Conservation of cofitness between Xcc-8004.5020.1 and Xcc-8004.1010.1 in Xanthomonas campestris pv. campestris strain 8004

80 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Xanthomonas campestris pv. campestris strain 8004 1.0 Xcc-8004.5020.1 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 1.0 Xcc-8004.1010.1 Aspartate aminotransferase (EC 2.6.1.1) 0.90 7
Lysobacter sp. OAE881 0.57 ABIE51_RS01815 shikimate dehydrogenase 0.73 ABIE51_RS18840 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme low > 62
Dyella japonica UNC79MFTsu3.2 0.51 ABZR86_RS14985 shikimate dehydrogenase 0.56 ABZR86_RS12435 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme low > 74
Rhodanobacter denitrificans FW104-10B01 0.49 LRK54_RS08595 shikimate dehydrogenase 0.54 LRK54_RS11155 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme low > 59
Rhodanobacter denitrificans MT42 0.49 LRK55_RS08360 shikimate dehydrogenase 0.54 LRK55_RS10860 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme low > 63
Rhodanobacter sp. FW510-T8 0.46 OKGIIK_15365 aroE shikimate dehydrogenase 0.55 OKGIIK_12720 aspB aminotransferase low > 52
Shewanella oneidensis MR-1 0.40 SO0040 aroE shikimate 5-dehydrogenase (NCBI ptt file) 0.40 SO2483 aspartate aminotransferase, putative (NCBI ptt file) low > 76
Pseudomonas fluorescens SBW25-INTG 0.39 PFLU_RS00120 shikimate dehydrogenase 0.37 PFLU_RS08510 pyridoxal phosphate-dependent aminotransferase — —
Pseudomonas fluorescens SBW25 0.39 PFLU_RS00120 shikimate dehydrogenase 0.37 PFLU_RS08510 pyridoxal phosphate-dependent aminotransferase — —
Pseudomonas simiae WCS417 0.39 PS417_00125 shikimate dehydrogenase 0.38 PS417_08560 aminotransferase — —
Pseudomonas sp. RS175 0.39 PFR28_04655 Shikimate dehydrogenase (NADP(+)) 0.38 PFR28_00984 Glutamate-pyruvate aminotransferase AlaA — —
Serratia liquefaciens MT49 0.39 IAI46_23240 shikimate dehydrogenase 0.40 IAI46_17720 pyridoxal phosphate-dependent aminotransferase low > 86
Pseudomonas fluorescens FW300-N2E3 0.38 AO353_10670 shikimate dehydrogenase 0.38 AO353_19150 aminotransferase low > 101
Vibrio cholerae E7946 ATCC 55056 0.38 CSW01_00280 shikimate dehydrogenase 0.40 CSW01_09870 pyridoxal phosphate-dependent aminotransferase low > 62
Shewanella sp. ANA-3 0.38 Shewana3_0043 aroE shikimate 5-dehydrogenase (RefSeq) 0.40 Shewana3_2145 aminotransferase AlaT (RefSeq) low > 73
Shewanella loihica PV-4 0.38 Shew_3727 shikimate 5-dehydrogenase (RefSeq) 0.40 Shew_1914 aminotransferase AlaT (RefSeq) low > 60
Pseudomonas fluorescens FW300-N2C3 0.38 AO356_11315 shikimate dehydrogenase 0.38 AO356_03090 aminotransferase low > 104
Pseudomonas fluorescens FW300-N1B4 0.38 Pf1N1B4_1906 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.38 Pf1N1B4_261 Aspartate aminotransferase (EC 2.6.1.1) low > 87
Dechlorosoma suillum PS 0.38 Dsui_0443 shikimate 5-dehydrogenase 0.40 Dsui_2908 aspartate/tyrosine/aromatic aminotransferase — —
Pseudomonas fluorescens GW456-L13 0.38 PfGW456L13_644 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.38 PfGW456L13_2252 Aspartate aminotransferase (EC 2.6.1.1) low > 87
Pseudomonas fluorescens FW300-N2E2 0.38 Pf6N2E2_4130 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.38 Pf6N2E2_2446 Aspartate aminotransferase (EC 2.6.1.1) — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.37 Psyr_0025 shikimate dehydrogenase 0.38 Psyr_3615 Aminotransferase, class I and II low > 86
Pseudomonas syringae pv. syringae B728a 0.37 Psyr_0025 shikimate dehydrogenase 0.38 Psyr_3615 Aminotransferase, class I and II 0.49 61
Rahnella sp. WP5 0.37 EX31_RS15950 shikimate dehydrogenase 0.37 EX31_RS19445 pyridoxal phosphate-dependent aminotransferase — —
Herbaspirillum seropedicae SmR1 0.37 HSERO_RS01990 shikimate 5-dehydrogenase 0.41 HSERO_RS10455 aminotransferase 0.69 29
Pseudomonas sp. S08-1 0.37 OH686_12485 Shikimate 5-dehydrogenase I alpha 0.39 OH686_22575 Alanine transaminase low > 80
Pseudomonas putida KT2440 0.37 PP_0074 shikimate 5-dehydrogenase 0.37 PP_1872 glutamate-pyruvate aminotransferase — —
Pantoea sp. MT58 0.37 IAI47_02315 shikimate dehydrogenase 0.40 IAI47_06350 pyridoxal phosphate-dependent aminotransferase — —
Dickeya dadantii 3937 0.36 DDA3937_RS19100 shikimate dehydrogenase 0.40 DDA3937_RS14345 pyridoxal phosphate-dependent aminotransferase — —
Ralstonia solanacearum PSI07 0.36 RPSI07_RS11300 shikimate dehydrogenase 0.38 RPSI07_RS17495 pyridoxal phosphate-dependent aminotransferase low > 81
Shewanella amazonensis SB2B 0.36 Sama_0052 shikimate dehydrogenase (RefSeq) 0.39 Sama_1697 aminotransferase AlaT (RefSeq) low > 62
Klebsiella michiganensis M5al 0.36 BWI76_RS25645 shikimate dehydrogenase 0.40 BWI76_RS20205 aminotransferase AlaT low > 92
Escherichia coli BW25113 0.36 b3281 aroE dehydroshikimate reductase, NAD(P)-binding (NCBI) 0.40 b2290 yfbQ aspartate aminotransferase (NCBI) low > 76
Paraburkholderia sabiae LMG 24235 0.36 QEN71_RS27130 shikimate dehydrogenase 0.36 QEN71_RS22410 pyridoxal phosphate-dependent aminotransferase 0.68 53
Dickeya dianthicola 67-19 0.36 HGI48_RS19190 shikimate dehydrogenase 0.40 HGI48_RS14320 pyridoxal phosphate-dependent aminotransferase — —
Escherichia coli BL21 0.36 ECD_03132 dehydroshikimate reductase, NAD(P)-binding 0.40 ECD_02215 glutamate-pyruvate aminotransferase; glutamic-pyruvic transaminase (GPT); alanine transaminase low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.36 OHPLBJKB_00422 Shikimate dehydrogenase (NADP(+)) 0.40 OHPLBJKB_01415 Glutamate-pyruvate aminotransferase AlaA low > 73
Escherichia fergusonii Becca 0.36 EFB2_00542 Shikimate dehydrogenase (NADP(+)) 0.40 EFB2_01568 Glutamate-pyruvate aminotransferase AlaA low > 86
Escherichia coli ECOR38 0.36 HEPCGN_16385 aroE shikimate dehydrogenase 0.40 HEPCGN_22030 alaA alanine transaminase AlaA low > 87
Paraburkholderia bryophila 376MFSha3.1 0.36 H281DRAFT_06291 shikimate dehydrogenase (EC 1.1.1.25) 0.35 H281DRAFT_00809 alanine-synthesizing transaminase — —
Acinetobacter radioresistens SK82 0.36 MPMX26_02748 Shikimate dehydrogenase (NADP(+)) 0.41 MPMX26_01871 Glutamate-pyruvate aminotransferase AlaA low > 36
Escherichia coli ECRC102 0.36 NIAGMN_15325 aroE shikimate dehydrogenase 0.40 NIAGMN_20595 alaA alanine transaminase AlaA — —
Escherichia coli ECRC100 0.36 OKFHMN_17565 aroE shikimate dehydrogenase 0.40 OKFHMN_22825 alaA alanine transaminase AlaA low > 80
Escherichia coli ECRC99 0.36 KEDOAH_10585 aroE shikimate dehydrogenase 0.40 KEDOAH_05370 alaA alanine transaminase AlaA — —
Dickeya dianthicola ME23 0.36 DZA65_RS20315 shikimate dehydrogenase 0.40 DZA65_RS14995 pyridoxal phosphate-dependent aminotransferase — —
Ralstonia solanacearum IBSBF1503 0.36 RALBFv3_RS05945 shikimate dehydrogenase 0.38 RALBFv3_RS15870 pyridoxal phosphate-dependent aminotransferase low > 76
Ralstonia solanacearum UW163 0.36 UW163_RS07680 shikimate dehydrogenase 0.38 UW163_RS13315 pyridoxal phosphate-dependent aminotransferase — —
Escherichia coli ECRC101 0.36 MCAODC_08085 aroE shikimate dehydrogenase 0.40 MCAODC_13865 alaA alanine transaminase AlaA low > 87
Escherichia coli ECRC98 0.36 JDDGAC_21185 aroE shikimate dehydrogenase 0.40 JDDGAC_26790 alaA alanine transaminase AlaA low > 86
Escherichia coli Nissle 1917 0.36 ECOLIN_RS18840 shikimate dehydrogenase 0.40 ECOLIN_RS13295 alanine transaminase AlaA low > 55
Ralstonia sp. UNC404CL21Col 0.36 ABZR87_RS01605 shikimate dehydrogenase 0.38 ABZR87_RS11440 pyridoxal phosphate-dependent aminotransferase 0.63 20
Ralstonia solanacearum GMI1000 0.35 RS_RS13890 shikimate dehydrogenase 0.38 RS_RS06650 pyridoxal phosphate-dependent aminotransferase 0.51 23
Enterobacter asburiae PDN3 0.35 EX28DRAFT_0046 shikimate dehydrogenase 0.39 EX28DRAFT_0319 Aspartate/tyrosine/aromatic aminotransferase low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.35 GFF2397 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.40 GFF1894 Aspartate aminotransferase (EC 2.6.1.1) low > 78
Pectobacterium carotovorum WPP14 0.35 HER17_RS02250 shikimate dehydrogenase 0.40 HER17_RS07115 pyridoxal phosphate-dependent aminotransferase low > 75
Escherichia coli ECOR27 0.35 NOLOHH_09355 aroE shikimate dehydrogenase 0.40 NOLOHH_14445 alaA alanine transaminase AlaA low > 75
Escherichia coli ECRC62 0.35 BNILDI_02165 aroE shikimate dehydrogenase 0.40 BNILDI_13365 alaA alanine transaminase AlaA low > 75
Pseudomonas stutzeri RCH2 0.35 Psest_0029 shikimate 5-dehydrogenase 0.38 Psest_1772 Aspartate/tyrosine/aromatic aminotransferase — —
Enterobacter sp. TBS_079 0.35 MPMX20_04189 Shikimate dehydrogenase (NADP(+)) 0.40 MPMX20_03220 Glutamate-pyruvate aminotransferase AlaA low > 85
Paraburkholderia graminis OAS925 0.35 ABIE53_003560 shikimate dehydrogenase 0.35 ABIE53_002025 alanine-synthesizing transaminase — —
Burkholderia phytofirmans PsJN 0.34 BPHYT_RS16975 shikimate 5-dehydrogenase 0.35 BPHYT_RS08950 aminotransferase 0.74 11
Erwinia tracheiphila SCR3 0.34 LU632_RS22445 aroE shikimate dehydrogenase 0.39 LU632_RS07955 pyridoxal phosphate-dependent aminotransferase 0.58 23
Marinobacter adhaerens HP15 0.34 HP15_3750 shikimate dehydrogenase 0.43 HP15_2095 aspartate aminotransferase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.34 GFF5226 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.38 GFF3934 Aspartate aminotransferase (EC 2.6.1.1) 0.43 89
Cupriavidus basilensis FW507-4G11 0.30 RR42_RS17645 shikimate dehydrogenase 0.39 RR42_RS12545 aminotransferase 0.43 81
Acidovorax sp. GW101-3H11 0.29 Ac3H11_4044 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.38 Ac3H11_1508 Aspartate aminotransferase (EC 2.6.1.1) low > 79
Alteromonas macleodii MIT1002 0.26 MIT1002_00029 Shikimate dehydrogenase 0.39 MIT1002_02306 Glutamate-pyruvate aminotransferase AlaA — —
Variovorax sp. OAS795 0.25 ABID97_RS06300 shikimate dehydrogenase 0.38 ABID97_RS10885 pyridoxal phosphate-dependent aminotransferase — —
Variovorax sp. SCN45 0.25 GFF4456 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.39 GFF2803 Alanine transaminase (EC 2.6.1.2) low > 127
Agrobacterium fabrum C58 0.24 Atu0003 shikimate 5-dehydrogenase 0.21 Atu2196 aspartate aminotransferase A — —
Sinorhizobium meliloti 1021 0.23 SMc02791 shikimate 5-dehydrogenase 0.20 SMc01578 aspartate aminotransferase — —
Rhodopseudomonas palustris CGA009 0.22 TX73_022410 shikimate dehydrogenase 0.20 TX73_022440 pyridoxal phosphate-dependent aminotransferase — —
Azospirillum sp. SherDot2 0.22 MPMX19_02560 Shikimate dehydrogenase (NADP(+)) 0.20 MPMX19_02392 Aspartate/prephenate aminotransferase — —
Rhizobium sp. OAE497 0.22 ABIE40_RS19250 shikimate dehydrogenase 0.20 ABIE40_RS12925 pyridoxal phosphate-dependent aminotransferase — —
Caulobacter crescentus NA1000 0.19 CCNA_00003 shikimate dehydrogenase (EC 1.1.1.25) (from data) 0.20 CCNA_01603 aspartate aminotransferase 0.89 25
Caulobacter crescentus NA1000 Δfur 0.19 CCNA_00003 shikimate 5-dehydrogenase 0.20 CCNA_01603 aspartate aminotransferase 0.53 42
Brevundimonas sp. GW460-12-10-14-LB2 0.18 A4249_RS13660 shikimate dehydrogenase 0.21 A4249_RS04680 pyridoxal phosphate-dependent aminotransferase — —
Fusobacterium nucleatum SB010 0.18 HUW76_10445 shikimate dehydrogenase 0.15 HUW76_05840 pyridoxal phosphate-dependent aminotransferase 0.79 23
Azospirillum brasilense Sp245 0.17 AZOBR_RS01765 shikimate 5-dehydrogenase 0.21 AZOBR_RS12970 aspartate aminotransferase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.13 Echvi_1145 Shikimate 5-dehydrogenase 0.17 Echvi_0032 Aspartate/tyrosine/aromatic aminotransferase — —
Mycobacterium tuberculosis H37Rv 0.12 Rv2552c Probable shikimate 5-dehydrogenase AroE (5-dehydroshikimate reductase) 0.39 Rv0337c Probable aspartate aminotransferase AspC (transaminase A) (ASPAT) — —

Not shown: 14 genomes with orthologs for Xcc-8004.5020.1 only; 2 genomes with orthologs for Xcc-8004.1010.1 only