| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Xanthomonas campestris pv. campestris strain 8004 | 1.0 | Xcc-8004.4620.1 | | Alanine racemase (EC 5.1.1.1) | 1.0 | Xcc-8004.1010.1 | | Aspartate aminotransferase (EC 2.6.1.1) | 0.66 | 10 |
| Rhodanobacter denitrificans MT42 | 0.67 | LRK55_RS00355 | | alanine racemase | 0.54 | LRK55_RS10860 | | aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.67 | LRK54_RS00585 | | alanine racemase | 0.54 | LRK54_RS11155 | | aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme | — | — |
| Rhodanobacter sp. FW510-T8 | 0.67 | OKGIIK_06670 | alr | alanine racemase | 0.55 | OKGIIK_12720 | aspB | aminotransferase | — | — |
| Pseudomonas sp. S08-1 | 0.65 | OH686_13695 | | alanine racemase | 0.39 | OH686_22575 | | Alanine transaminase | low | > 80 |
| Pseudomonas putida KT2440 | 0.64 | PP_5269 | | alanine racemase, PLP-binding | 0.37 | PP_1872 | | glutamate-pyruvate aminotransferase | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.62 | PfGW456L13_814 | | Alanine racemase (EC 5.1.1.1) | 0.38 | PfGW456L13_2252 | | Aspartate aminotransferase (EC 2.6.1.1) | — | — |
| Pseudomonas simiae WCS417 | 0.62 | PS417_27695 | | alanine racemase | 0.38 | PS417_08560 | | aminotransferase | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.62 | PFLU_RS29370 | | alanine racemase | 0.37 | PFLU_RS08510 | | pyridoxal phosphate-dependent aminotransferase | — | — |
| Pseudomonas fluorescens SBW25 | 0.62 | PFLU_RS29370 | | alanine racemase | 0.37 | PFLU_RS08510 | | pyridoxal phosphate-dependent aminotransferase | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.62 | Psyr_0237 | | alanine racemase | 0.38 | Psyr_3615 | | Aminotransferase, class I and II | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.62 | Psyr_0237 | | alanine racemase | 0.38 | Psyr_3615 | | Aminotransferase, class I and II | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.62 | Pf1N1B4_2146 | | Alanine racemase (EC 5.1.1.1) | 0.38 | Pf1N1B4_261 | | Aspartate aminotransferase (EC 2.6.1.1) | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.62 | AO353_09145 | | alanine racemase | 0.38 | AO353_19150 | | aminotransferase | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.62 | AO356_12630 | | alanine racemase | 0.38 | AO356_03090 | | aminotransferase | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.61 | Pf6N2E2_4393 | | Alanine racemase (EC 5.1.1.1) | 0.38 | Pf6N2E2_2446 | | Aspartate aminotransferase (EC 2.6.1.1) | — | — |
| Pseudomonas sp. RS175 | 0.61 | PFR28_04397 | | Alanine racemase | 0.38 | PFR28_00984 | | Glutamate-pyruvate aminotransferase AlaA | — | — |
| Pseudomonas stutzeri RCH2 | 0.41 | Psest_0699 | | alanine racemase | 0.38 | Psest_1772 | | Aspartate/tyrosine/aromatic aminotransferase | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.40 | GFF1422 | | Alanine racemase (EC 5.1.1.1) | 0.40 | GFF1894 | | Aspartate aminotransferase (EC 2.6.1.1) | low | > 78 |
| Klebsiella michiganensis M5al | 0.40 | BWI76_RS01920 | | alanine racemase | 0.40 | BWI76_RS20205 | | aminotransferase AlaT | low | > 92 |
| Escherichia coli Nissle 1917 | 0.40 | ECOLIN_RS23405 | | alanine racemase | 0.40 | ECOLIN_RS13295 | | alanine transaminase AlaA | low | > 55 |
| Escherichia coli ECOR27 | 0.40 | NOLOHH_05175 | alr | alanine racemase | 0.40 | NOLOHH_14445 | alaA | alanine transaminase AlaA | 0.93 | 1 |
| Escherichia coli ECRC62 | 0.40 | BNILDI_06350 | alr | alanine racemase | 0.40 | BNILDI_13365 | alaA | alanine transaminase AlaA | low | > 75 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.40 | OHPLBJKB_03990 | | Alanine racemase, biosynthetic | 0.40 | OHPLBJKB_01415 | | Glutamate-pyruvate aminotransferase AlaA | low | > 73 |
| Escherichia coli ECOR38 | 0.40 | HEPCGN_11540 | alr | alanine racemase | 0.40 | HEPCGN_22030 | alaA | alanine transaminase AlaA | 0.78 | 2 |
| Escherichia coli BL21 | 0.40 | ECD_03925 | | alanine racemase, biosynthetic, PLP-binding | 0.40 | ECD_02215 | | glutamate-pyruvate aminotransferase; glutamic-pyruvic transaminase (GPT); alanine transaminase | low | > 61 |
| Escherichia fergusonii Becca | 0.40 | EFB2_04547 | | Alanine racemase, biosynthetic | 0.40 | EFB2_01568 | | Glutamate-pyruvate aminotransferase AlaA | low | > 86 |
| Escherichia coli BW25113 | 0.40 | b4053 | alr | alanine racemase (NCBI) | 0.40 | b2290 | yfbQ | aspartate aminotransferase (NCBI) | low | > 76 |
| Enterobacter sp. TBS_079 | 0.40 | MPMX20_02698 | | Alanine racemase, catabolic | 0.40 | MPMX20_03220 | | Glutamate-pyruvate aminotransferase AlaA | low | > 85 |
| Escherichia coli ECRC98 | 0.40 | JDDGAC_16560 | alr | alanine racemase | 0.40 | JDDGAC_26790 | alaA | alanine transaminase AlaA | low | > 86 |
| Escherichia coli ECRC102 | 0.40 | NIAGMN_10770 | alr | alanine racemase | 0.40 | NIAGMN_20595 | alaA | alanine transaminase AlaA | — | — |
| Escherichia coli ECRC100 | 0.40 | OKFHMN_12925 | alr | alanine racemase | 0.40 | OKFHMN_22825 | alaA | alanine transaminase AlaA | low | > 80 |
| Escherichia coli ECRC101 | 0.40 | MCAODC_03435 | alr | alanine racemase | 0.40 | MCAODC_13865 | alaA | alanine transaminase AlaA | low | > 87 |
| Escherichia coli ECRC99 | 0.40 | KEDOAH_15225 | alr | alanine racemase | 0.40 | KEDOAH_05370 | alaA | alanine transaminase AlaA | — | — |
| Dickeya dadantii 3937 | 0.39 | DDA3937_RS17510 | | alanine racemase | 0.40 | DDA3937_RS14345 | | pyridoxal phosphate-dependent aminotransferase | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.39 | CSW01_01955 | | alanine racemase | 0.40 | CSW01_09870 | | pyridoxal phosphate-dependent aminotransferase | — | — |
| Erwinia tracheiphila SCR3 | 0.39 | LU632_RS13065 | dadX | catabolic alanine racemase DadX | 0.39 | LU632_RS07955 | | pyridoxal phosphate-dependent aminotransferase | — | — |
| Herbaspirillum seropedicae SmR1 | 0.39 | HSERO_RS10740 | | alanine racemase | 0.41 | HSERO_RS10455 | | aminotransferase | — | — |
| Enterobacter asburiae PDN3 | 0.39 | EX28DRAFT_4259 | | alanine racemase | 0.39 | EX28DRAFT_0319 | | Aspartate/tyrosine/aromatic aminotransferase | low | > 76 |
| Pantoea sp. MT58 | 0.39 | IAI47_08895 | | catabolic alanine racemase DadX | 0.40 | IAI47_06350 | | pyridoxal phosphate-dependent aminotransferase | — | — |
| Dickeya dianthicola 67-19 | 0.39 | HGI48_RS17565 | | alanine racemase | 0.40 | HGI48_RS14320 | | pyridoxal phosphate-dependent aminotransferase | low | > 71 |
| Pectobacterium carotovorum WPP14 | 0.39 | HER17_RS03655 | | alanine racemase | 0.40 | HER17_RS07115 | | pyridoxal phosphate-dependent aminotransferase | low | > 75 |
| Dickeya dianthicola ME23 | 0.39 | DZA65_RS18650 | | alanine racemase | 0.40 | DZA65_RS14995 | | pyridoxal phosphate-dependent aminotransferase | low | > 75 |
| Ralstonia solanacearum GMI1000 | 0.39 | RS_RS06875 | | alanine racemase | 0.38 | RS_RS06650 | | pyridoxal phosphate-dependent aminotransferase | — | — |
| Rahnella sp. WP5 | 0.39 | EX31_RS11885 | | alanine racemase | 0.37 | EX31_RS19445 | | pyridoxal phosphate-dependent aminotransferase | low | > 89 |
| Serratia liquefaciens MT49 | 0.38 | IAI46_22945 | | alanine racemase | 0.40 | IAI46_17720 | | pyridoxal phosphate-dependent aminotransferase | low | > 86 |
| Ralstonia sp. UNC404CL21Col | 0.38 | ABZR87_RS11665 | | alanine racemase | 0.38 | ABZR87_RS11440 | | pyridoxal phosphate-dependent aminotransferase | — | — |
| Shewanella amazonensis SB2B | 0.38 | Sama_3057 | alr | alanine racemase (RefSeq) | 0.39 | Sama_1697 | | aminotransferase AlaT (RefSeq) | — | — |
| Ralstonia solanacearum PSI07 | 0.38 | RPSI07_RS17275 | | alanine racemase | 0.38 | RPSI07_RS17495 | | pyridoxal phosphate-dependent aminotransferase | — | — |
| Shewanella oneidensis MR-1 | 0.38 | SO3916 | alr | alanine racemase, biosynthetic (NCBI ptt file) | 0.40 | SO2483 | | aspartate aminotransferase, putative (NCBI ptt file) | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.37 | RALBFv3_RS00205 | | alanine racemase | 0.38 | RALBFv3_RS15870 | | pyridoxal phosphate-dependent aminotransferase | — | — |
| Shewanella sp. ANA-3 | 0.37 | Shewana3_0714 | alr | alanine racemase (RefSeq) | 0.40 | Shewana3_2145 | | aminotransferase AlaT (RefSeq) | — | — |
| Ralstonia solanacearum UW163 | 0.37 | UW163_RS13535 | | alanine racemase | 0.38 | UW163_RS13315 | | pyridoxal phosphate-dependent aminotransferase | — | — |
| Dechlorosoma suillum PS | 0.37 | Dsui_2411 | | alanine racemase | 0.40 | Dsui_2908 | | aspartate/tyrosine/aromatic aminotransferase | — | — |
| Shewanella loihica PV-4 | 0.37 | Shew_3277 | alr | alanine racemase (RefSeq) | 0.40 | Shew_1914 | | aminotransferase AlaT (RefSeq) | — | — |
| Paraburkholderia graminis OAS925 | 0.37 | ABIE53_002527 | | alanine racemase | 0.35 | ABIE53_002025 | | alanine-synthesizing transaminase | — | — |
| Alteromonas macleodii MIT1002 | 0.37 | MIT1002_00544 | | Alanine racemase | 0.39 | MIT1002_02306 | | Glutamate-pyruvate aminotransferase AlaA | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.37 | H281DRAFT_00589 | | alanine racemase | 0.35 | H281DRAFT_00809 | | alanine-synthesizing transaminase | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.37 | GFF1915 | | Alanine racemase (EC 5.1.1.1) | 0.38 | GFF3934 | | Aspartate aminotransferase (EC 2.6.1.1) | — | — |
| Variovorax sp. SCN45 | 0.36 | GFF5109 | | Alanine racemase (EC 5.1.1.1) | 0.39 | GFF2803 | | Alanine transaminase (EC 2.6.1.2) | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.36 | QEN71_RS06315 | | alanine racemase | 0.36 | QEN71_RS22410 | | pyridoxal phosphate-dependent aminotransferase | — | — |
| Variovorax sp. OAS795 | 0.35 | ABID97_RS03685 | | alanine racemase | 0.38 | ABID97_RS10885 | | pyridoxal phosphate-dependent aminotransferase | — | — |
| Burkholderia phytofirmans PsJN | 0.35 | BPHYT_RS12240 | | alanine racemase | 0.35 | BPHYT_RS08950 | | aminotransferase | — | — |
| Acidovorax sp. GW101-3H11 | 0.35 | Ac3H11_3382 | | Alanine racemase, catabolic (EC 5.1.1.1) | 0.38 | Ac3H11_1508 | | Aspartate aminotransferase (EC 2.6.1.1) | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.35 | RR42_RS12035 | | alanine racemase | 0.39 | RR42_RS12545 | | aminotransferase | — | — |
| Marinobacter adhaerens HP15 | 0.33 | HP15_630 | | alanine racemase | 0.43 | HP15_2095 | | aspartate aminotransferase | — | — |
| Acinetobacter radioresistens SK82 | 0.31 | MPMX26_01153 | | Alanine racemase | 0.41 | MPMX26_01871 | | Glutamate-pyruvate aminotransferase AlaA | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.31 | ABZR86_RS08850 | | alanine racemase | 0.56 | ABZR86_RS12435 | | aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme | — | — |
| Lysobacter sp. OAE881 | 0.25 | ABIE51_RS09255 | | alanine racemase | 0.73 | ABIE51_RS18840 | | aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme | — | — |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.23 | A4249_RS03755 | | alanine racemase | 0.21 | A4249_RS04680 | | pyridoxal phosphate-dependent aminotransferase | — | — |
| Caulobacter crescentus NA1000 | 0.23 | CCNA_01733 | | alanine racemase | 0.20 | CCNA_01603 | | aspartate aminotransferase | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.23 | CCNA_01733 | | alanine racemase | 0.20 | CCNA_01603 | | aspartate aminotransferase | low | > 67 |
| Azospirillum sp. SherDot2 | 0.22 | MPMX19_06140 | | Alanine racemase, biosynthetic | 0.20 | MPMX19_02392 | | Aspartate/prephenate aminotransferase | — | — |
| Rhodopseudomonas palustris CGA009 | 0.21 | TX73_015960 | | alanine racemase | 0.20 | TX73_022440 | | pyridoxal phosphate-dependent aminotransferase | — | — |
| Agrobacterium fabrum C58 | 0.21 | Atu3292 | | alanine racemase | 0.21 | Atu2196 | | aspartate aminotransferase A | — | — |
| Azospirillum brasilense Sp245 | 0.20 | AZOBR_RS08350 | | alanine racemase | 0.21 | AZOBR_RS12970 | | aspartate aminotransferase | — | — |
| Sinorhizobium meliloti 1021 | 0.18 | SMc00557 | | alanine racemase | 0.20 | SMc01578 | | aspartate aminotransferase | low | > 103 |
| Rhizobium sp. OAE497 | 0.18 | ABIE40_RS06295 | | alanine racemase | 0.20 | ABIE40_RS12925 | | pyridoxal phosphate-dependent aminotransferase | low | > 107 |
| Fusobacterium nucleatum SB010 | 0.16 | HUW76_08815 | | alanine racemase | 0.15 | HUW76_05840 | | pyridoxal phosphate-dependent aminotransferase | low | > 35 |
| Bifidobacterium breve UCC2003 | 0.14 | BBR_RS13170 | | alanine racemase | 0.38 | BBR_RS15560 | | aminotransferase class V-fold PLP-dependent enzyme | — | — |
Not shown: 13 genomes with orthologs for Xcc-8004.4620.1 only; 3 genomes with orthologs for Xcc-8004.1010.1 only