Conservation of cofitness between Psyr_1407 and Psyr_5034 in Pseudomonas syringae pv. syringae B728a

74 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_1407 Protein of unknown function DUF28 1.0 Psyr_5034 CBS:Protein of unknown function DUF21:Transporter-associated region 0.51 1
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_1407 Protein of unknown function DUF28 1.00 Psyr_5034 CBS:Protein of unknown function DUF21:Transporter-associated region low > 86
Pseudomonas fluorescens GW456-L13 0.91 PfGW456L13_1850 FIG000859: hypothetical protein YebC 0.87 PfGW456L13_760 Phosphate regulon metal ion transporter containing CBS domains 0.34 39
Pseudomonas fluorescens FW300-N2E2 0.89 Pf6N2E2_5534 FIG000859: hypothetical protein YebC 0.88 Pf6N2E2_4068 Phosphate regulon metal ion transporter containing CBS domains low > 103
Pseudomonas fluorescens FW300-N2C3 0.89 AO356_18010 hypothetical protein 0.88 AO356_11010 hypothetical protein low > 104
Pseudomonas sp. RS175 0.89 PFR28_03415 Transcriptional regulatory protein PmpR 0.88 PFR28_04481 hypothetical protein 0.38 2
Pseudomonas fluorescens FW300-N2E3 0.86 AO353_03595 hypothetical protein 0.88 AO353_09865 hypothetical protein low > 101
Pseudomonas fluorescens FW300-N1B4 0.86 Pf1N1B4_640 FIG000859: hypothetical protein YebC 0.86 Pf1N1B4_2042 Phosphate regulon metal ion transporter containing CBS domains — —
Pseudomonas simiae WCS417 0.86 PS417_22460 hypothetical protein 0.88 PS417_28050 hypothetical protein — —
Pseudomonas fluorescens SBW25 0.86 PFLU_RS24100 YebC/PmpR family DNA-binding transcriptional regulator 0.88 PFLU_RS29735 HlyC/CorC family transporter low > 109
Pseudomonas fluorescens SBW25-INTG 0.86 PFLU_RS24100 YebC/PmpR family DNA-binding transcriptional regulator 0.88 PFLU_RS29735 HlyC/CorC family transporter low > 109
Pseudomonas putida KT2440 0.83 PP_1214 putative transcriptional regulatory protein 0.84 PP_5322 putative metal ion transporter low > 96
Pseudomonas stutzeri RCH2 0.75 Psest_1494 DNA-binding regulatory protein, YebC/PmpR family 0.81 Psest_3847 Hemolysins and related proteins containing CBS domains — —
Pseudomonas sp. S08-1 0.75 OH686_19120 Probable transcriptional regulatory protein YebC 0.78 OH686_13455 Phosphate regulon metal ion transporter containing CBS domains 0.54 33
Shewanella oneidensis MR-1 0.70 SO2432 conserved hypothetical protein TIGR01033 (NCBI ptt file) 0.16 SO2815 CBS domain protein (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.70 Shewana3_1954 hypothetical protein (RefSeq) 0.12 Shewana3_0353 hypothetical protein (RefSeq) low > 73
Pantoea sp. MT58 0.69 IAI47_08435 YebC/PmpR family DNA-binding transcriptional regulator 0.14 IAI47_02710 HlyC/CorC family transporter low > 76
Dickeya dianthicola 67-19 0.68 HGI48_RS10095 YebC/PmpR family DNA-binding transcriptional regulator 0.13 HGI48_RS17225 HlyC/CorC family transporter low > 71
Dickeya dianthicola ME23 0.68 DZA65_RS10510 YebC/PmpR family DNA-binding transcriptional regulator 0.13 DZA65_RS18310 HlyC/CorC family transporter low > 75
Pectobacterium carotovorum WPP14 0.68 HER17_RS11855 YebC/PmpR family DNA-binding transcriptional regulator 0.15 HER17_RS03970 hemolysin family protein low > 75
Dickeya dadantii 3937 0.68 DDA3937_RS10065 YebC/PmpR family DNA-binding transcriptional regulator 0.13 DDA3937_RS17170 HlyC/CorC family transporter low > 74
Shewanella amazonensis SB2B 0.68 Sama_1842 hypothetical protein (RefSeq) 0.12 Sama_3284 hemolysin, putative (RefSeq) 0.30 44
Rahnella sp. WP5 0.68 EX31_RS11685 YebC/PmpR family DNA-binding transcriptional regulator 0.13 EX31_RS08705 HlyC/CorC family transporter low > 89
Shewanella loihica PV-4 0.68 Shew_2078 hypothetical protein (RefSeq) 0.12 Shew_0284 hypothetical protein (RefSeq) — —
Serratia liquefaciens MT49 0.67 IAI46_14635 YebC/PmpR family DNA-binding transcriptional regulator 0.14 IAI46_01760 HlyC/CorC family transporter low > 86
Enterobacter sp. TBS_079 0.67 MPMX20_02769 putative transcriptional regulatory protein YebC 0.14 MPMX20_00495 hypothetical protein low > 85
Enterobacter asburiae PDN3 0.67 EX28DRAFT_0693 DNA-binding regulatory protein, YebC/PmpR family 0.13 EX28DRAFT_3404 Hemolysins and related proteins containing CBS domains low > 76
Escherichia coli ECRC99 0.67 KEDOAH_01850 putative transcriptional regulatory protein YebC 0.13 KEDOAH_16140 paeA Polyamine export protein — —
Escherichia coli ECRC101 0.67 MCAODC_19150 putative transcriptional regulatory protein YebC 0.13 MCAODC_02530 paeA Polyamine export protein low > 87
Klebsiella michiganensis M5al 0.67 BWI76_RS18160 YebC/PmpR family DNA-binding transcriptional regulator 0.14 BWI76_RS02765 membrane protein — —
Escherichia coli ECRC102 0.67 NIAGMN_01805 putative transcriptional regulatory protein YebC 0.13 NIAGMN_09865 paeA Polyamine export protein — —
Escherichia coli BL21 0.67 ECD_01835 UPF0082 family protein 0.13 ECD_04089 UPF0053 family inner membrane protein low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.67 OHPLBJKB_01864 putative transcriptional regulatory protein YebC 0.13 OHPLBJKB_03816 hypothetical protein low > 73
Escherichia coli ECOR27 0.67 NOLOHH_16700 putative transcriptional regulatory protein YebC 0.13 NOLOHH_04280 paeA Polyamine export protein low > 75
Escherichia fergusonii Becca 0.67 EFB2_02078 putative transcriptional regulatory protein YebC 0.13 EFB2_04311 hypothetical protein low > 86
Escherichia coli Nissle 1917 0.67 ECOLIN_RS10380 YebC/PmpR family DNA-binding transcriptional regulator 0.13 ECOLIN_RS24495 hemolysin family protein low > 55
Escherichia coli ECOR38 0.67 HEPCGN_04665 putative transcriptional regulatory protein YebC 0.13 HEPCGN_10215 paeA Polyamine export protein low > 87
Escherichia coli ECRC98 0.67 JDDGAC_00830 putative transcriptional regulatory protein YebC 0.13 JDDGAC_15655 paeA Polyamine export protein low > 86
Escherichia coli ECRC100 0.67 OKFHMN_26255 putative transcriptional regulatory protein YebC 0.13 OKFHMN_12015 paeA Polyamine export protein low > 80
Escherichia coli ECRC62 0.67 BNILDI_15490 putative transcriptional regulatory protein YebC 0.13 BNILDI_07240 tlyC Polyamine export protein low > 75
Escherichia coli BW25113 0.67 b1864 yebC hypothetical protein (NCBI) 0.13 b4218 ytfL predicted inner membrane protein (NCBI) low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.67 GFF1645 FIG000859: hypothetical protein YebC 0.14 GFF871 Putative membrane protein low > 78
Erwinia tracheiphila SCR3 0.65 LU632_RS13425 YebC/PmpR family DNA-binding transcriptional regulator 0.13 LU632_RS02100 hemolysin family protein low > 74
Acinetobacter radioresistens SK82 0.60 MPMX26_01851 putative transcriptional regulatory protein YebC 0.11 MPMX26_02321 hypothetical protein low > 36
Herbaspirillum seropedicae SmR1 0.57 HSERO_RS17750 transcriptional regulator 0.43 HSERO_RS05435 hemolysin protein — —
Paraburkholderia graminis OAS925 0.56 ABIE53_001546 YebC/PmpR family DNA-binding regulatory protein 0.43 ABIE53_004821 CBS domain containing-hemolysin-like protein low > 113
Paraburkholderia bryophila 376MFSha3.1 0.56 H281DRAFT_04522 DNA-binding regulatory protein, YebC/PmpR family 0.45 H281DRAFT_06055 Hemolysin, contains CBS domains — —
Burkholderia phytofirmans PsJN 0.56 BPHYT_RS06410 transcriptional regulator 0.44 BPHYT_RS33815 hypothetical protein low > 109
Cupriavidus basilensis FW507-4G11 0.55 RR42_RS04735 hypothetical protein 0.14 RR42_RS04375 magnesium transporter 0.34 96
Paraburkholderia sabiae LMG 24235 0.55 QEN71_RS24395 YebC/PmpR family DNA-binding transcriptional regulator 0.42 QEN71_RS17705 hemolysin family protein low > 153
Ralstonia solanacearum PSI07 0.53 RPSI07_RS13685 YebC/PmpR family DNA-binding transcriptional regulator 0.13 RPSI07_RS13270 HlyC/CorC family transporter — —
Ralstonia solanacearum GMI1000 0.53 RS_RS10990 YebC/PmpR family DNA-binding transcriptional regulator 0.13 RS_RS11430 HlyC/CorC family transporter low > 80
Ralstonia solanacearum IBSBF1503 0.53 RALBFv3_RS03540 YebC/PmpR family DNA-binding transcriptional regulator 0.13 RALBFv3_RS03950 HlyC/CorC family transporter — —
Ralstonia solanacearum UW163 0.53 UW163_RS10130 YebC/PmpR family DNA-binding transcriptional regulator 0.13 UW163_RS09720 HlyC/CorC family transporter — —
Variovorax sp. SCN45 0.51 GFF303 Probable transcriptional regulatory protein YebC 0.13 GFF2520 UPF0053 inner membrane protein YtfL low > 127
Variovorax sp. OAS795 0.50 ABID97_RS16740 YebC/PmpR family DNA-binding transcriptional regulator 0.13 ABID97_RS07170 hemolysin family protein low > 91
Desulfovibrio vulgaris Miyazaki F 0.50 DvMF_3201 hypothetical protein (RefSeq) 0.12 DvMF_0831 protein of unknown function DUF21 (RefSeq) low > 51
Lysobacter sp. OAE881 0.50 ABIE51_RS05035 YebC/PmpR family DNA-binding transcriptional regulator 0.15 ABIE51_RS06575 hemolysin family protein low > 62
Desulfovibrio vulgaris Hildenborough JW710 0.50 DVU2259 conserved hypothetical protein TIGR01033 (TIGR) 0.15 DVU2148 CBS/transporter associated domain protein (TIGR) low > 55
Xanthomonas campestris pv. campestris strain 8004 0.49 Xcc-8004.1434.1 FIG000859: hypothetical protein YebC 0.43 Xcc-8004.3404.1 FIG01211089: hypothetical protein low > 74
Sinorhizobium meliloti 1021 0.48 SMc03969 hypothetical protein 0.16 SMc00240 hypothetical protein low > 103
Rhodanobacter denitrificans MT42 0.46 LRK55_RS04700 YebC/PmpR family DNA-binding transcriptional regulator 0.12 LRK55_RS12675 hemolysin family protein low > 63
Rhodanobacter denitrificans FW104-10B01 0.46 LRK54_RS04920 YebC/PmpR family DNA-binding transcriptional regulator 0.12 LRK54_RS12975 hemolysin family protein low > 59
Rhodopseudomonas palustris CGA009 0.45 TX73_005640 YebC/PmpR family DNA-binding transcriptional regulator 0.28 TX73_002605 hemolysin family protein low > 86
Rhodanobacter sp. FW510-T8 0.45 OKGIIK_01830 tACO1 YebC/PmpR family DNA-binding transcriptional regulator 0.14 OKGIIK_02350 tlyC Hemolysin-related protein, contains CBS domains, UPF0053 family low > 52
Bifidobacterium breve UCC2003 0.43 BBR_RS15645 YebC/PmpR family DNA-binding transcriptional regulator 0.16 BBR_RS10445 HlyC/CorC family transporter — —
Dyella japonica UNC79MFTsu3.2 0.41 ABZR86_RS10850 YebC/PmpR family DNA-binding transcriptional regulator 0.15 ABZR86_RS19900 hemolysin family protein — —
Synechococcus elongatus PCC 7942 0.40 Synpcc7942_1017 hypothetical protein 0.18 Synpcc7942_2595 hypothetical protein low > 38
Vibrio cholerae E7946 ATCC 55056 0.31 CSW01_14085 transcriptional regulator 0.11 CSW01_18340 HlyC/CorC family transporter low > 62
Parabacteroides merdae CL09T00C40 0.31 HMPREF1078_RS09835 YebC/PmpR family DNA-binding transcriptional regulator 0.15 HMPREF1078_RS00430 hemolysin family protein low > 61
Bacteroides ovatus ATCC 8483 0.29 BACOVA_02249 DNA-binding regulatory protein, YebC/PmpR family 0.15 BACOVA_01289 hypothetical protein low > 94
Bacteroides thetaiotaomicron VPI-5482 0.29 BT0627 conserved hypothetical protein, with a conserved domain of unknown function (NCBI ptt file) 0.15 BT0148 putative hemolysin (NCBI ptt file) — —
Bacteroides stercoris CC31F 0.28 HMPREF1181_RS16620 YebC/PmpR family DNA-binding transcriptional regulator 0.16 HMPREF1181_RS05310 HlyC/CorC family transporter low > 56
Mucilaginibacter yixingensis YX-36 DSM 26809 0.28 ABZR88_RS22270 YebC/PmpR family DNA-binding transcriptional regulator 0.21 ABZR88_RS17090 hemolysin family protein — —
Pedobacter sp. GW460-11-11-14-LB5 0.26 CA265_RS15330 YebC/PmpR family DNA-binding transcriptional regulator 0.22 CA265_RS23615 hemolysin low > 88

Not shown: 27 genomes with orthologs for Psyr_1407 only; 0 genomes with orthologs for Psyr_5034 only