Conservation of cofitness between QEN71_RS23895 and QEN71_RS00655 in Paraburkholderia sabiae LMG 24235

80 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Paraburkholderia sabiae LMG 24235 1.0 QEN71_RS23895 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 1.0 QEN71_RS00655 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.50 13
Paraburkholderia graminis OAS925 0.90 ABIE53_001640 23S rRNA (adenine2030-N6)-methyltransferase 0.75 ABIE53_000470 16S rRNA (cytidine1402-2'-O)-methyltransferase low > 113
Burkholderia phytofirmans PsJN 0.90 BPHYT_RS06880 competence protein ComJ 0.82 BPHYT_RS01940 16S rRNA methyltransferase low > 109
Ralstonia solanacearum GMI1000 0.67 RS_RS16875 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.48 RS_RS16360 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 80
Ralstonia solanacearum UW163 0.67 UW163_RS04530 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.51 UW163_RS05115 16S rRNA (cytidine(1402)-2'-O)-methyltransferase — —
Ralstonia solanacearum IBSBF1503 0.67 RALBFv3_RS09065 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.51 RALBFv3_RS08495 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 76
Ralstonia solanacearum PSI07 0.66 RPSI07_RS08205 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.49 RPSI07_RS08730 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 81
Ralstonia sp. UNC404CL21Col 0.66 ABZR87_RS04360 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.48 ABZR87_RS03815 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 80
Cupriavidus basilensis FW507-4G11 0.65 RR42_RS09005 competence protein ComJ 0.51 RR42_RS19740 16S rRNA methyltransferase low > 128
Herbaspirillum seropedicae SmR1 0.64 HSERO_RS10595 competence protein ComJ 0.58 HSERO_RS23345 16S rRNA methyltransferase low > 78
Castellaniella sp019104865 MT123 0.49 ABCV34_RS03075 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.41 ABCV34_RS14320 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 48
Escherichia fergusonii Becca 0.44 EFB2_00316 Ribosomal RNA large subunit methyltransferase J 0.39 EFB2_00677 Ribosomal RNA small subunit methyltransferase I low > 86
Escherichia coli Nissle 1917 0.44 ECOLIN_RS19990 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.39 ECOLIN_RS18085 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 55
Escherichia coli ECRC99 0.44 KEDOAH_11735 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.39 KEDOAH_09915 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase — —
Escherichia coli ECOR27 0.44 NOLOHH_08345 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.39 NOLOHH_10035 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 75
Enterobacter sp. TBS_079 0.44 MPMX20_04398 Ribosomal RNA large subunit methyltransferase J 0.37 MPMX20_04050 Ribosomal RNA small subunit methyltransferase I low > 85
Escherichia coli ECRC101 0.44 MCAODC_06925 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.39 MCAODC_08755 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 87
Escherichia coli ECRC102 0.44 NIAGMN_14175 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.39 NIAGMN_15995 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase — —
Escherichia coli BL21 0.44 ECD_03348 23S rRNA m(6)A2030 methyltransferase, SAM-dependent 0.39 ECD_03013 16S rRNA C1402 2'-O-ribose methyltransferase, SAM-dependent low > 61
Escherichia coli ECRC100 0.44 OKFHMN_16410 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.39 OKFHMN_18235 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 80
Escherichia coli ECRC62 0.44 BNILDI_03215 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.39 BNILDI_01495 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.63 61
Enterobacter asburiae PDN3 0.43 EX28DRAFT_4062 Protein involved in catabolism of external DNA 0.37 EX28DRAFT_3195 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.41 20
Hydrogenophaga sp. GW460-11-11-14-LB1 0.43 GFF1683 Protein involved in catabolism of external DNA 0.37 GFF2715 rRNA small subunit methyltransferase I 0.65 67
Escherichia coli ECOR38 0.43 HEPCGN_15320 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.39 HEPCGN_17110 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 87
Klebsiella michiganensis M5al 0.43 BWI76_RS26680 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.36 BWI76_RS24910 rRNA (cytidine-2'-O-)-methyltransferase 0.16 27
Escherichia coli ECRC98 0.43 JDDGAC_20040 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.39 JDDGAC_21860 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 86
Variovorax sp. SCN45 0.43 GFF2057 23S rRNA (adenine(2030)-N(6))-methyltransferase (EC 2.1.1.266) 0.41 GFF3735 16S rRNA (cytidine(1402)-2'-O)-methyltransferase (EC 2.1.1.198) low > 127
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.43 GFF515 Protein involved in catabolism of external DNA 0.37 GFF1521 rRNA small subunit methyltransferase I low > 78
Escherichia coli HS(pFamp)R (ATCC 700891) 0.43 OHPLBJKB_00204 Ribosomal RNA large subunit methyltransferase J 0.38 OHPLBJKB_00555 Ribosomal RNA small subunit methyltransferase I low > 73
Escherichia coli BW25113 0.43 b3499 yhiR predicted DNA (exogenous) processing protein (NCBI) 0.39 b3146 yraL predicted methyltransferase (NCBI) 0.19 15
Pectobacterium carotovorum WPP14 0.43 HER17_RS21245 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.39 HER17_RS19860 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 75
Rahnella sp. WP5 0.42 EX31_RS05170 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.38 EX31_RS12550 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 89
Serratia liquefaciens MT49 0.42 IAI46_24235 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.37 IAI46_22295 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 86
Pantoea sp. MT58 0.42 IAI47_01340 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.37 IAI47_02850 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 76
Dickeya dianthicola 67-19 0.42 HGI48_RS00055 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.39 HGI48_RS01610 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 71
Variovorax sp. OAS795 0.42 ABID97_RS25005 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.41 ABID97_RS00285 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 91
Dickeya dianthicola ME23 0.41 DZA65_RS00045 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.38 DZA65_RS01685 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 75
Dickeya dadantii 3937 0.41 DDA3937_RS21255 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.39 DDA3937_RS01715 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 74
Acidovorax sp. GW101-3H11 0.40 Ac3H11_3047 Protein involved in catabolism of external DNA 0.41 Ac3H11_4466 rRNA small subunit methyltransferase I — —
Vibrio cholerae E7946 ATCC 55056 0.40 CSW01_01005 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.42 CSW01_03090 rRNA (cytidine-2'-O-)-methyltransferase low > 62
Erwinia tracheiphila SCR3 0.40 LU632_RS19485 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.40 LU632_RS02230 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 74
Shewanella loihica PV-4 0.39 Shew_3648 hypothetical protein (RefSeq) 0.40 Shew_0228 uroporphyrin-III C/tetrapyrrole methyltransferase (RefSeq) low > 60
Shewanella amazonensis SB2B 0.39 Sama_3563 hypothetical protein (RefSeq) 0.39 Sama_3353 hypothetical protein (RefSeq) low > 62
Shewanella sp. ANA-3 0.39 Shewana3_4038 hypothetical protein (RefSeq) 0.38 Shewana3_3879 hypothetical protein (RefSeq) low > 73
Shewanella oneidensis MR-1 0.39 SO4659 conserved hypothetical protein (NCBI ptt file) 0.38 SO0301 hypothetical methyltransferase (NCBI ptt file) low > 76
Pseudomonas sp. S08-1 0.38 OH686_09780 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.39 OH686_08340 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 80
Pseudomonas putida KT2440 0.37 PP_4945 23S rRNA m(6)A2030 methyltransferase 0.39 PP_1326 16S rRNA 2'-O-ribose C1402 methyltransferase low > 96
Pseudomonas fluorescens FW300-N2E2 0.36 Pf6N2E2_3679 Protein involved in catabolism of external DNA 0.42 Pf6N2E2_5346 rRNA small subunit methyltransferase I low > 103
Pseudomonas fluorescens FW300-N2C3 0.35 AO356_08990 lactate dehydrogenase 0.42 AO356_17110 methyltransferase low > 104
Agrobacterium fabrum C58 0.35 Atu1135 hypothetical protein 0.33 Atu0302 tetrapyrrole methylase family protein low > 89
Pseudomonas syringae pv. syringae B728a ΔmexB 0.35 Psyr_4772 Protein of unknown function DUF519 0.41 Psyr_4112 Protein of unknown function UPF0011 low > 86
Azospirillum brasilense Sp245 0.35 AZOBR_RS21900 lactate dehydrogenase 0.31 AZOBR_RS02155 16S rRNA methyltransferase 0.26 77
Pseudomonas syringae pv. syringae B728a 0.35 Psyr_4772 Protein of unknown function DUF519 0.41 Psyr_4112 Protein of unknown function UPF0011 low > 86
Pseudomonas fluorescens SBW25-INTG 0.35 PFLU_RS02255 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.41 PFLU_RS04655 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 109
Pseudomonas simiae WCS417 0.35 PS417_02200 lactate dehydrogenase 0.41 PS417_04590 methyltransferase — —
Pseudomonas fluorescens FW300-N2E3 0.35 AO353_12840 lactate dehydrogenase 0.41 AO353_15290 methyltransferase low > 101
Pseudomonas fluorescens SBW25 0.35 PFLU_RS02255 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.41 PFLU_RS04655 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 109
Pseudomonas sp. RS175 0.35 PFR28_05056 Ribosomal RNA large subunit methyltransferase J 0.41 PFR28_03597 Ribosomal RNA small subunit methyltransferase I 0.16 61
Pseudomonas stutzeri RCH2 0.35 Psest_0408 Protein involved in catabolism of external DNA 0.42 Psest_3270 probable S-adenosylmethionine-dependent methyltransferase, YraL family low > 67
Sinorhizobium meliloti 1021 0.34 SMc00608 hypothetical protein 0.34 SMc00416 hypothetical protein low > 103
Pseudomonas fluorescens FW300-N1B4 0.34 Pf1N1B4_1481 Protein involved in catabolism of external DNA 0.41 Pf1N1B4_953 rRNA small subunit methyltransferase I — —
Pseudomonas fluorescens GW456-L13 0.34 PfGW456L13_219 Protein involved in catabolism of external DNA 0.40 PfGW456L13_1643 rRNA small subunit methyltransferase I low > 87
Azospirillum sp. SherDot2 0.34 MPMX19_01202 Ribosomal RNA large subunit methyltransferase J 0.33 MPMX19_02471 Ribosomal RNA small subunit methyltransferase I low > 112
Magnetospirillum magneticum AMB-1 0.34 AMB_RS03020 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.33 AMB_RS22780 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 64
Rhizobium sp. OAE497 0.34 ABIE40_RS06520 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.34 ABIE40_RS01370 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 107
Alteromonas macleodii MIT1002 0.34 MIT1002_02015 Ribosomal RNA large subunit methyltransferase J 0.32 MIT1002_03113 Ribosomal RNA small subunit methyltransferase I low > 70
Rhodanobacter sp. FW510-T8 0.32 OKGIIK_04560 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.33 OKGIIK_11735 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 52
Rhodanobacter denitrificans FW104-10B01 0.32 LRK54_RS02005 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.34 LRK54_RS12190 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 59
Rhodanobacter denitrificans MT42 0.32 LRK55_RS01780 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.35 LRK55_RS11925 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 63
Rhodospirillum rubrum S1H 0.32 Rru_A1938 Protein of unknown function DUF519 (NCBI) 0.28 Rru_A3693 Protein of unknown function UPF0011 (NCBI) low > 58
Dyella japonica UNC79MFTsu3.2 0.31 ABZR86_RS21180 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.35 ABZR86_RS11380 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 74
Lysobacter sp. OAE881 0.31 ABIE51_RS14285 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.40 ABIE51_RS04695 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 62
Acinetobacter radioresistens SK82 0.31 MPMX26_02660 Ribosomal RNA large subunit methyltransferase J 0.41 MPMX26_02282 Ribosomal RNA small subunit methyltransferase I low > 36
Phaeobacter inhibens DSM 17395 0.29 PGA1_c26480 Protein involved in catabolism of external DNA 0.24 PGA1_c26730 probable S-adenosylmethionine-dependent methyltransferase, YraL family low > 62
Xanthomonas campestris pv. campestris strain 8004 0.29 Xcc-8004.1778.1 Protein involved in catabolism of external DNA 0.40 Xcc-8004.4371.1 rRNA small subunit methyltransferase I low > 74
Rhodopseudomonas palustris CGA009 0.28 TX73_006025 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.35 TX73_001680 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 86
Bosea sp. OAE506 0.26 ABIE41_RS11490 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.29 ABIE41_RS03315 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 77
Marinobacter adhaerens HP15 0.25 HP15_2563 protein containing DUF519 0.43 HP15_554 tetrapyrrole methylase family protein low > 73
Brevundimonas sp. GW460-12-10-14-LB2 0.22 A4249_RS02525 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.28 A4249_RS13300 16S rRNA (cytidine(1402)-2'-O)-methyltransferase — —
Caulobacter crescentus NA1000 Δfur 0.22 CCNA_01152 external DNA uptake/catabolism protein 0.29 CCNA_00143 ribosomal RNA small subunit methyltransferase I low > 67
Caulobacter crescentus NA1000 0.22 CCNA_01152 external DNA uptake/catabolism protein 0.29 CCNA_00143 ribosomal RNA small subunit methyltransferase I low > 66

Not shown: 2 genomes with orthologs for QEN71_RS23895 only; 7 genomes with orthologs for QEN71_RS00655 only