| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas fluorescens FW300-N2E2 | 1.0 | Pf6N2E2_5159 | | glutamyl-Q-tRNA synthetase | 1.0 | Pf6N2E2_3606 | | 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-) | 0.32 | 10 |
| Pseudomonas fluorescens FW300-N2C3 | 0.98 | AO356_16090 | | glutamyl-Q tRNA(Asp) ligase | 0.99 | AO356_08605 | | 23S rRNA methyltransferase | low | > 104 |
| Pseudomonas sp. RS175 | 0.91 | PFR28_03715 | | Glutamyl-Q tRNA(Asp) synthetase | 0.95 | PFR28_05131 | | '23S rRNA (guanosine-2'-O-)-methyltransferase RlmB' transl_table=11 | low | > 88 |
| Pseudomonas fluorescens FW300-N1B4 | 0.88 | Pf1N1B4_2861 | | glutamyl-Q-tRNA synthetase | 0.91 | Pf1N1B4_1402 | | 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-) | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.88 | AO353_14415 | | glutamyl-Q tRNA(Asp) ligase | 0.91 | AO353_13205 | | 23S rRNA methyltransferase | low | > 101 |
| Pseudomonas fluorescens GW456-L13 | 0.87 | PfGW456L13_1527 | | glutamyl-Q-tRNA synthetase | 0.92 | PfGW456L13_143 | | 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-) | low | > 87 |
| Pseudomonas fluorescens SBW25 | 0.85 | PFLU_RS25720 | | tRNA glutamyl-Q(34) synthetase GluQRS | 0.97 | PFLU_RS02630 | | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | low | > 109 |
| Pseudomonas simiae WCS417 | 0.85 | PS417_23880 | | glutamyl-Q tRNA(Asp) ligase | 0.97 | PS417_02560 | | 23S rRNA methyltransferase | low | > 88 |
| Pseudomonas fluorescens SBW25-INTG | 0.85 | PFLU_RS25720 | | tRNA glutamyl-Q(34) synthetase GluQRS | 0.97 | PFLU_RS02630 | | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | low | > 109 |
| Pseudomonas sp. S08-1 | 0.83 | OH686_17275 | | glutamyl-queuosine tRNA(Asp) synthetase | 0.81 | OH686_15915 | | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase | low | > 80 |
| Pseudomonas stutzeri RCH2 | 0.78 | Psest_1002 | | glutamyl-queuosine tRNA(Asp) synthetase | 0.88 | Psest_0692 | | rRNA methylase, putative, group 3 | low | > 67 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.78 | Psyr_0834 | | Glutamyl-tRNA synthetase, class Ic | 0.91 | Psyr_0580 | | 23S rRNA Gm-2251 2'-O-methyltransferase | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.78 | Psyr_0834 | | Glutamyl-tRNA synthetase, class Ic | 0.91 | Psyr_0580 | | 23S rRNA Gm-2251 2'-O-methyltransferase | low | > 86 |
| Pseudomonas putida KT2440 | 0.74 | PP_4694 | | Glutamyl-Q tRNA(Asp) synthetase | 0.83 | PP_4879 | | 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB | low | > 96 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.48 | OHPLBJKB_03518 | | Glutamyl-Q tRNA(Asp) synthetase | 0.56 | OHPLBJKB_03862 | | '23S rRNA (guanosine-2'-O-)-methyltransferase RlmB' transl_table=11 | low | > 73 |
| Escherichia coli ECOR27 | 0.48 | NOLOHH_02695 | gluQRS | tRNA glutamyl-Q(34) synthetase GluQRS | 0.56 | NOLOHH_04480 | rlmB | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | low | > 75 |
| Escherichia coli BW25113 | 0.48 | b0144 | yadB | glutamyl-Q tRNA(Asp) synthetase (RefSeq) | 0.56 | b4180 | rlmB | 23S rRNA (Gm2251)-methyltransferase (NCBI) | low | > 76 |
| Escherichia coli BL21 | 0.48 | ECD_00143 | | glutamyl-Q tRNA(Asp) synthetase | 0.56 | ECD_04047 | | 23S rRNA mG2251 2'-O-ribose methyltransferase, SAM-dependent | low | > 61 |
| Escherichia coli ECOR38 | 0.47 | HEPCGN_08300 | gluQRS | tRNA glutamyl-Q(34) synthetase GluQRS | 0.56 | HEPCGN_10445 | rlmB | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | low | > 87 |
| Escherichia coli ECRC62 | 0.47 | BNILDI_08975 | gluQRS | tRNA glutamyl-Q(34) synthetase GluQRS | 0.56 | BNILDI_07010 | rlmB | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | low | > 75 |
| Escherichia fergusonii Becca | 0.47 | EFB2_03900 | | Glutamyl-Q tRNA(Asp) synthetase | 0.56 | EFB2_04355 | | 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB | low | > 86 |
| Escherichia coli ECRC101 | 0.47 | MCAODC_00865 | gluQRS | tRNA glutamyl-Q(34) synthetase GluQRS | 0.56 | MCAODC_02730 | rlmB | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | low | > 87 |
| Escherichia coli ECRC100 | 0.47 | OKFHMN_10350 | gluQRS | tRNA glutamyl-Q(34) synthetase GluQRS | 0.56 | OKFHMN_12215 | rlmB | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | low | > 80 |
| Escherichia coli ECRC98 | 0.47 | JDDGAC_13945 | gluQRS | tRNA glutamyl-Q(34) synthetase GluQRS | 0.56 | JDDGAC_15855 | rlmB | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | low | > 86 |
| Escherichia coli ECRC99 | 0.47 | KEDOAH_17805 | gluQRS | tRNA glutamyl-Q(34) synthetase GluQRS | 0.56 | KEDOAH_15940 | rlmB | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | — | — |
| Escherichia coli Nissle 1917 | 0.47 | ECOLIN_RS00795 | | tRNA glutamyl-Q(34) synthetase GluQRS | 0.56 | ECOLIN_RS24270 | | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | low | > 55 |
| Escherichia coli ECRC102 | 0.47 | NIAGMN_08200 | gluQRS | tRNA glutamyl-Q(34) synthetase GluQRS | 0.56 | NIAGMN_10065 | rlmB | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.47 | GFF88 | | glutamyl-Q-tRNA synthetase | 0.55 | GFF833 | | '23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-)' transl_table=11 | low | > 78 |
| Serratia liquefaciens MT49 | 0.46 | IAI46_21215 | | tRNA glutamyl-Q(34) synthetase GluQRS | 0.56 | IAI46_01665 | | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | low | > 86 |
| Enterobacter sp. TBS_079 | 0.46 | MPMX20_00830 | | Glutamyl-Q tRNA(Asp) synthetase | 0.56 | MPMX20_00461 | | 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB | low | > 85 |
| Dickeya dianthicola 67-19 | 0.46 | HGI48_RS16055 | | tRNA glutamyl-Q(34) synthetase GluQRS | 0.56 | HGI48_RS17310 | | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | — | — |
| Rahnella sp. WP5 | 0.45 | EX31_RS03255 | | tRNA glutamyl-Q(34) synthetase GluQRS | 0.55 | EX31_RS08780 | | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | low | > 89 |
| Dechlorosoma suillum PS | 0.45 | Dsui_1040 | | glutamyl-queuosine tRNA(Asp) synthetase | 0.45 | Dsui_1899 | | rRNA methylase, putative, group 3 | low | > 51 |
| Dickeya dianthicola ME23 | 0.45 | DZA65_RS17140 | | tRNA glutamyl-Q(34) synthetase GluQRS | 0.56 | DZA65_RS18400 | | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | low | > 75 |
| Pectobacterium carotovorum WPP14 | 0.45 | HER17_RS05575 | | tRNA glutamyl-Q(34) synthetase GluQRS | 0.56 | HER17_RS03840 | | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | low | > 75 |
| Enterobacter asburiae PDN3 | 0.44 | EX28DRAFT_3733 | | glutamyl-queuosine tRNA(Asp) synthetase | 0.56 | EX28DRAFT_3377 | | rRNA methylase, putative, group 3 | low | > 76 |
| Dyella japonica UNC79MFTsu3.2 | 0.44 | ABZR86_RS00575 | | tRNA glutamyl-Q(34) synthetase GluQRS | 0.49 | ABZR86_RS08265 | | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | low | > 74 |
| Erwinia tracheiphila SCR3 | 0.44 | LU632_RS20085 | gluQRS | tRNA glutamyl-Q(34) synthetase GluQRS | 0.55 | LU632_RS21745 | rlmB | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | low | > 74 |
| Kangiella aquimarina DSM 16071 | 0.44 | B158DRAFT_0057 | | glutamyl-queuosine tRNA(Asp) synthetase | 0.57 | B158DRAFT_1990 | | 23S rRNA Gm-2251 2'-O-methyltransferase (EC 2.1.1.185) | low | > 40 |
| Dickeya dadantii 3937 | 0.44 | DDA3937_RS15940 | | tRNA glutamyl-Q(34) synthetase GluQRS | 0.57 | DDA3937_RS17255 | | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | low | > 74 |
| Acinetobacter radioresistens SK82 | 0.43 | MPMX26_00176 | | Glutamyl-Q tRNA(Asp) synthetase | 0.44 | MPMX26_00241 | | 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB | low | > 36 |
| Klebsiella michiganensis M5al | 0.43 | BWI76_RS05010 | | tRNA glutamyl-Q synthetase | 0.55 | BWI76_RS02580 | | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase | low | > 92 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.43 | Xcc-8004.2261.1 | | glutamyl-Q-tRNA synthetase | 0.45 | Xcc-8004.3368.1 | | 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-) | low | > 74 |
| Pantoea sp. MT58 | 0.43 | IAI47_15640 | | tRNA glutamyl-Q(34) synthetase GluQRS | 0.57 | IAI47_02630 | | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | low | > 76 |
| Lysobacter sp. OAE881 | 0.42 | ABIE51_RS13520 | | tRNA glutamyl-Q(34) synthetase GluQRS | 0.43 | ABIE51_RS07480 | | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | low | > 62 |
| Vibrio cholerae E7946 ATCC 55056 | 0.42 | CSW01_03150 | | tRNA glutamyl-Q(34) synthetase GluQRS | 0.56 | CSW01_13150 | | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | low | > 62 |
| Shewanella amazonensis SB2B | 0.42 | Sama_0779 | | glutamyl-tRNA synthetase domain-containing protein (RefSeq) | 0.58 | Sama_3066 | | 23S rRNA (guanosine-2'-O-)-methyltransferase (RefSeq) | low | > 62 |
| Shewanella oneidensis MR-1 | 0.42 | SO0873 | | glutamyl-tRNA synthetase domain protein (NCBI ptt file) | 0.57 | SO3934 | | RNA methyltransferase, TrmH family, group 3 (NCBI ptt file) | low | > 76 |
| Marinobacter adhaerens HP15 | 0.42 | HP15_331 | | glutamyl-Q tRNA(Asp) synthetase | 0.59 | HP15_623 | | RNA methyltransferase, TrmH family, group 3 | low | > 73 |
| Shewanella sp. ANA-3 | 0.41 | Shewana3_3405 | | glutamyl-tRNA synthetase, class Ic (RefSeq) | 0.57 | Shewana3_0698 | | 23S rRNA (guanosine-2'-O-)-methyltransferase (RefSeq) | low | > 73 |
| Shewanella loihica PV-4 | 0.41 | Shew_3130 | | glutamate--tRNA ligase (RefSeq) | 0.55 | Shew_3288 | | 23S rRNA (guanosine-2'-O-)-methyltransferase (RefSeq) | low | > 60 |
| Paraburkholderia sabiae LMG 24235 | 0.41 | QEN71_RS24480 | | tRNA glutamyl-Q(34) synthetase GluQRS | 0.49 | QEN71_RS22920 | | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | low | > 153 |
| Rhodanobacter denitrificans MT42 | 0.41 | LRK55_RS14535 | | tRNA glutamyl-Q(34) synthetase GluQRS | 0.48 | LRK55_RS00230 | | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | low | > 63 |
| Rhodanobacter sp. FW510-T8 | 0.41 | OKGIIK_03640 | gluQRS | tRNA glutamyl-Q(34) synthetase GluQRS | 0.46 | OKGIIK_06760 | rlmB | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | low | > 52 |
| Rhodanobacter denitrificans FW104-10B01 | 0.41 | LRK54_RS14820 | | tRNA glutamyl-Q(34) synthetase GluQRS | 0.47 | LRK54_RS00490 | | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | low | > 59 |
| Paraburkholderia graminis OAS925 | 0.41 | ABIE53_001439 | | glutamyl-Q tRNA(Asp) synthetase | 0.48 | ABIE53_001941 | | 23S rRNA (guanosine2251-2'-O)-methyltransferase | low | > 113 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.40 | H281DRAFT_00309 | | glutamyl-Q tRNA(Asp) synthetase | 0.48 | H281DRAFT_00713 | | 23S rRNA Gm-2251 2'-O-methyltransferase | low | > 103 |
| Burkholderia phytofirmans PsJN | 0.40 | BPHYT_RS06160 | | glutamyl-Q tRNA(Asp) ligase | 0.49 | BPHYT_RS08460 | | 23S rRNA (guanosine-2'-O-)-methyltransferase | — | — |
| Ralstonia sp. UNC404CL21Col | 0.40 | ABZR87_RS15535 | | tRNA glutamyl-Q(34) synthetase GluQRS | 0.51 | ABZR87_RS10990 | | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | low | > 80 |
| Herbaspirillum seropedicae SmR1 | 0.39 | HSERO_RS17850 | | glutamyl-Q tRNA(Asp) ligase | 0.49 | HSERO_RS09295 | | 23S rRNA (guanosine-2'-O-)-methyltransferase | low | > 78 |
| Alteromonas macleodii MIT1002 | 0.39 | MIT1002_03691 | | Glutamyl-Q tRNA(Asp) synthetase | 0.59 | MIT1002_03605 | | 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB | low | > 70 |
| Ralstonia solanacearum UW163 | 0.38 | UW163_RS10025 | | tRNA glutamyl-Q(34) synthetase GluQRS | 0.51 | UW163_RS12815 | | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.38 | RALBFv3_RS03645 | | tRNA glutamyl-Q(34) synthetase GluQRS | 0.51 | RALBFv3_RS15350 | | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | — | — |
| Castellaniella sp019104865 MT123 | 0.38 | ABCV34_RS12295 | | glutamyl-Q tRNA(Asp) synthetase | 0.46 | ABCV34_RS06630 | | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | low | > 48 |
| Cupriavidus basilensis FW507-4G11 | 0.38 | RR42_RS14805 | | glutamyl-Q tRNA(Asp) ligase | 0.50 | RR42_RS13060 | | 23S rRNA methyltransferase | low | > 128 |
| Ralstonia solanacearum PSI07 | 0.37 | RPSI07_RS13585 | | tRNA glutamyl-Q(34) synthetase GluQRS | 0.51 | RPSI07_RS18025 | | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | low | > 81 |
| Acidovorax sp. GW101-3H11 | 0.37 | Ac3H11_4162 | | glutamyl-Q-tRNA synthetase | 0.45 | Ac3H11_4141 | | 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-) | low | > 79 |
| Ralstonia solanacearum GMI1000 | 0.37 | RS_RS11090 | | tRNA glutamyl-Q(34) synthetase GluQRS | 0.52 | RS_RS06160 | | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | low | > 80 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.37 | GFF5183 | | glutamyl-Q-tRNA synthetase | 0.44 | GFF4838 | | 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB (EC 2.1.1.-) | low | > 90 |
| Variovorax sp. SCN45 | 0.35 | GFF592 | | Glutamyl-Q tRNA(Asp) synthetase | 0.44 | GFF1018 | | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase (EC 2.1.1.185) | low | > 127 |
| Variovorax sp. OAS795 | 0.35 | ABID97_RS18025 | | tRNA glutamyl-Q(34) synthetase GluQRS | 0.44 | ABID97_RS14320 | | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | low | > 91 |
| Phaeobacter inhibens DSM 17395 | 0.26 | PGA1_c14410 | | putative glutamyl-tRNA synthetase | 0.26 | PGA1_c09200 | | putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB | low | > 62 |
| Caulobacter crescentus NA1000 | 0.24 | CCNA_02288 | | tRNA synthetase class I, catalytic domain protein | 0.26 | CCNA_01297 | | 23S rRNA Gm2251 methyltransferase | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.24 | CCNA_02288 | | tRNA synthetase class I, catalytic domain protein | 0.26 | CCNA_01297 | | 23S rRNA Gm2251 methyltransferase | low | > 67 |
| Dinoroseobacter shibae DFL-12 | 0.24 | Dshi_1474 | | glutamyl-tRNA synthetase class Ic (RefSeq) | 0.25 | Dshi_2571 | | RNA methyltransferase, TrmH family, group 3 (RefSeq) | low | > 64 |
| Rhodopseudomonas palustris CGA009 | 0.23 | TX73_024705 | | tRNA glutamyl-Q(34) synthetase GluQRS | 0.27 | TX73_017390 | | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | low | > 86 |
Not shown: 7 genomes with orthologs for Pf6N2E2_5159 only; 10 genomes with orthologs for Pf6N2E2_3606 only