| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas fluorescens FW300-N2E2 | 1.0 | Pf6N2E2_4412 | | Ammonium transporter | 1.0 | Pf6N2E2_3826 | | Nitrogen regulation protein NR(I) | 0.57 | 6 |
| Pseudomonas fluorescens FW300-N2C3 | 1.00 | AO356_12705 | | ammonia channel protein | 1.00 | AO356_09730 | | nitrogen regulation protein NR(I) | 0.54 | 7 |
| Pseudomonas sp. RS175 | 0.99 | PFR28_04382 | | Ammonia channel | 0.99 | PFR28_04944 | | DNA-binding transcriptional regulator NtrC | low | > 88 |
| Pseudomonas fluorescens FW300-N1B4 | 0.91 | Pf1N1B4_2167 | | Ammonium transporter | 0.96 | Pf1N1B4_1611 | | Nitrogen regulation protein NR(I) | 0.64 | 1 |
| Pseudomonas fluorescens GW456-L13 | 0.91 | PfGW456L13_838 | | Ammonium transporter | 0.95 | PfGW456L13_347 | | Nitrogen regulation protein NR(I) | 0.75 | 3 |
| Pseudomonas fluorescens SBW25 | 0.90 | PFLU_RS29300 | | ammonium transporter | 0.96 | PFLU_RS01685 | | nitrogen regulation protein NR(I) | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.90 | PFLU_RS29300 | | ammonium transporter | 0.96 | PFLU_RS01685 | | nitrogen regulation protein NR(I) | 0.65 | 3 |
| Pseudomonas simiae WCS417 | 0.88 | PS417_27615 | | ammonia channel protein | 0.96 | PS417_01635 | | nitrogen regulation protein NR(I) | 0.63 | 1 |
| Pseudomonas fluorescens FW300-N2E3 | 0.87 | AO353_09070 | | ammonia channel protein | 0.96 | AO353_12145 | | nitrogen regulation protein NR(I) | 0.62 | 4 |
| Pseudomonas sp. S08-1 | 0.87 | OH686_13760 | | Ammonium transporter | 0.93 | OH686_10640 | | nitrogen regulation protein NR(I) | low | > 80 |
| Pseudomonas syringae pv. syringae B728a | 0.86 | Psyr_0189 | | ammonium transporter | 0.95 | Psyr_4822 | | Helix-turn-helix, Fis-type:Nitrogen regulation protein NR(I) | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.86 | Psyr_0189 | | ammonium transporter | 0.95 | Psyr_4822 | | Helix-turn-helix, Fis-type:Nitrogen regulation protein NR(I) | — | — |
| Pseudomonas stutzeri RCH2 | 0.84 | Psest_3772 | | ammonium transporter | 0.85 | Psest_3932 | | nitrogen regulation protein NR(I) | 0.24 | 5 |
| Pseudomonas putida KT2440 | 0.83 | PP_5233 | | ammonium transporter AmtB | 0.93 | PP_5048 | | two-component system DNA-binding transcriptional dual regulator GlnL/GlnG | 0.68 | 2 |
| Dyella japonica UNC79MFTsu3.2 | 0.71 | ABZR86_RS09495 | | ammonium transporter | 0.42 | ABZR86_RS15515 | | nitrogen regulation protein NR(I) | 0.54 | 5 |
| Paraburkholderia sabiae LMG 24235 | 0.59 | QEN71_RS01405 | | ammonium transporter | 0.56 | QEN71_RS05675 | | nitrogen regulation protein NR(I) | low | > 153 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.57 | H281DRAFT_02012 | | ammonium transporter | 0.55 | H281DRAFT_00454 | | nitrogen metabolism transcriptional regulator, NtrC, Fis family | low | > 103 |
| Rhodospirillum rubrum S1H | 0.57 | Rru_A1129 | | Ammonium transporter (NCBI) | 0.40 | Rru_A1678 | | Nitrogen Metabolism Transcriptional Regulator, NtrC, Fis Family (NCBI) | 0.50 | 21 |
| Paraburkholderia graminis OAS925 | 0.57 | ABIE53_000655 | | Amt family ammonium transporter | 0.55 | ABIE53_002804 | | two-component system nitrogen regulation response regulator GlnG | low | > 113 |
| Azospirillum brasilense Sp245 | 0.57 | AZOBR_RS00845 | | ammonia channel protein | 0.41 | AZOBR_RS14430 | | chemotaxis protein CheY | low | > 97 |
| Burkholderia phytofirmans PsJN | 0.57 | BPHYT_RS02550 | | ammonia channel protein | 0.55 | BPHYT_RS12935 | | chemotaxis protein CheY | 0.36 | 2 |
| Azospirillum sp. SherDot2 | 0.56 | MPMX19_02223 | | Ammonia channel | 0.40 | MPMX19_01112 | | DNA-binding transcriptional regulator NtrC | — | — |
| Magnetospirillum magneticum AMB-1 | 0.56 | AMB_RS00080 | | ammonium transporter | 0.40 | AMB_RS11950 | | nitrogen regulation protein NR(I) | — | — |
| Ralstonia solanacearum PSI07 | 0.53 | RPSI07_RS22460 | | ammonia channel protein | 0.58 | RPSI07_RS17815 | | nitrogen regulation protein NR(I) | low | > 81 |
| Herbaspirillum seropedicae SmR1 | 0.53 | HSERO_RS00425 | | ammonia channel protein | 0.59 | HSERO_RS15680 | | chemotaxis protein CheY | 0.44 | 28 |
| Ralstonia solanacearum GMI1000 | 0.53 | RS_RS01690 | | ammonium transporter | 0.59 | RS_RS06320 | | nitrogen regulation protein NR(I) | — | — |
| Ralstonia solanacearum UW163 | 0.53 | UW163_RS02730 | | ammonia channel protein | 0.59 | UW163_RS13000 | | nitrogen regulation protein NR(I) | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.53 | RALBFv3_RS10850 | | ammonia channel protein | 0.59 | RALBFv3_RS15540 | | nitrogen regulation protein NR(I) | — | — |
| Ralstonia sp. UNC404CL21Col | 0.52 | ABZR87_RS06700 | | ammonium transporter | 0.58 | ABZR87_RS11070 | | nitrogen regulation protein NR(I) | 0.58 | 1 |
| Cupriavidus basilensis FW507-4G11 | 0.52 | RR42_RS01760 | | ammonia channel protein | 0.58 | RR42_RS12980 | | chemotaxis protein CheY | 0.46 | 2 |
| Bosea sp. OAE506 | 0.51 | ABIE41_RS04755 | | ammonium transporter | 0.38 | ABIE41_RS16785 | | nitrogen regulation protein NR(I) | low | > 77 |
| Shewanella sp. ANA-3 | 0.51 | Shewana3_0778 | | ammonium transporter (RefSeq) | 0.67 | Shewana3_0258 | | nitrogen metabolism transcriptional regulator, NtrC, Fis family (RefSeq) | low | > 73 |
| Acinetobacter radioresistens SK82 | 0.51 | MPMX26_00150 | | Ammonia channel | 0.67 | MPMX26_01292 | | DNA-binding transcriptional regulator NtrC | 0.60 | 6 |
| Variovorax sp. SCN45 | 0.51 | GFF5119 | | Ammonium transporter | 0.56 | GFF3066 | | Nitrogen regulation protein NR(I), GlnG (=NtrC) | — | — |
| Dechlorosoma suillum PS | 0.50 | Dsui_0763 | | ammonium transporter | 0.60 | Dsui_1051 | | nitrogen regulation protein NR(I) | low | > 51 |
| Sphingomonas koreensis DSMZ 15582 | 0.50 | Ga0059261_2256 | | ammonium transporter | 0.38 | Ga0059261_0137 | | nitrogen regulation protein NR(I) | low | > 68 |
| Rhodopseudomonas palustris CGA009 | 0.50 | TX73_001435 | | ammonium transporter | 0.38 | TX73_013420 | | nitrogen regulation protein NR(I) | low | > 86 |
| Rhizobium sp. OAE497 | 0.49 | ABIE40_RS18420 | | ammonium transporter | 0.40 | ABIE40_RS09090 | | nitrogen regulation protein NR(I) | low | > 107 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.49 | Xcc-8004.249.1 | | Ammonium transporter | 0.47 | Xcc-8004.252.1 | | Nitrogen regulation protein NtrC | low | > 74 |
| Erwinia tracheiphila SCR3 | 0.49 | LU632_RS18270 | amtB | ammonium transporter AmtB | 0.66 | LU632_RS22135 | glnG | nitrogen regulation protein NR(I) | 0.68 | 2 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.49 | GFF1922 | | Ammonium transporter | 0.55 | GFF5269 | | Nitrogen regulation protein NR(I) | low | > 90 |
| Variovorax sp. OAS795 | 0.49 | ABID97_RS03635 | | ammonium transporter | 0.56 | ABID97_RS09945 | | nitrogen regulation protein NR(I) | low | > 91 |
| Bacteroides ovatus ATCC 8483 | 0.48 | BACOVA_03766 | | ammonium transporter | 0.31 | BACOVA_01571 | | Sigma-54 interaction domain protein | low | > 94 |
| Serratia liquefaciens MT49 | 0.48 | IAI46_05085 | | ammonium transporter AmtB | 0.67 | IAI46_24960 | | nitrogen regulation protein NR(I) | low | > 86 |
| Pantoea sp. MT58 | 0.48 | IAI47_14580 | | ammonium transporter AmtB | 0.67 | IAI47_00450 | | nitrogen regulation protein NR(I) | low | > 76 |
| Sinorhizobium meliloti 1021 | 0.48 | SMc03807 | | ammonium transporter | 0.40 | SMc01043 | | nitrogen assimilation regulatory protein | 0.36 | 4 |
| Lysobacter sp. OAE881 | 0.48 | ABIE51_RS01435 | | ammonium transporter | 0.46 | ABIE51_RS01360 | | nitrogen regulation protein NR(I) | low | > 62 |
| Pectobacterium carotovorum WPP14 | 0.47 | HER17_RS15785 | | ammonium transporter AmtB | 0.66 | HER17_RS21440 | | nitrogen regulation protein NR(I) | low | > 75 |
| Caulobacter crescentus NA1000 | 0.47 | CCNA_01399 | | ammonium transporter/methylammonium transporter | 0.33 | CCNA_01815 | | nitrogen assimilation regulatory protein NtrC | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.47 | CCNA_01399 | | ammonium transporter/methylammonium transporter | 0.33 | CCNA_01815 | | nitrogen assimilation regulatory protein NtrC | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.46 | GFF4368 | | Ammonium transporter | 0.67 | GFF2220 | | Nitrogen regulation protein NR(I) | low | > 78 |
| Klebsiella michiganensis M5al | 0.46 | BWI76_RS06605 | | ammonium transporter | 0.66 | BWI76_RS00385 | | nitrogen assimilation regulatory protein | 0.58 | 1 |
| Escherichia fergusonii Becca | 0.46 | EFB2_03606 | | Ammonia channel | 0.67 | EFB2_04748 | | DNA-binding transcriptional regulator NtrC | low | > 86 |
| Agrobacterium fabrum C58 | 0.46 | Atu2758 | | ammonium transporter | 0.40 | Atu1446 | | two component response regulator | 0.22 | 68 |
| Escherichia coli Nissle 1917 | 0.46 | ECOLIN_RS02700 | | ammonium transporter AmtB | 0.67 | ECOLIN_RS22295 | | nitrogen regulation protein NR(I) | low | > 55 |
| Escherichia coli ECRC101 | 0.45 | MCAODC_27485 | amtB | ammonium transporter AmtB | 0.67 | MCAODC_04610 | glnG | nitrogen regulation protein NR(I) | low | > 87 |
| Escherichia coli ECRC100 | 0.45 | OKFHMN_08260 | amtB | ammonium transporter AmtB | 0.67 | OKFHMN_14110 | glnG | nitrogen regulation protein NR(I) | low | > 80 |
| Escherichia coli BL21 | 0.45 | ECD_00403 | | ammonium transporter | 0.67 | ECD_03753 | | fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator/sigma54 interaction protein | low | > 61 |
| Escherichia coli ECRC102 | 0.45 | NIAGMN_06315 | amtB | ammonium transporter AmtB | 0.67 | NIAGMN_11865 | glnG | nitrogen regulation protein NR(I) | — | — |
| Escherichia coli ECRC99 | 0.45 | KEDOAH_19705 | amtB | ammonium transporter AmtB | 0.67 | KEDOAH_14040 | glnG | nitrogen regulation protein NR(I) | — | — |
| Escherichia coli BW25113 | 0.45 | b0451 | amtB | ammonium transporter (NCBI) | 0.67 | b3868 | glnG | fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator/sigma54 interaction protein (NCBI) | 0.40 | 2 |
| Escherichia coli ECOR38 | 0.45 | HEPCGN_06875 | amtB | ammonium transporter AmtB | 0.67 | HEPCGN_12740 | glnG | nitrogen regulation protein NR(I) | low | > 87 |
| Escherichia coli ECOR27 | 0.45 | NOLOHH_01195 | amtB | ammonium transporter AmtB | 0.67 | NOLOHH_06240 | glnG | nitrogen regulation protein NR(I) | low | > 75 |
| Escherichia coli ECRC62 | 0.45 | BNILDI_22610 | amtB | ammonium transporter AmtB | 0.67 | BNILDI_05290 | glnG | nitrogen regulation protein NR(I) | low | > 75 |
| Enterobacter sp. TBS_079 | 0.45 | MPMX20_01043 | | Ammonia channel | 0.67 | MPMX20_04597 | | DNA-binding transcriptional regulator NtrC | 0.72 | 8 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.45 | OHPLBJKB_03222 | | Ammonia channel | 0.67 | OHPLBJKB_04184 | | DNA-binding transcriptional regulator NtrC | low | > 73 |
| Escherichia coli ECRC98 | 0.45 | JDDGAC_11915 | amtB | ammonium transporter AmtB | 0.67 | JDDGAC_17735 | glnG | nitrogen regulation protein NR(I) | — | — |
| Enterobacter asburiae PDN3 | 0.45 | EX28DRAFT_2518 | | ammonium transporter | 0.67 | EX28DRAFT_4350 | | nitrogen regulation protein NR(I) | low | > 76 |
| Rhodanobacter sp. FW510-T8 | 0.45 | OKGIIK_14925 | | Ammonium transporter | 0.43 | OKGIIK_14465 | ntrC | nitrogen regulation protein NR(I) | — | — |
| Rhodanobacter denitrificans MT42 | 0.44 | LRK55_RS07860 | | ammonium transporter | 0.45 | LRK55_RS07730 | | nitrogen regulation protein NR(I) | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.44 | LRK54_RS08110 | | ammonium transporter | 0.45 | LRK54_RS07980 | | nitrogen regulation protein NR(I) | low | > 59 |
| Rahnella sp. WP5 | 0.44 | EX31_RS22320 | | ammonium transporter AmtB | 0.67 | EX31_RS15880 | | nitrogen regulation protein NR(I) | low | > 89 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.43 | A4249_RS09990 | | ammonium transporter | 0.31 | A4249_RS09115 | | sigma-54 dependent transcriptional regulator | low | > 48 |
| Dickeya dianthicola 67-19 | 0.43 | HGI48_RS05745 | | ammonium transporter AmtB | 0.66 | HGI48_RS21235 | | nitrogen regulation protein NR(I) | low | > 71 |
| Dickeya dianthicola ME23 | 0.43 | DZA65_RS06070 | | ammonium transporter AmtB | 0.66 | DZA65_RS22210 | | nitrogen regulation protein NR(I) | low | > 75 |
| Dickeya dadantii 3937 | 0.42 | DDA3937_RS05700 | | ammonium transporter AmtB | 0.67 | DDA3937_RS00125 | | nitrogen regulation protein NR(I) | low | > 74 |
| Phaeobacter inhibens DSM 17395 | 0.42 | PGA1_c14730 | | ammonia channel | 0.29 | PGA1_c14810 | | nitrogen assimilation regulatory protein NtrX | — | — |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.41 | DVU1231 | amt | ammonium transporter (TIGR) | 0.37 | DVU0110 | ntrC | sigma-54 dependent transcriptional regulator/response regulator (TIGR) | 0.54 | 48 |
| Desulfovibrio vulgaris Miyazaki F | 0.38 | DvMF_0866 | | ammonium transporter (RefSeq) | 0.36 | DvMF_1993 | | two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) | low | > 51 |
| Castellaniella sp019104865 MT123 | 0.37 | ABCV34_RS04770 | | ammonium transporter | 0.49 | ABCV34_RS03540 | | nitrogen regulation protein NR(I) | low | > 48 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.35 | ABZR88_RS18240 | | ammonium transporter | 0.31 | ABZR88_RS12650 | | sigma-54 dependent transcriptional regulator | low | > 71 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.22 | BT0544 | | ammonium transporter (NCBI ptt file) | 0.31 | BT2433 | | two-component system response regulator (NCBI ptt file) | low | > 81 |
Not shown: 8 genomes with orthologs for Pf6N2E2_4412 only; 11 genomes with orthologs for Pf6N2E2_3826 only