Conservation of cofitness between RR42_RS10885 and RR42_RS15490 in Cupriavidus basilensis FW507-4G11

79 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Cupriavidus basilensis FW507-4G11 1.0 RR42_RS10885 DNAase 1.0 RR42_RS15490 NrdR family transcriptional regulator 0.37 15
Ralstonia solanacearum GMI1000 0.77 RS_RS09020 TatD family deoxyribonuclease 0.84 RS_RS03665 transcriptional regulator NrdR low > 80
Ralstonia solanacearum IBSBF1503 0.76 RALBFv3_RS01010 TatD family deoxyribonuclease 0.85 RALBFv3_RS12890 transcriptional regulator NrdR low > 76
Ralstonia solanacearum UW163 0.76 UW163_RS14320 TatD family deoxyribonuclease 0.85 UW163_RS00675 transcriptional regulator NrdR — —
Ralstonia solanacearum PSI07 0.76 RPSI07_RS16465 TatD family deoxyribonuclease 0.84 RPSI07_RS20335 transcriptional regulator NrdR low > 81
Ralstonia sp. UNC404CL21Col 0.76 ABZR87_RS12460 TatD family hydrolase 0.84 ABZR87_RS08950 transcriptional regulator NrdR 0.42 38
Herbaspirillum seropedicae SmR1 0.70 HSERO_RS12995 DNAase 0.68 HSERO_RS06145 NrdR family transcriptional regulator low > 78
Paraburkholderia bryophila 376MFSha3.1 0.69 H281DRAFT_00931 TatD DNase family protein 0.61 H281DRAFT_04727 transcriptional repressor NrdR low > 103
Burkholderia phytofirmans PsJN 0.69 BPHYT_RS09640 DNAase 0.60 BPHYT_RS03730 transcriptional repressor NrdR low > 109
Paraburkholderia sabiae LMG 24235 0.69 QEN71_RS21805 TatD family hydrolase 0.60 QEN71_RS26230 transcriptional regulator NrdR low > 153
Paraburkholderia graminis OAS925 0.69 ABIE53_002166 TatD DNase family protein 0.61 ABIE53_000889 transcriptional repressor NrdR low > 113
Dechlorosoma suillum PS 0.68 Dsui_2652 hydrolase, TatD family 0.65 Dsui_1266 transcriptional regulator NrdR low > 51
Hydrogenophaga sp. GW460-11-11-14-LB1 0.62 GFF4665 Putative deoxyribonuclease YcfH 0.65 GFF5153 Ribonucleotide reductase transcriptional regulator NrdR low > 90
Castellaniella sp019104865 MT123 0.61 ABCV34_RS03960 TatD family hydrolase 0.58 ABCV34_RS10550 transcriptional regulator NrdR low > 48
Variovorax sp. SCN45 0.60 GFF34 Uncharacterized metal-dependent hydrolase YcfH 0.65 GFF561 Ribonucleotide reductase transcriptional regulator NrdR low > 127
Acidovorax sp. GW101-3H11 0.59 Ac3H11_2488 Putative deoxyribonuclease YcfH 0.56 Ac3H11_2922 Ribonucleotide reductase transcriptional regulator NrdR — —
Variovorax sp. OAS795 0.58 ABID97_RS16000 TatD family hydrolase 0.65 ABID97_RS17895 transcriptional regulator NrdR low > 91
Kangiella aquimarina DSM 16071 0.50 B158DRAFT_1745 hydrolase, TatD family 0.52 B158DRAFT_1909 transcriptional regulator NrdR low > 40
Shewanella amazonensis SB2B 0.48 Sama_2040 TatD family hydrolase (RefSeq) 0.50 Sama_1015 nrdR transcriptional regulator NrdR (RefSeq) low > 62
Pseudomonas putida KT2440 0.48 PP_1967 tRNA D-aminoacylase 0.52 PP_0513 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP low > 96
Pseudomonas fluorescens GW456-L13 0.48 PfGW456L13_2112 Putative deoxyribonuclease YcfH 0.52 PfGW456L13_1312 Ribonucleotide reductase transcriptional regulator NrdR low > 87
Pseudomonas sp. S08-1 0.48 OH686_22180 Uncharacterized metal-dependent hydrolase YcfH 0.51 OH686_15690 transcriptional regulator NrdR low > 80
Pseudomonas fluorescens FW300-N2E3 0.48 AO353_01325 hydrolase TatD 0.52 AO353_06720 NrdR family transcriptional regulator low > 101
Pseudomonas stutzeri RCH2 0.47 Psest_1696 hydrolase, TatD family 0.53 Psest_3553 transcriptional regulator NrdR — —
Pseudomonas fluorescens SBW25 0.47 PFLU_RS23020 TatD family hydrolase 0.52 PFLU_RS26905 transcriptional regulator NrdR low > 109
Pseudomonas fluorescens SBW25-INTG 0.47 PFLU_RS23020 TatD family hydrolase 0.52 PFLU_RS26905 transcriptional regulator NrdR low > 109
Azospirillum brasilense Sp245 0.47 AZOBR_RS08795 LuxR family transcriptional regulator 0.49 AZOBR_RS10020 NrdR family transcriptional regulator — —
Pseudomonas simiae WCS417 0.47 PS417_21405 hydrolase TatD 0.53 PS417_25270 NrdR family transcriptional regulator low > 88
Azospirillum sp. SherDot2 0.47 MPMX19_01469 putative metal-dependent hydrolase YcfH 0.48 MPMX19_00728 Transcriptional repressor NrdR low > 112
Pseudomonas fluorescens FW300-N2C3 0.46 AO356_20205 hydrolase TatD 0.52 AO356_14925 NrdR family transcriptional regulator — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.46 Psyr_1655 TatD-related deoxyribonuclease 0.53 Psyr_4463 Protein of unknown function DUF193 low > 86
Pseudomonas syringae pv. syringae B728a 0.46 Psyr_1655 TatD-related deoxyribonuclease 0.53 Psyr_4463 Protein of unknown function DUF193 low > 86
Pseudomonas fluorescens FW300-N1B4 0.46 Pf1N1B4_420 Putative deoxyribonuclease YcfH 0.52 Pf1N1B4_2648 Ribonucleotide reductase transcriptional regulator NrdR — —
Rahnella sp. WP5 0.46 EX31_RS24470 metal-dependent hydrolase 0.49 EX31_RS22120 transcriptional regulator NrdR low > 89
Vibrio cholerae E7946 ATCC 55056 0.45 CSW01_10060 YchF/TatD family DNA exonuclease 0.53 CSW01_11565 transcriptional regulator NrdR low > 62
Dickeya dadantii 3937 0.45 DDA3937_RS13085 metal-dependent hydrolase 0.51 DDA3937_RS05500 transcriptional regulator NrdR low > 74
Shewanella loihica PV-4 0.44 Shew_1582 TatD family hydrolase (RefSeq) 0.50 Shew_1186 transcriptional regulator NrdR (RefSeq) low > 60
Shewanella oneidensis MR-1 0.44 SO2610 hydrolase, TatD family (NCBI ptt file) 0.50 SO3470 conserved hypothetical protein TIGR00244 (NCBI ptt file) low > 76
Dickeya dianthicola ME23 0.44 DZA65_RS13620 metal-dependent hydrolase 0.51 DZA65_RS05885 transcriptional regulator NrdR low > 75
Serratia liquefaciens MT49 0.44 IAI46_09825 metal-dependent hydrolase 0.49 IAI46_04890 transcriptional regulator NrdR 0.49 82
Dickeya dianthicola 67-19 0.44 HGI48_RS13150 metal-dependent hydrolase 0.51 HGI48_RS05560 transcriptional regulator NrdR low > 71
Shewanella sp. ANA-3 0.44 Shewana3_1769 TatD family hydrolase (RefSeq) 0.50 Shewana3_1095 nrdR transcriptional regulator NrdR (RefSeq) low > 73
Sphingomonas koreensis DSMZ 15582 0.43 Ga0059261_0126 hydrolase, TatD family 0.46 Ga0059261_1985 transcriptional regulator NrdR low > 68
Klebsiella michiganensis M5al 0.43 BWI76_RS11125 metal-dependent hydrolase 0.50 BWI76_RS06345 transcriptional regulator NrdR — —
Pectobacterium carotovorum WPP14 0.43 HER17_RS08685 metal-dependent hydrolase 0.49 HER17_RS15965 transcriptional regulator NrdR low > 75
Erwinia tracheiphila SCR3 0.43 LU632_RS14785 metal-dependent hydrolase 0.49 LU632_RS18590 nrdR transcriptional regulator NrdR low > 74
Pantoea sp. MT58 0.43 IAI47_12035 metal-dependent hydrolase 0.52 IAI47_14775 transcriptional regulator NrdR low > 76
Alteromonas macleodii MIT1002 0.43 MIT1002_01740 putative deoxyribonuclease YcfH 0.49 MIT1002_02701 Transcriptional repressor NrdR low > 70
Escherichia coli ECRC102 0.42 NIAGMN_24290 ycfH metal-dependent hydrolase 0.51 NIAGMN_06515 nrdR transcriptional regulator NrdR — —
Escherichia coli ECRC99 0.42 KEDOAH_24215 ycfH metal-dependent hydrolase 0.51 KEDOAH_19505 nrdR transcriptional regulator NrdR — —
Escherichia coli ECRC101 0.42 MCAODC_22900 ycfH metal-dependent hydrolase 0.51 MCAODC_27685 nrdR transcriptional regulator NrdR low > 87
Escherichia coli BL21 0.42 ECD_01096 putative DNase 0.51 ECD_00361 Nrd regulon repressor low > 61
Escherichia coli BW25113 0.42 b1100 ycfH predicted metallodependent hydrolase (NCBI) 0.51 b0413 ybaD hypothetical protein (NCBI) — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.42 OHPLBJKB_02566 putative metal-dependent hydrolase YcfH 0.51 OHPLBJKB_03263 Transcriptional repressor NrdR low > 73
Escherichia coli ECRC100 0.42 OKFHMN_03540 ycfH metal-dependent hydrolase 0.51 OKFHMN_08460 nrdR transcriptional regulator NrdR low > 80
Escherichia coli ECOR27 0.42 NOLOHH_21070 ycfH metal-dependent hydrolase 0.51 NOLOHH_01405 nrdR transcriptional regulator NrdR — —
Escherichia coli ECOR38 0.42 HEPCGN_23940 ycfH metal-dependent hydrolase 0.51 HEPCGN_07085 nrdR transcriptional regulator NrdR low > 87
Escherichia coli ECRC98 0.42 JDDGAC_07200 ycfH metal-dependent hydrolase 0.51 JDDGAC_12115 nrdR transcriptional regulator NrdR low > 86
Escherichia coli Nissle 1917 0.42 ECOLIN_RS06350 metal-dependent hydrolase 0.51 ECOLIN_RS02500 transcriptional regulator NrdR low > 55
Escherichia coli ECRC62 0.42 BNILDI_19230 ycfH metal-dependent hydrolase 0.51 BNILDI_22820 nrdR transcriptional regulator NrdR — —
Escherichia fergusonii Becca 0.42 EFB2_02875 putative metal-dependent hydrolase YcfH 0.51 EFB2_03644 Transcriptional repressor NrdR low > 86
Enterobacter sp. TBS_079 0.42 MPMX20_01780 putative metal-dependent hydrolase YcfH 0.51 MPMX20_01005 Transcriptional repressor NrdR low > 85
Rhodopseudomonas palustris CGA009 0.42 TX73_014390 TatD family hydrolase 0.44 TX73_014120 transcriptional regulator NrdR — —
Magnetospirillum magneticum AMB-1 0.41 AMB_RS12295 TatD family deoxyribonuclease 0.49 AMB_RS11820 transcriptional regulator NrdR low > 64
Enterobacter asburiae PDN3 0.41 EX28DRAFT_1829 hydrolase, TatD family 0.51 EX28DRAFT_2557 transcriptional regulator NrdR — —
Sinorhizobium meliloti 1021 0.41 SMc01193 hypothetical protein 0.43 SMc01771 transcriptional regulator NrdR — —
Rhodospirillum rubrum S1H 0.41 Rru_A1700 TatD-related deoxyribonuclease (NCBI) 0.48 Rru_A1826 Protein of unknown function DUF193 (NCBI) — —
Acinetobacter radioresistens SK82 0.40 MPMX26_01224 putative metal-dependent hydrolase YcfH 0.45 MPMX26_00151 Transcriptional repressor NrdR low > 36
Phaeobacter inhibens DSM 17395 0.39 PGA1_c07990 putative hydrolase, TatD family 0.48 PGA1_c08860 transcriptional repressor — —
Dinoroseobacter shibae DFL-12 0.38 Dshi_0920 hydrolase, TatD family (RefSeq) 0.47 Dshi_2257 ATP-cone domain protein (RefSeq) — —
Bosea sp. OAE506 0.37 ABIE41_RS15945 TatD family hydrolase 0.44 ABIE41_RS19765 transcriptional regulator NrdR — —
Agrobacterium fabrum C58 0.36 Atu1495 hypothetical protein 0.43 Atu1166 hypothetical protein — —
Rhizobium sp. OAE497 0.35 ABIE40_RS09480 TatD family hydrolase 0.41 ABIE40_RS06720 transcriptional regulator NrdR low > 107
Brevundimonas sp. GW460-12-10-14-LB2 0.32 A4249_RS04755 TatD family hydrolase 0.51 A4249_RS06035 transcriptional regulator NrdR — —
Synechococcus elongatus PCC 7942 0.32 Synpcc7942_1521 tatD Sec-independent protein translocase TatD 0.36 Synpcc7942_0695 hypothetical protein low > 38
Marinobacter adhaerens HP15 0.31 HP15_3420 hydrolase, TatD family 0.55 HP15_491 transcriptional repressor NrdR low > 73
Fusobacterium nucleatum SB010 0.31 HUW76_08855 TatD family hydrolase 0.40 HUW76_09070 transcriptional repressor NrdR low > 35
Caulobacter crescentus NA1000 0.30 CCNA_01898 Mg-dependent Dnase TatD 0.48 CCNA_01420 NrdR family transcriptional regulator low > 66
Caulobacter crescentus NA1000 Δfur 0.30 CCNA_01898 Mg-dependent Dnase TatD 0.48 CCNA_01420 NrdR family transcriptional regulator low > 67
Mycobacterium tuberculosis H37Rv 0.27 Rv1008 Probable deoxyribonuclease TatD (YJJV protein) 0.39 Rv2718c Probable transcriptional regulatory protein NrdR low > 58

Not shown: 14 genomes with orthologs for RR42_RS10885 only; 7 genomes with orthologs for RR42_RS15490 only