Conservation of cofitness between Psyr_4404 and Psyr_3003 in Pseudomonas syringae pv. syringae B728a

84 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_4404 tRNA-U20-dihydrouridine synthase 1.0 Psyr_3003 [Acyl-carrier protein] phosphodiesterase 0.41 9
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_4404 tRNA-U20-dihydrouridine synthase 1.00 Psyr_3003 [Acyl-carrier protein] phosphodiesterase low > 86
Pseudomonas simiae WCS417 0.87 PS417_02950 tRNA-dihydrouridine synthase B 0.65 PS417_13085 FMN-dependent NADH-azoreductase low > 88
Pseudomonas fluorescens SBW25-INTG 0.87 PFLU_RS03025 tRNA dihydrouridine synthase DusB 0.66 PFLU_RS13725 FMN-dependent NADH-azoreductase low > 109
Pseudomonas fluorescens SBW25 0.87 PFLU_RS03025 tRNA dihydrouridine synthase DusB 0.66 PFLU_RS13725 FMN-dependent NADH-azoreductase low > 109
Pseudomonas fluorescens FW300-N2E3 0.86 AO353_13660 tRNA-dihydrouridine synthase B 0.71 AO353_25740 FMN-dependent NADH-azoreductase low > 101
Pseudomonas sp. DMC3 0.85 GFF3310 tRNA-dihydrouridine synthase B 0.65 GFF2694 FMN-dependent NADH-azoreductase 1 low > 89
Pseudomonas fluorescens FW300-N1B4 0.85 Pf1N1B4_1313 tRNA dihydrouridine synthase B (EC 1.-.-.-) 0.66 Pf1N1B4_4746 FMN-dependent NADH-azoreductase — —
Pseudomonas lactucae CFBP13502 0.85 GEMAOFIL_00822 tRNA-dihydrouridine synthase B 0.66 GEMAOFIL_03248 FMN-dependent NADH-azoreductase 1 low > 93
Pseudomonas sp. RS175 0.84 PFR28_05216 tRNA-dihydrouridine synthase B 0.64 PFR28_01693 FMN-dependent NADH-azoreductase 1 low > 88
Pseudomonas fluorescens GW456-L13 0.84 PfGW456L13_55 tRNA dihydrouridine synthase B (EC 1.-.-.-) 0.69 PfGW456L13_3020 FMN-dependent NADH-azoreductase low > 87
Pseudomonas fluorescens FW300-N2C3 0.84 AO356_08215 tRNA-dihydrouridine synthase B 0.62 AO356_27755 FMN-dependent NADH-azoreductase low > 104
Pseudomonas fluorescens FW300-N2E2 0.84 Pf6N2E2_3517 tRNA dihydrouridine synthase B (EC 1.-.-.-) 0.63 Pf6N2E2_777 FMN-dependent NADH-azoreductase low > 103
Pseudomonas sp. SVBP6 0.83 COO64_RS18315 dusB tRNA dihydrouridine synthase DusB 0.72 COO64_RS14745 FMN-dependent NADH-azoreductase low > 93
Pseudomonas sp. BP01 0.81 JOY50_RS17635 dusB tRNA dihydrouridine synthase DusB 0.68 JOY50_RS05755 FMN-dependent NADH-azoreductase — —
Pseudomonas sp. S08-1 0.81 OH686_07610 tRNA-dihydrouridine synthase DusB 0.36 OH686_05440 FMN-dependent NADH-azoreductase low > 80
Pseudomonas stutzeri RCH2 0.81 Psest_1016 putative TIM-barrel protein, nifR3 family 0.20 Psest_2740 Acyl carrier protein phosphodiesterase low > 67
Pseudomonas putida KT2440 0.81 PP_4820 tRNA-dihydrouridine synthase B 0.67 PP_2866 FMN-dependent NADH-azoreductase 1 low > 96
Pseudomonas segetis P6 0.80 MPMX49_04106 tRNA-dihydrouridine synthase B 0.32 MPMX49_03252 FMN-dependent NADH-azoreductase low > 75
Pseudomonas aeruginosa PA14 0.77 IKLFDK_29300 tRNA dihydrouridine synthase DusB 0.60 IKLFDK_09580 FMN-dependent NADH-azoreductase AzoR2 low > 100
Marinobacter adhaerens HP15 0.69 HP15_3225 tRNA-dihydrouridine synthase B 0.23 HP15_1438 NAD(P)H dehydrogenase (quinone) low > 73
Dechlorosoma suillum PS 0.62 Dsui_1593 putative TIM-barrel protein, nifR3 family 0.32 Dsui_2071 acyl carrier protein phosphodiesterase — —
Ralstonia solanacearum PSI07 0.61 RPSI07_RS21520 tRNA dihydrouridine synthase DusB 0.43 RPSI07_RS05795 azoreductase low > 81
Ralstonia solanacearum GMI1000 0.61 RS_RS02515 tRNA dihydrouridine synthase DusB 0.43 RS_RS23210 FMN-dependent NADH-azoreductase low > 80
Alteromonas macleodii MIT1002 0.61 MIT1002_03957 putative tRNA-dihydrouridine synthase 0.27 MIT1002_02264 FMN-dependent NADH-azoreductase low > 70
Ralstonia sp. UNC404CL21Col 0.61 ABZR87_RS07650 tRNA dihydrouridine synthase DusB 0.42 ABZR87_RS18785 FMN-dependent NADH-azoreductase low > 80
Herbaspirillum seropedicae SmR1 0.61 HSERO_RS02050 tRNA-dihydrouridine synthase B 0.41 HSERO_RS22420 azoreductase low > 78
Ralstonia solanacearum IBSBF1503 0.60 RALBFv3_RS11695 tRNA dihydrouridine synthase DusB 0.47 RALBFv3_RS17765 azoreductase low > 76
Ralstonia solanacearum UW163 0.60 UW163_RS01890 tRNA dihydrouridine synthase DusB 0.47 UW163_RS21375 azoreductase — —
Paraburkholderia sabiae LMG 24235 0.60 QEN71_RS26770 tRNA dihydrouridine synthase DusB 0.32 QEN71_RS27580 NAD(P)H-dependent oxidoreductase low > 153
Paraburkholderia bryophila 376MFSha3.1 0.60 H281DRAFT_04249 tRNA-U20-dihydrouridine synthase 0.31 H281DRAFT_05709 FMN-dependent NADH-azoreductase low > 103
Cupriavidus basilensis FW507-4G11 0.59 RR42_RS02730 tRNA-dihydrouridine synthase B 0.48 RR42_RS10870 FMN-dependent NADH-azoreductase low > 128
Lysobacter sp. OAE881 0.59 ABIE51_RS16450 tRNA dihydrouridine synthase DusB 0.47 ABIE51_RS12115 NAD(P)H-dependent oxidoreductase low > 62
Dyella japonica UNC79MFTsu3.2 0.58 ABZR86_RS11525 tRNA dihydrouridine synthase DusB 0.45 ABZR86_RS14210 FMN-dependent NADH-azoreductase low > 74
Paraburkholderia graminis OAS925 0.58 ABIE53_003489 tRNA-dihydrouridine synthase B 0.31 ABIE53_003646 FMN-dependent NADH-azoreductase low > 113
Rhodanobacter denitrificans FW104-10B01 0.58 LRK54_RS12140 tRNA dihydrouridine synthase DusB 0.44 LRK54_RS00840 FMN-dependent NADH-azoreductase low > 59
Rhodanobacter denitrificans MT42 0.58 LRK55_RS11875 tRNA dihydrouridine synthase DusB 0.44 LRK55_RS00615 FMN-dependent NADH-azoreductase low > 63
Burkholderia phytofirmans PsJN 0.58 BPHYT_RS16585 tRNA-dihydrouridine synthase B 0.31 BPHYT_RS17420 FMN-dependent NADH-azoreductase low > 109
Rhodanobacter sp. FW510-T8 0.58 OKGIIK_11770 dusB tRNA dihydrouridine synthase DusB 0.43 OKGIIK_06380 azoR FMN-dependent NADH-azoreductase low > 53
Erwinia amylovora T8 0.57 OLJFJH_06855 tRNA dihydrouridine synthase DusB 0.34 OLJFJH_13815 FMN-dependent NADH-azoreductase low > 58
Shewanella amazonensis SB2B 0.56 Sama_3225 tRNA-dihydrouridine synthase B (RefSeq) 0.29 Sama_3398 (Acyl-carrier-protein) phosphodiesterase (RefSeq) low > 62
Rahnella sp. WP5 0.56 EX31_RS12180 tRNA dihydrouridine synthase DusB 0.33 EX31_RS06490 FMN-dependent NADH-azoreductase low > 89
Escherichia coli ECRC102 0.56 NIAGMN_15445 dusB tRNA dihydrouridine synthase DusB 0.34 NIAGMN_25870 azoR FMN-dependent NADH-azoreductase low > 80
Escherichia coli BL21 0.56 ECD_03118 tRNA-dihydrouridine synthase B 0.34 ECD_01367 NADH-azoreductase, FMN-dependent — —
Escherichia fergusonii Becca 0.56 EFB2_00564 tRNA-dihydrouridine synthase B 0.34 EFB2_02566 FMN-dependent NADH-azoreductase low > 86
Dickeya dadantii 3937 0.56 DDA3937_RS01375 tRNA dihydrouridine synthase DusB 0.41 DDA3937_RS16415 NAD(P)H-dependent oxidoreductase low > 74
Escherichia coli ECOR38 0.56 HEPCGN_16505 dusB tRNA dihydrouridine synthase DusB 0.34 HEPCGN_26105 azoR FMN-dependent NADH-azoreductase low > 88
Escherichia coli ECRC101 0.56 MCAODC_08205 dusB tRNA dihydrouridine synthase DusB 0.34 MCAODC_16200 azoR FMN-dependent NADH-azoreductase low > 88
Escherichia coli ECOR27 0.56 NOLOHH_09470 dusB tRNA dihydrouridine synthase DusB 0.34 NOLOHH_19395 azoR FMN-dependent NADH-azoreductase — —
Escherichia coli ECRC100 0.56 OKFHMN_17685 dusB tRNA dihydrouridine synthase DusB 0.34 OKFHMN_01735 azoR FMN-dependent NADH-azoreductase — —
Variovorax sp. OAS795 0.56 ABID97_RS24735 tRNA dihydrouridine synthase DusB 0.42 ABID97_RS15550 NAD(P)H-dependent oxidoreductase low > 91
Escherichia coli ECRC62 0.56 BNILDI_02050 dusB tRNA dihydrouridine synthase DusB 0.34 BNILDI_17850 azoR FMN-dependent NADH-azoreductase low > 75
Escherichia coli Nissle 1917 0.56 ECOLIN_RS18725 tRNA dihydrouridine synthase DusB 0.34 ECOLIN_RS08175 FMN-dependent NADH-azoreductase — —
Escherichia coli BW25113 0.56 b3260 dusB tRNA-dihydrouridine synthase B (NCBI) 0.34 b1412 azoR acyl carrier protein phosphodiesterase (NCBI) low > 76
Enterobacter sp. TBS_079 0.56 MPMX20_04169 tRNA-dihydrouridine synthase B 0.34 MPMX20_02188 FMN-dependent NADH-azoreductase low > 85
Dickeya dianthicola 67-19 0.56 HGI48_RS01295 tRNA dihydrouridine synthase DusB 0.40 HGI48_RS04005 FMN-dependent NADH-azoreductase low > 71
Klebsiella michiganensis M5al 0.56 BWI76_RS25565 tRNA dihydrouridine synthase DusB 0.35 BWI76_RS13160 azoreductase — —
Dickeya dianthicola ME23 0.55 DZA65_RS01355 tRNA dihydrouridine synthase DusB 0.33 DZA65_RS12805 FMN-dependent NADH-azoreductase low > 75
Erwinia tracheiphila HP pepo 2.2 0.55 IJEDHG_13500 dusB tRNA dihydrouridine synthase DusB 0.35 IJEDHG_23635 FMN-dependent NADH-azoreductase low > 61
Variovorax sp. SCN45 0.55 GFF2144 tRNA-dihydrouridine synthase DusB 0.45 GFF1283 FMN-dependent NADH-azoreductase (EC 1.7.1.6) low > 127
Klebsiella pneumoniae MKP103 0.55 KDGMDA_06325 tRNA dihydrouridine synthase DusB 0.39 KDGMDA_22375 FMN-dependent NADH-azoreductase low > 95
Pectobacterium carotovorum WPP14 0.55 HER17_RS20235 tRNA dihydrouridine synthase DusB 0.39 HER17_RS06200 FMN-dependent NADH-azoreductase low > 75
Shewanella oneidensis MR-1 0.55 SO0394 conserved hypothetical protein (NCBI ptt file) 0.28 SO4396 acpD acyl carrier protein phosphodiesterase (NCBI ptt file) low > 76
Serratia liquefaciens MT49 0.55 IAI46_22775 tRNA dihydrouridine synthase DusB 0.35 IAI46_13335 FMN-dependent NADH-azoreductase low > 86
Shewanella sp. ANA-3 0.54 Shewana3_0399 nifR3 family TIM-barrel protein (RefSeq) 0.28 Shewana3_0316 azoreductase (RefSeq) low > 73
Enterobacter asburiae PDN3 0.54 EX28DRAFT_3313 putative TIM-barrel protein, nifR3 family 0.37 EX28DRAFT_1427 Acyl carrier protein phosphodiesterase low > 76
Shewanella loihica PV-4 0.54 Shew_0330 nifR3 family TIM-barrel protein (RefSeq) 0.27 Shew_3529 azoreductase (RefSeq) low > 60
Pantoea agglomerans CFBP13505 P0401 0.53 PagCFBP13505_RS10980 tRNA dihydrouridine synthase DusB 0.32 PagCFBP13505_RS06640 FMN-dependent NADH-azoreductase low > 74
Pantoea sp. MT58 0.53 IAI47_02385 tRNA dihydrouridine synthase DusB 0.32 IAI47_09515 FMN-dependent NADH-azoreductase low > 76
Hydrogenophaga sp. GW460-11-11-14-LB1 0.53 GFF634 tRNA dihydrouridine synthase B (EC 1.-.-.-) 0.44 GFF669 FMN-dependent NADH-azoreductase low > 90
Acinetobacter baumannii LAC-4 0.52 RR41_RS04995 tRNA dihydrouridine synthase DusB 0.45 RR41_RS12815 NAD(P)H-dependent oxidoreductase low > 55
Acidovorax sp. GW101-3H11 0.52 Ac3H11_3996 tRNA dihydrouridine synthase B (EC 1.-.-.-) 0.41 Ac3H11_920 FMN-dependent NADH-azoreductase low > 79
Escherichia coli ECRC99 0.50 KEDOAH_10465 dusB tRNA dihydrouridine synthase DusB 0.34 KEDOAH_26705 azoR FMN-dependent NADH-azoreductase — —
Escherichia coli ECRC98 0.50 JDDGAC_21310 dusB tRNA dihydrouridine synthase DusB 0.34 JDDGAC_04225 azoR FMN-dependent NADH-azoreductase low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.49 OHPLBJKB_00445 putative tRNA-dihydrouridine synthase 0.34 OHPLBJKB_02302 FMN-dependent NADH-azoreductase low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.48 GFF2124 tRNA dihydrouridine synthase B (EC 1.-.-.-) 0.34 GFF2633 FMN-dependent NADH-azoreductase low > 78
Azospirillum sp. SherDot2 0.45 MPMX19_01110 tRNA-dihydrouridine synthase B 0.43 MPMX19_00596 FMN-dependent NADH-azoreductase 1 low > 112
Azospirillum brasilense Sp245 0.43 AZOBR_RS14420 tRNA-dihydrouridine synthase 0.41 AZOBR_RS05610 azoreductase low > 97
Agrobacterium fabrum C58 0.37 Atu1444 nitrogen regulation protein 0.28 Atu1208 acyl-carrier-protein phosphodiesterase low > 89
Sinorhizobium meliloti 1021 0.36 SMc01041 NIFR3-like protein 0.45 SMc01329 ACP phosphodiesterase low > 103
Rhizobium sp. OAE497 0.35 ABIE40_RS09080 tRNA dihydrouridine synthase DusB 0.28 ABIE40_RS08230 FMN-dependent NADH-azoreductase 0.55 33
Pedobacter sp. GW460-11-11-14-LB5 0.32 CA265_RS21125 tRNA dihydrouridine synthase DusB 0.29 CA265_RS09960 FMN-dependent NADH-azoreductase low > 88
Mucilaginibacter yixingensis YX-36 DSM 26809 0.31 ABZR88_RS22340 tRNA dihydrouridine synthase DusB 0.32 ABZR88_RS19750 FMN-dependent NADH-azoreductase low > 71
Echinicola vietnamensis KMM 6221, DSM 17526 0.31 Echvi_1531 putative TIM-barrel protein, nifR3 family 0.19 Echvi_1067 Acyl carrier protein phosphodiesterase low > 79
Desulfovibrio vulgaris Hildenborough JW710 0.21 DVU0661 dihydrouridine synthase family protein (TIGR) 0.19 DVU2548 acpD acyl carrier protein phosphodiesterase (TIGR) low > 55

Not shown: 27 genomes with orthologs for Psyr_4404 only; 2 genomes with orthologs for Psyr_3003 only