Conservation of cofitness between Xcc-8004.1710.1 and Xcc-8004.1010.1 in Xanthomonas campestris pv. campestris strain 8004

80 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Xanthomonas campestris pv. campestris strain 8004 1.0 Xcc-8004.1710.1 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) 1.0 Xcc-8004.1010.1 Aspartate aminotransferase (EC 2.6.1.1) 0.63 12
Lysobacter sp. OAE881 0.59 ABIE51_RS16065 pyrroline-5-carboxylate reductase 0.73 ABIE51_RS18840 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme low > 62
Dyella japonica UNC79MFTsu3.2 0.49 ABZR86_RS10425 pyrroline-5-carboxylate reductase 0.56 ABZR86_RS12435 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme low > 74
Rhodanobacter sp. FW510-T8 0.47 OKGIIK_11135 proC pyrroline-5-carboxylate reductase 0.55 OKGIIK_12720 aspB aminotransferase low > 52
Pseudomonas sp. S08-1 0.46 OH686_10980 pyrroline-5-carboxylate reductase 0.39 OH686_22575 Alanine transaminase low > 80
Rhodanobacter denitrificans FW104-10B01 0.45 LRK54_RS04260 pyrroline-5-carboxylate reductase 0.54 LRK54_RS11155 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme low > 59
Rhodanobacter denitrificans MT42 0.45 LRK55_RS04030 pyrroline-5-carboxylate reductase 0.54 LRK55_RS10860 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme — —
Pseudomonas stutzeri RCH2 0.44 Psest_0283 pyrroline-5-carboxylate reductase 0.38 Psest_1772 Aspartate/tyrosine/aromatic aminotransferase — —
Pseudomonas putida KT2440 0.43 PP_5095 pyrroline-5-carboxylate reductase 0.37 PP_1872 glutamate-pyruvate aminotransferase low > 96
Pseudomonas fluorescens FW300-N2E2 0.43 Pf6N2E2_4600 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) 0.38 Pf6N2E2_2446 Aspartate aminotransferase (EC 2.6.1.1) — —
Pseudomonas fluorescens FW300-N2C3 0.42 AO356_13420 pyrroline-5-carboxylate reductase 0.38 AO356_03090 aminotransferase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.41 Psyr_0476 pyrroline-5-carboxylate reductase 0.38 Psyr_3615 Aminotransferase, class I and II 0.60 75
Pseudomonas sp. RS175 0.41 PFR28_04243 Pyrroline-5-carboxylate reductase 0.38 PFR28_00984 Glutamate-pyruvate aminotransferase AlaA — —
Pseudomonas syringae pv. syringae B728a 0.41 Psyr_0476 pyrroline-5-carboxylate reductase 0.38 Psyr_3615 Aminotransferase, class I and II — —
Pseudomonas fluorescens FW300-N1B4 0.41 Pf1N1B4_2341 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) 0.38 Pf1N1B4_261 Aspartate aminotransferase (EC 2.6.1.1) — —
Pseudomonas fluorescens FW300-N2E3 0.41 AO353_08165 pyrroline-5-carboxylate reductase 0.38 AO353_19150 aminotransferase low > 101
Pseudomonas fluorescens SBW25 0.41 PFLU_RS28375 pyrroline-5-carboxylate reductase 0.37 PFLU_RS08510 pyridoxal phosphate-dependent aminotransferase — —
Pseudomonas fluorescens SBW25-INTG 0.41 PFLU_RS28375 pyrroline-5-carboxylate reductase 0.37 PFLU_RS08510 pyridoxal phosphate-dependent aminotransferase — —
Pseudomonas simiae WCS417 0.41 PS417_26730 pyrroline-5-carboxylate reductase 0.38 PS417_08560 aminotransferase low > 88
Pseudomonas fluorescens GW456-L13 0.40 PfGW456L13_1010 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) 0.38 PfGW456L13_2252 Aspartate aminotransferase (EC 2.6.1.1) low > 87
Marinobacter adhaerens HP15 0.37 HP15_287 pyrroline-5-carboxylate reductase 0.43 HP15_2095 aspartate aminotransferase low > 73
Dechlorosoma suillum PS 0.36 Dsui_0602 pyrroline-5-carboxylate reductase 0.40 Dsui_2908 aspartate/tyrosine/aromatic aminotransferase — —
Variovorax sp. OAS795 0.35 ABID97_RS01555 pyrroline-5-carboxylate reductase 0.38 ABID97_RS10885 pyridoxal phosphate-dependent aminotransferase — —
Paraburkholderia sabiae LMG 24235 0.35 QEN71_RS26600 pyrroline-5-carboxylate reductase 0.36 QEN71_RS22410 pyridoxal phosphate-dependent aminotransferase 0.87 39
Ralstonia sp. UNC404CL21Col 0.34 ABZR87_RS01230 pyrroline-5-carboxylate reductase 0.38 ABZR87_RS11440 pyridoxal phosphate-dependent aminotransferase — —
Acidovorax sp. GW101-3H11 0.34 Ac3H11_788 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) 0.38 Ac3H11_1508 Aspartate aminotransferase (EC 2.6.1.1) — —
Acinetobacter radioresistens SK82 0.34 MPMX26_00572 Pyrroline-5-carboxylate reductase 0.41 MPMX26_01871 Glutamate-pyruvate aminotransferase AlaA low > 36
Ralstonia solanacearum GMI1000 0.34 RS_RS13440 pyrroline-5-carboxylate reductase 0.38 RS_RS06650 pyridoxal phosphate-dependent aminotransferase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.33 GFF2806 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) 0.38 GFF3934 Aspartate aminotransferase (EC 2.6.1.1) 0.61 22
Variovorax sp. SCN45 0.33 GFF5553 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) 0.39 GFF2803 Alanine transaminase (EC 2.6.1.2) — —
Paraburkholderia graminis OAS925 0.33 ABIE53_000840 pyrroline-5-carboxylate reductase 0.35 ABIE53_002025 alanine-synthesizing transaminase low > 113
Ralstonia solanacearum UW163 0.33 UW163_RS08045 pyrroline-5-carboxylate reductase 0.38 UW163_RS13315 pyridoxal phosphate-dependent aminotransferase — —
Ralstonia solanacearum IBSBF1503 0.33 RALBFv3_RS05580 pyrroline-5-carboxylate reductase 0.38 RALBFv3_RS15870 pyridoxal phosphate-dependent aminotransferase 0.53 34
Paraburkholderia bryophila 376MFSha3.1 0.33 H281DRAFT_04679 pyrroline-5-carboxylate reductase 0.35 H281DRAFT_00809 alanine-synthesizing transaminase low > 103
Ralstonia solanacearum PSI07 0.33 RPSI07_RS11720 pyrroline-5-carboxylate reductase 0.38 RPSI07_RS17495 pyridoxal phosphate-dependent aminotransferase 0.68 13
Dickeya dadantii 3937 0.32 DDA3937_RS17305 pyrroline-5-carboxylate reductase 0.40 DDA3937_RS14345 pyridoxal phosphate-dependent aminotransferase low > 74
Burkholderia phytofirmans PsJN 0.32 BPHYT_RS03490 pyrroline-5-carboxylate reductase 0.35 BPHYT_RS08950 aminotransferase — —
Serratia liquefaciens MT49 0.32 IAI46_21415 pyrroline-5-carboxylate reductase 0.40 IAI46_17720 pyridoxal phosphate-dependent aminotransferase low > 86
Shewanella sp. ANA-3 0.32 Shewana3_1193 pyrroline-5-carboxylate reductase (RefSeq) 0.40 Shewana3_2145 aminotransferase AlaT (RefSeq) low > 73
Shewanella oneidensis MR-1 0.32 SO3354 proC pyrroline-5-carboxylate reductase (NCBI ptt file) 0.40 SO2483 aspartate aminotransferase, putative (NCBI ptt file) low > 76
Dickeya dianthicola ME23 0.32 DZA65_RS18440 pyrroline-5-carboxylate reductase 0.40 DZA65_RS14995 pyridoxal phosphate-dependent aminotransferase — —
Cupriavidus basilensis FW507-4G11 0.32 RR42_RS17360 pyrroline-5-carboxylate reductase 0.39 RR42_RS12545 aminotransferase — —
Dickeya dianthicola 67-19 0.32 HGI48_RS17350 pyrroline-5-carboxylate reductase 0.40 HGI48_RS14320 pyridoxal phosphate-dependent aminotransferase — —
Shewanella loihica PV-4 0.30 Shew_3016 pyrroline-5-carboxylate reductase (RefSeq) 0.40 Shew_1914 aminotransferase AlaT (RefSeq) low > 60
Herbaspirillum seropedicae SmR1 0.30 HSERO_RS18990 pyrroline-5-carboxylate reductase 0.41 HSERO_RS10455 aminotransferase 0.70 30
Rahnella sp. WP5 0.30 EX31_RS02690 pyrroline-5-carboxylate reductase 0.37 EX31_RS19445 pyridoxal phosphate-dependent aminotransferase low > 89
Alteromonas macleodii MIT1002 0.30 MIT1002_03062 Pyrroline-5-carboxylate reductase 0.39 MIT1002_02306 Glutamate-pyruvate aminotransferase AlaA low > 70
Shewanella amazonensis SB2B 0.30 Sama_2478 pyrroline-5-carboxylate reductase (RefSeq) 0.39 Sama_1697 aminotransferase AlaT (RefSeq) low > 62
Pectobacterium carotovorum WPP14 0.30 HER17_RS03805 pyrroline-5-carboxylate reductase 0.40 HER17_RS07115 pyridoxal phosphate-dependent aminotransferase — —
Vibrio cholerae E7946 ATCC 55056 0.30 CSW01_02450 pyrroline-5-carboxylate reductase 0.40 CSW01_09870 pyridoxal phosphate-dependent aminotransferase low > 62
Azospirillum sp. SherDot2 0.28 MPMX19_01399 Pyrroline-5-carboxylate reductase 0.20 MPMX19_02392 Aspartate/prephenate aminotransferase — —
Azospirillum brasilense Sp245 0.27 AZOBR_RS06245 pyrroline-5-carboxylate reductase 0.21 AZOBR_RS12970 aspartate aminotransferase — —
Agrobacterium fabrum C58 0.27 Atu2209 pyrroline-5-carboxylate reductase 0.21 Atu2196 aspartate aminotransferase A — —
Rhodopseudomonas palustris CGA009 0.25 TX73_022630 pyrroline-5-carboxylate reductase 0.20 TX73_022440 pyridoxal phosphate-dependent aminotransferase — —
Rhizobium sp. OAE497 0.25 ABIE40_RS13005 pyrroline-5-carboxylate reductase 0.20 ABIE40_RS12925 pyridoxal phosphate-dependent aminotransferase 0.74 8
Klebsiella michiganensis M5al 0.24 BWI76_RS06170 pyrroline-5-carboxylate reductase 0.40 BWI76_RS20205 aminotransferase AlaT — —
Escherichia fergusonii Becca 0.24 EFB2_03670 Pyrroline-5-carboxylate reductase 0.40 EFB2_01568 Glutamate-pyruvate aminotransferase AlaA low > 86
Escherichia coli ECRC100 0.24 OKFHMN_08610 proC pyrroline-5-carboxylate reductase 0.40 OKFHMN_22825 alaA alanine transaminase AlaA low > 80
Escherichia coli Nissle 1917 0.24 ECOLIN_RS02345 pyrroline-5-carboxylate reductase 0.40 ECOLIN_RS13295 alanine transaminase AlaA low > 55
Escherichia coli ECOR38 0.24 HEPCGN_07250 proC pyrroline-5-carboxylate reductase 0.40 HEPCGN_22030 alaA alanine transaminase AlaA low > 87
Escherichia coli ECRC102 0.24 NIAGMN_06665 proC pyrroline-5-carboxylate reductase 0.40 NIAGMN_20595 alaA alanine transaminase AlaA — —
Escherichia coli ECRC101 0.24 MCAODC_27835 proC pyrroline-5-carboxylate reductase 0.40 MCAODC_13865 alaA alanine transaminase AlaA low > 87
Escherichia coli ECRC99 0.24 KEDOAH_19355 proC pyrroline-5-carboxylate reductase 0.40 KEDOAH_05370 alaA alanine transaminase AlaA — —
Escherichia coli ECRC98 0.24 JDDGAC_12265 proC pyrroline-5-carboxylate reductase 0.40 JDDGAC_26790 alaA alanine transaminase AlaA 0.69 53
Escherichia coli BW25113 0.24 b0386 proC pyrroline-5-carboxylate reductase (NCBI) 0.40 b2290 yfbQ aspartate aminotransferase (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.24 OHPLBJKB_03288 Pyrroline-5-carboxylate reductase 0.40 OHPLBJKB_01415 Glutamate-pyruvate aminotransferase AlaA low > 73
Escherichia coli ECOR27 0.24 NOLOHH_01535 proC pyrroline-5-carboxylate reductase 0.40 NOLOHH_14445 alaA alanine transaminase AlaA low > 75
Escherichia coli BL21 0.24 ECD_00333 pyrroline-5-carboxylate reductase, NAD(P)-binding 0.40 ECD_02215 glutamate-pyruvate aminotransferase; glutamic-pyruvic transaminase (GPT); alanine transaminase low > 61
Escherichia coli ECRC62 0.24 BNILDI_22950 proC pyrroline-5-carboxylate reductase 0.40 BNILDI_13365 alaA alanine transaminase AlaA low > 75
Pantoea sp. MT58 0.24 IAI47_14945 pyrroline-5-carboxylate reductase 0.40 IAI47_06350 pyridoxal phosphate-dependent aminotransferase low > 76
Enterobacter asburiae PDN3 0.23 EX28DRAFT_2585 pyrroline-5-carboxylate reductase 0.39 EX28DRAFT_0319 Aspartate/tyrosine/aromatic aminotransferase low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.23 GFF4283 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) 0.40 GFF1894 Aspartate aminotransferase (EC 2.6.1.1) low > 78
Enterobacter sp. TBS_079 0.23 MPMX20_00976 Pyrroline-5-carboxylate reductase 0.40 MPMX20_03220 Glutamate-pyruvate aminotransferase AlaA low > 85
Erwinia tracheiphila SCR3 0.21 LU632_RS18995 proC pyrroline-5-carboxylate reductase 0.39 LU632_RS07955 pyridoxal phosphate-dependent aminotransferase 0.66 14
Mycobacterium tuberculosis H37Rv 0.20 Rv0500 Probable pyrroline-5-carboxylate reductase ProC (P5CR) (P5C reductase) 0.39 Rv0337c Probable aspartate aminotransferase AspC (transaminase A) (ASPAT) — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.20 Echvi_2635 pyrroline-5-carboxylate reductase 0.17 Echvi_0032 Aspartate/tyrosine/aromatic aminotransferase 0.58 58
Caulobacter crescentus NA1000 Δfur 0.18 CCNA_00528 pyrroline-5-carboxylate reductase 0.20 CCNA_01603 aspartate aminotransferase low > 67
Caulobacter crescentus NA1000 0.18 CCNA_00528 pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data) 0.20 CCNA_01603 aspartate aminotransferase 0.81 65
Pontibacter actiniarum KMM 6156, DSM 19842 0.15 CA264_07730 pyrroline-5-carboxylate reductase 0.41 CA264_06065 aminotransferase low > 74
Brevundimonas sp. GW460-12-10-14-LB2 0.15 A4249_RS09840 pyrroline-5-carboxylate reductase dimerization domain-containing protein 0.21 A4249_RS04680 pyridoxal phosphate-dependent aminotransferase — —
Bifidobacterium breve UCC2003 0.09 BBR_RS14625 pyrroline-5-carboxylate reductase 0.38 BBR_RS15560 aminotransferase class V-fold PLP-dependent enzyme low > 34

Not shown: 16 genomes with orthologs for Xcc-8004.1710.1 only; 2 genomes with orthologs for Xcc-8004.1010.1 only