Conservation of cofitness between Psyr_1655 and Psyr_4761 in Pseudomonas syringae pv. syringae B728a

80 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_1655 TatD-related deoxyribonuclease 1.0 Psyr_4761 DNA-(apurinic or apyrimidinic site) lyase / Formamidopyrimidine-DNA glycosylase 0.41 12
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_1655 TatD-related deoxyribonuclease 1.00 Psyr_4761 DNA-(apurinic or apyrimidinic site) lyase / Formamidopyrimidine-DNA glycosylase low > 86
Pseudomonas fluorescens SBW25 0.89 PFLU_RS23020 TatD family hydrolase 0.86 PFLU_RS28515 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 109
Pseudomonas fluorescens SBW25-INTG 0.89 PFLU_RS23020 TatD family hydrolase 0.86 PFLU_RS28515 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 109
Pseudomonas fluorescens FW300-N2E2 0.89 Pf6N2E2_5960 Putative deoxyribonuclease YcfH 0.87 Pf6N2E2_4569 Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) low > 103
Pseudomonas simiae WCS417 0.89 PS417_21405 hydrolase TatD 0.86 PS417_26870 5-hydroxymethyluracil DNA glycosylase low > 88
Pseudomonas fluorescens FW300-N2C3 0.89 AO356_20205 hydrolase TatD 0.87 AO356_13270 5-hydroxymethyluracil DNA glycosylase low > 104
Pseudomonas sp. RS175 0.89 PFR28_03002 putative metal-dependent hydrolase YcfH 0.92 PFR28_04272 Formamidopyrimidine-DNA glycosylase low > 88
Pseudomonas fluorescens FW300-N2E3 0.88 AO353_01325 hydrolase TatD 0.91 AO353_08320 5-hydroxymethyluracil DNA glycosylase low > 101
Pseudomonas fluorescens GW456-L13 0.88 PfGW456L13_2112 Putative deoxyribonuclease YcfH 0.91 PfGW456L13_979 Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) low > 87
Pseudomonas sp. S08-1 0.86 OH686_22180 Uncharacterized metal-dependent hydrolase YcfH 0.82 OH686_14125 DNA-formamidopyrimidine glycosylase low > 80
Pseudomonas putida KT2440 0.85 PP_1967 tRNA D-aminoacylase 0.88 PP_5125 Formamidopyrimidine-DNA glycosylase low > 96
Pseudomonas fluorescens FW300-N1B4 0.84 Pf1N1B4_420 Putative deoxyribonuclease YcfH 0.92 Pf1N1B4_2309 Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) low > 87
Pseudomonas stutzeri RCH2 0.84 Psest_1696 hydrolase, TatD family 0.76 Psest_0239 formamidopyrimidine-DNA glycosylase (fpg) low > 67
Kangiella aquimarina DSM 16071 0.56 B158DRAFT_1745 hydrolase, TatD family 0.50 B158DRAFT_0778 DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18) low > 40
Shewanella amazonensis SB2B 0.53 Sama_2040 TatD family hydrolase (RefSeq) 0.58 Sama_0117 formamidopyrimidine-DNA glycosylase (RefSeq) low > 62
Shewanella loihica PV-4 0.51 Shew_1582 TatD family hydrolase (RefSeq) 0.56 Shew_3690 formamidopyrimidine-DNA glycosylase (RefSeq) low > 60
Shewanella oneidensis MR-1 0.50 SO2610 hydrolase, TatD family (NCBI ptt file) 0.56 SO4726 mutM formamidopyrimidine-DNA glycosylase (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.50 Shewana3_1769 TatD family hydrolase (RefSeq) 0.54 Shewana3_4084 formamidopyrimidine-DNA glycosylase (RefSeq) low > 73
Alteromonas macleodii MIT1002 0.50 MIT1002_01740 putative deoxyribonuclease YcfH 0.60 MIT1002_00057 Formamidopyrimidine-DNA glycosylase 0.46 20
Serratia liquefaciens MT49 0.49 IAI46_09825 metal-dependent hydrolase 0.57 IAI46_24810 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 86
Vibrio cholerae E7946 ATCC 55056 0.49 CSW01_10060 YchF/TatD family DNA exonuclease 0.57 CSW01_01175 formamidopyrimidine-DNA glycosylase low > 62
Dickeya dianthicola 67-19 0.49 HGI48_RS13150 metal-dependent hydrolase 0.55 HGI48_RS00715 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 71
Dickeya dianthicola ME23 0.49 DZA65_RS13620 metal-dependent hydrolase 0.55 DZA65_RS00770 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 75
Rahnella sp. WP5 0.49 EX31_RS24470 metal-dependent hydrolase 0.55 EX31_RS14455 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 89
Dickeya dadantii 3937 0.49 DDA3937_RS13085 metal-dependent hydrolase 0.55 DDA3937_RS20500 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 74
Erwinia tracheiphila SCR3 0.48 LU632_RS14785 metal-dependent hydrolase 0.57 LU632_RS21975 mutM bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 74
Cupriavidus basilensis FW507-4G11 0.47 RR42_RS10885 DNAase 0.50 RR42_RS02040 formamidopyrimidine-DNA glycosylase low > 128
Dechlorosoma suillum PS 0.47 Dsui_2652 hydrolase, TatD family 0.43 Dsui_1031 formamidopyrimidine-DNA glycosylase Fpg low > 51
Pectobacterium carotovorum WPP14 0.47 HER17_RS08685 metal-dependent hydrolase 0.55 HER17_RS20815 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 75
Pantoea sp. MT58 0.47 IAI47_12035 metal-dependent hydrolase 0.58 IAI47_00635 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 76
Ralstonia solanacearum GMI1000 0.47 RS_RS09020 TatD family deoxyribonuclease 0.50 RS_RS01975 formamidopyrimidine-DNA glycosylase low > 80
Klebsiella michiganensis M5al 0.47 BWI76_RS11125 metal-dependent hydrolase 0.55 BWI76_RS27330 DNA-formamidopyrimidine glycosylase low > 92
Ralstonia sp. UNC404CL21Col 0.46 ABZR87_RS12460 TatD family hydrolase 0.47 ABZR87_RS07015 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 80
Ralstonia solanacearum PSI07 0.46 RPSI07_RS16465 TatD family deoxyribonuclease 0.50 RPSI07_RS22175 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 81
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.46 GFF3382 Putative deoxyribonuclease YcfH 0.56 GFF374 Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) low > 78
Herbaspirillum seropedicae SmR1 0.46 HSERO_RS12995 DNAase 0.51 HSERO_RS19545 formamidopyrimidine-DNA glycosylase low > 78
Acinetobacter radioresistens SK82 0.45 MPMX26_01224 putative metal-dependent hydrolase YcfH 0.51 MPMX26_02486 Formamidopyrimidine-DNA glycosylase low > 36
Ralstonia solanacearum IBSBF1503 0.45 RALBFv3_RS01010 TatD family deoxyribonuclease 0.49 RALBFv3_RS11125 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 76
Ralstonia solanacearum UW163 0.45 UW163_RS14320 TatD family deoxyribonuclease 0.49 UW163_RS02455 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.45 OHPLBJKB_02566 putative metal-dependent hydrolase YcfH 0.57 OHPLBJKB_00067 Formamidopyrimidine-DNA glycosylase low > 73
Escherichia coli ECOR38 0.45 HEPCGN_23940 ycfH metal-dependent hydrolase 0.57 HEPCGN_14460 mutM bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 87
Escherichia coli Nissle 1917 0.45 ECOLIN_RS06350 metal-dependent hydrolase 0.57 ECOLIN_RS20715 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 55
Escherichia coli ECOR27 0.45 NOLOHH_21070 ycfH metal-dependent hydrolase 0.57 NOLOHH_07515 mutM bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase — —
Escherichia coli BW25113 0.45 b1100 ycfH predicted metallodependent hydrolase (NCBI) 0.57 b3635 mutM formamidopyrimidine-DNA glycosylase (NCBI) low > 76
Escherichia coli ECRC102 0.45 NIAGMN_24290 ycfH metal-dependent hydrolase 0.57 NIAGMN_13395 Formamidopyrimidine-DNA glycosylase — —
Escherichia coli ECRC62 0.45 BNILDI_19230 ycfH metal-dependent hydrolase 0.57 BNILDI_04000 mutM bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 75
Escherichia coli ECRC98 0.45 JDDGAC_07200 ycfH metal-dependent hydrolase 0.57 JDDGAC_19260 Formamidopyrimidine-DNA glycosylase low > 86
Escherichia coli ECRC100 0.45 OKFHMN_03540 ycfH metal-dependent hydrolase 0.57 OKFHMN_15635 Formamidopyrimidine-DNA glycosylase low > 80
Escherichia coli ECRC101 0.45 MCAODC_22900 ycfH metal-dependent hydrolase 0.57 MCAODC_06145 Formamidopyrimidine-DNA glycosylase low > 87
Escherichia coli BL21 0.45 ECD_01096 putative DNase 0.57 ECD_03492 formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase low > 61
Escherichia coli ECRC99 0.45 KEDOAH_24215 ycfH metal-dependent hydrolase 0.57 KEDOAH_12515 Formamidopyrimidine-DNA glycosylase — —
Escherichia fergusonii Becca 0.45 EFB2_02875 putative metal-dependent hydrolase YcfH 0.57 EFB2_00178 Formamidopyrimidine-DNA glycosylase low > 86
Enterobacter sp. TBS_079 0.45 MPMX20_01780 putative metal-dependent hydrolase YcfH 0.55 MPMX20_00100 Formamidopyrimidine-DNA glycosylase low > 85
Enterobacter asburiae PDN3 0.44 EX28DRAFT_1829 hydrolase, TatD family 0.54 EX28DRAFT_3885 DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18) low > 76
Castellaniella sp019104865 MT123 0.44 ABCV34_RS03960 TatD family hydrolase 0.43 ABCV34_RS09265 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 48
Paraburkholderia bryophila 376MFSha3.1 0.43 H281DRAFT_00931 TatD DNase family protein 0.49 H281DRAFT_01934 DNA-(apurinic or apyrimidinic site) lyase low > 103
Azospirillum brasilense Sp245 0.42 AZOBR_RS08795 LuxR family transcriptional regulator 0.39 AZOBR_RS01270 5-hydroxymethyluracil DNA glycosylase low > 97
Paraburkholderia graminis OAS925 0.42 ABIE53_002166 TatD DNase family protein 0.50 ABIE53_000711 formamidopyrimidine-DNA glycosylase 0.37 71
Paraburkholderia sabiae LMG 24235 0.42 QEN71_RS21805 TatD family hydrolase 0.48 QEN71_RS01720 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 153
Burkholderia phytofirmans PsJN 0.42 BPHYT_RS09640 DNAase 0.49 BPHYT_RS02870 formamidopyrimidine-DNA glycosylase low > 109
Variovorax sp. SCN45 0.42 GFF34 Uncharacterized metal-dependent hydrolase YcfH 0.42 GFF2353 Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) low > 127
Azospirillum sp. SherDot2 0.42 MPMX19_01469 putative metal-dependent hydrolase YcfH 0.36 MPMX19_02764 Formamidopyrimidine-DNA glycosylase low > 112
Magnetospirillum magneticum AMB-1 0.42 AMB_RS12295 TatD family deoxyribonuclease 0.36 AMB_RS03255 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 64
Variovorax sp. OAS795 0.41 ABID97_RS16000 TatD family hydrolase 0.39 ABID97_RS23725 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 91
Rhodopseudomonas palustris CGA009 0.41 TX73_014390 TatD family hydrolase 0.38 TX73_000435 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 86
Phaeobacter inhibens DSM 17395 0.40 PGA1_c07990 putative hydrolase, TatD family 0.42 PGA1_c36490 formamidopyrimidine-DNA glycosylase MutM low > 62
Bosea sp. OAE506 0.40 ABIE41_RS15945 TatD family hydrolase 0.33 ABIE41_RS04205 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 77
Sphingomonas koreensis DSMZ 15582 0.40 Ga0059261_0126 hydrolase, TatD family 0.36 Ga0059261_3586 DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18) low > 68
Hydrogenophaga sp. GW460-11-11-14-LB1 0.40 GFF4665 Putative deoxyribonuclease YcfH 0.37 GFF825 Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) low > 90
Rhodospirillum rubrum S1H 0.39 Rru_A1700 TatD-related deoxyribonuclease (NCBI) 0.38 Rru_A3799 DNA-formamidopyrimidine glycosylase (NCBI) low > 58
Sinorhizobium meliloti 1021 0.39 SMc01193 hypothetical protein 0.35 SMc01154 formamidopyrimidine-DNA glycosylase low > 103
Agrobacterium fabrum C58 0.37 Atu1495 hypothetical protein 0.36 Atu0321 formamidopyrimidine-DNA glycosylase low > 89
Rhizobium sp. OAE497 0.36 ABIE40_RS09480 TatD family hydrolase 0.35 ABIE40_RS01590 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 107
Dinoroseobacter shibae DFL-12 0.35 Dshi_0920 hydrolase, TatD family (RefSeq) 0.41 Dshi_3369 formamidopyrimidine-DNA glycosylase (RefSeq) low > 64
Brevundimonas sp. GW460-12-10-14-LB2 0.34 A4249_RS04755 TatD family hydrolase 0.39 A4249_RS14505 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase low > 48
Marinobacter adhaerens HP15 0.31 HP15_3420 hydrolase, TatD family 0.55 HP15_3493 formamidopyrimidine-DNA glycosylase low > 73
Synechococcus elongatus PCC 7942 0.30 Synpcc7942_1521 tatD Sec-independent protein translocase TatD 0.30 Synpcc7942_1323 fpg DNA-(apurinic or apyrimidinic site) lyase / Formamidopyrimidine-DNA glycosylase low > 38
Caulobacter crescentus NA1000 Δfur 0.29 CCNA_01898 Mg-dependent Dnase TatD 0.37 CCNA_03822 formamidopyrimidine-DNA glycosylase 0.67 38
Caulobacter crescentus NA1000 0.29 CCNA_01898 Mg-dependent Dnase TatD 0.37 CCNA_03822 formamidopyrimidine-DNA glycosylase low > 66
Mycobacterium tuberculosis H37Rv 0.25 Rv1008 Probable deoxyribonuclease TatD (YJJV protein) 0.28 Rv2924c Probable formamidopyrimidine-DNA glycosylase Fpg (FAPY-DNA glycosylase) low > 58

Not shown: 8 genomes with orthologs for Psyr_1655 only; 6 genomes with orthologs for Psyr_4761 only