependent endopeptidase Lon | 0.18 | CCNA_03354 | | 5-formyltetrahydrofolate cyclo-ligase | — | — |
| Caulobacter crescentus NA1000 | 0.60 | CCNA_02037 | | ATP-dependent endopeptidase Lon | 0.18 | CCNA_03354 | | 5-formyltetrahydrofolate cyclo-ligase | 0.71 | 15 |
| Agrobacterium fabrum C58 | 0.59 | Atu1261 | | ATP-dependent protease LA | 0.17 | Atu3731 | | 5-formyltetrahydrofolate cyclo-ligase | — | — |
| Rhodopseudomonas palustris CGA009 | 0.59 | TX73_015345 | | endopeptidase La | 0.17 | TX73_023120 | | 5-formyltetrahydrofolate cyclo-ligase | — | — |
| Rhizobium sp. OAE497 | 0.58 | ABIE40_RS07100 | | endopeptidase La | 0.17 | ABIE40_RS15645 | | 5-formyltetrahydrofolate cyclo-ligase | — | — |
| Sinorhizobium meliloti 1021 | 0.58 | SMc01905 | | ATP-dependent protease LA protein | 0.22 | SMc03974 | | hypothetical protein | — | — |
| Bosea sp. OAE506 | 0.58 | ABIE41_RS18050 | | endopeptidase La | 0.17 | ABIE41_RS09445 | | 5-formyltetrahydrofolate cyclo-ligase | — | — |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.57 | A4249_RS06460 | | endopeptidase La | 0.13 | A4249_RS00800 | | 5-formyltetrahydrofolate cyclo-ligase | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.56 | Ga0059261_0102 | | endopeptidase La | 0.17 | Ga0059261_0735 | | 5,10-methenyltetrahydrofolate synthetase | low | > 68 |
| Desulfovibrio vulgaris Miyazaki F | 0.53 | DvMF_0112 | | ATP-dependent protease La (RefSeq) | 0.17 | DvMF_2318 | | 5-formyltetrahydrofolate cyclo-ligase (RefSeq) | low | > 51 |
| Acinetobacter radioresistens SK82 | 0.51 | MPMX26_02299 | | Lon protease | 0.13 | MPMX26_02298 | | 5-formyltetrahydrofolate cyclo-ligase | low | > 36 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.43 | CA264_00045 | | endopeptidase La | 0.13 | CA264_15880 | | 5-formyltetrahydrofolate cyclo-ligase | low | > 74 |
| Bacteroides stercoris CC31F | 0.41 | HMPREF1181_RS14340 | | endopeptidase La | 0.14 | HMPREF1181_RS06170 | | 5-formyltetrahydrofolate cyclo-ligase | low | > 56 |
| Parabacteroides merdae CL09T00C40 | 0.40 | HMPREF1078_RS16185 | | endopeptidase La | 0.15 | HMPREF1078_RS14635 | | 5-formyltetrahydrofolate cyclo-ligase | low | > 61 |
| Phocaeicola vulgatus CL09T03C04 | 0.39 | HMPREF1058_RS01210 | | endopeptidase La | 0.16 | HMPREF1058_RS17145 | | 5-formyltetrahydrofolate cyclo-ligase | low | > 67 |
| Phocaeicola dorei CL03T12C01 | 0.39 | ABI39_RS16520 | | endopeptidase La | 0.16 | ABI39_RS13145 | | 5-formyltetrahydrofolate cyclo-ligase | low | > 72 |
Not shown: 18 genomes with orthologs for Xcc-8004.4046.1 only; 2 genomes with orthologs for Xcc-8004.1138.1 only