Conservation of cofitness between PP_4130 and PP_5294 in Pseudomonas putida KT2440

80 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_4130 NADH:ubiquinone oxidoreductase, membrane subunit M 1.0 PP_5294 Ribonuclease PH 0.36 19
Pseudomonas fluorescens FW300-N2C3 0.87 AO356_22015 NADH:ubiquinone oxidoreductase subunit M 0.95 AO356_12500 ribonuclease PH — —
Pseudomonas fluorescens FW300-N2E2 0.87 Pf6N2E2_266 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) 0.95 Pf6N2E2_4365 Ribonuclease PH (EC 2.7.7.56) — —
Pseudomonas fluorescens GW456-L13 0.86 PfGW456L13_2622 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) 0.93 PfGW456L13_784 Ribonuclease PH (EC 2.7.7.56) — —
Pseudomonas sp. RS175 0.86 PFR28_02638 NADH-quinone oxidoreductase subunit M 0.94 PFR28_04420 Ribonuclease PH — —
Pseudomonas simiae WCS417 0.86 PS417_16630 NADH:ubiquinone oxidoreductase subunit M 0.94 PS417_27810 ribonuclease PH — —
Pseudomonas fluorescens SBW25 0.86 PFLU_RS18670 NADH-quinone oxidoreductase subunit M 0.94 PFLU_RS29490 ribonuclease PH 0.59 101
Pseudomonas fluorescens SBW25-INTG 0.86 PFLU_RS18670 NADH-quinone oxidoreductase subunit M 0.94 PFLU_RS29490 ribonuclease PH low > 109
Pseudomonas fluorescens FW300-N2E3 0.85 AO353_27795 NADH:ubiquinone oxidoreductase subunit M 0.94 AO353_09260 ribonuclease PH — —
Pseudomonas fluorescens FW300-N1B4 0.84 Pf1N1B4_4029 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) 0.94 Pf1N1B4_2117 Ribonuclease PH (EC 2.7.7.56) low > 87
Pseudomonas syringae pv. syringae B728a 0.83 Psyr_3208 NADH dehydrogenase subunit M 0.95 Psyr_0213 RNAse PH 0.34 32
Pseudomonas syringae pv. syringae B728a ΔmexB 0.83 Psyr_3208 NADH dehydrogenase subunit M 0.95 Psyr_0213 RNAse PH — —
Pseudomonas sp. S08-1 0.81 OH686_00100 NADH-ubiquinone oxidoreductase chain M 0.88 OH686_13570 ribonuclease PH low > 80
Serratia liquefaciens MT49 0.73 IAI46_17655 NADH-quinone oxidoreductase subunit M 0.67 IAI46_24850 ribonuclease PH low > 86
Rahnella sp. WP5 0.73 EX31_RS19380 NADH-quinone oxidoreductase subunit M 0.66 EX31_RS14505 ribonuclease PH low > 89
Escherichia coli BL21 0.73 ECD_02202 NADH:ubiquinone oxidoreductase, membrane subunit M 0.66 ECD_03500 ribonuclease PH low > 60
Escherichia coli ECRC99 0.73 KEDOAH_05300 nuoM NADH-quinone oxidoreductase subunit M 0.66 KEDOAH_12555 rph ribonuclease PH — —
Escherichia coli ECOR38 0.73 HEPCGN_22100 nuoM NADH-quinone oxidoreductase subunit M 0.66 HEPCGN_14410 rph ribonuclease PH low > 85
Escherichia coli HS(pFamp)R (ATCC 700891) 0.73 OHPLBJKB_01429 NADH-quinone oxidoreductase subunit M 0.66 OHPLBJKB_00059 Ribonuclease PH low > 73
Escherichia coli ECRC101 0.73 MCAODC_13935 nuoM NADH-quinone oxidoreductase subunit M 0.66 MCAODC_06100 rph ribonuclease PH — —
Escherichia coli ECRC62 0.73 BNILDI_13435 nuoM NADH-quinone oxidoreductase subunit M 0.66 BNILDI_04045 rph ribonuclease PH — —
Escherichia coli ECRC101 0.73 OKFHMN_22895 nuoM NADH-quinone oxidoreductase subunit M 0.66 OKFHMN_15590 rph ribonuclease PH — —
Escherichia coli ECOR27 0.73 NOLOHH_14515 nuoM NADH-quinone oxidoreductase subunit M 0.66 NOLOHH_07470 rph ribonuclease PH — —
Escherichia coli ECRC98 0.73 JDDGAC_26860 nuoM NADH-quinone oxidoreductase subunit M 0.66 JDDGAC_19215 rph ribonuclease PH — —
Escherichia coli BW25113 0.73 b2277 nuoM NADH dehydrogenase subunit M (NCBI) 0.64 b3643 rph ribonuclease PH (NCBI) low > 76
Escherichia coli ECRC102 0.73 NIAGMN_20665 nuoM NADH-quinone oxidoreductase subunit M 0.66 NIAGMN_13350 rph ribonuclease PH — —
Escherichia coli Nissle 1917 0.73 ECOLIN_RS13230 NADH-quinone oxidoreductase subunit M 0.66 ECOLIN_RS20755 ribonuclease PH low > 52
Escherichia fergusonii Becca 0.73 EFB2_01582 NADH-quinone oxidoreductase subunit M 0.66 EFB2_00170 Ribonuclease PH low > 86
Erwinia tracheiphila SCR3 0.73 LU632_RS08020 nuoM NADH-quinone oxidoreductase subunit M 0.64 LU632_RS22020 rph ribonuclease PH low > 74
Pantoea sp. MT58 0.73 IAI47_06415 NADH-quinone oxidoreductase subunit M 0.65 IAI47_00595 ribonuclease PH low > 76
Klebsiella michiganensis M5al 0.72 BWI76_RS20135 NADH-quinone oxidoreductase subunit M 0.65 BWI76_RS27390 ribonuclease PH low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.72 GFF1880 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) 0.66 GFF366 Ribonuclease PH (EC 2.7.7.56) low > 78
Enterobacter asburiae PDN3 0.72 EX28DRAFT_0333 proton-translocating NADH-quinone oxidoreductase, chain M 0.65 EX28DRAFT_3893 ribonuclease PH low > 76
Enterobacter sp. TBS_079 0.72 MPMX20_03207 NADH-quinone oxidoreductase subunit M 0.65 MPMX20_00092 Ribonuclease PH low > 85
Pectobacterium carotovorum WPP14 0.72 HER17_RS07180 NADH-quinone oxidoreductase subunit M 0.65 HER17_RS20855 ribonuclease PH low > 75
Dickeya dianthicola 67-19 0.72 HGI48_RS14255 NADH-quinone oxidoreductase subunit M 0.68 HGI48_RS00675 ribonuclease PH low > 71
Dickeya dianthicola ME23 0.72 DZA65_RS14930 NADH-quinone oxidoreductase subunit M 0.68 DZA65_RS00730 ribonuclease PH — —
Dickeya dadantii 3937 0.71 DDA3937_RS14280 NADH-quinone oxidoreductase subunit M 0.69 DDA3937_RS20540 ribonuclease PH — —
Shewanella oneidensis MR-1 0.68 SO1010 nuoM NADH dehydrogenase I, M subunit (NCBI ptt file) 0.65 SO4256 rph ribonuclease PH (NCBI ptt file) low > 76
Acinetobacter radioresistens SK82 0.58 MPMX26_02544 NADH-quinone oxidoreductase subunit M 0.65 MPMX26_00040 Ribonuclease PH — —
Azospirillum sp. SherDot2 0.35 MPMX19_01734 NADH-quinone oxidoreductase subunit M 0.56 MPMX19_02576 Ribonuclease PH — —
Azospirillum brasilense Sp245 0.35 AZOBR_RS07225 NADH:ubiquinone oxidoreductase subunit M 0.58 AZOBR_RS02205 ribonuclease PH — —
Sinorhizobium meliloti 1021 0.34 SMc01926 NADH dehydrogenase subunit M 0.60 SMc01144 ribonuclease PH — —
Rhodopseudomonas palustris CGA009 0.34 TX73_022035 NADH-quinone oxidoreductase subunit M 0.56 TX73_001710 ribonuclease PH 0.49 67
Rhodospirillum rubrum S1H 0.33 Rru_A1567 Proton-translocating NADH-quinone oxidoreductase, chain M (NCBI) 0.58 Rru_A3641 Ribonuclease PH (NCBI) — —
Agrobacterium fabrum C58 0.33 Atu1282 NADH dehydrogenase I chain M 0.60 Atu0327 ribonuclease PH — —
Caulobacter crescentus NA1000 Δfur 0.33 CCNA_02016 NADH-quinone oxidoreductase chain M 0.50 CCNA_00151 ribonuclease PH — —
Caulobacter crescentus NA1000 0.33 CCNA_02016 NADH-quinone oxidoreductase chain M 0.50 CCNA_00151 ribonuclease PH — —
Brevundimonas sp. GW460-12-10-14-LB2 0.33 A4249_RS06345 NADH-quinone oxidoreductase subunit M 0.51 A4249_RS13125 ribonuclease PH — —
Rhizobium sp. OAE497 0.32 ABIE40_RS07245 NADH-quinone oxidoreductase subunit M 0.60 ABIE40_RS01640 ribonuclease PH — —
Paraburkholderia sabiae LMG 24235 0.32 QEN71_RS24090 NADH-quinone oxidoreductase subunit M 0.64 QEN71_RS03645 ribonuclease PH low > 153
Magnetospirillum magneticum AMB-1 0.32 AMB_RS13950 NADH-quinone oxidoreductase subunit M 0.54 AMB_RS22760 ribonuclease PH — —
Ralstonia solanacearum PSI07 0.32 RPSI07_RS14395 NADH-quinone oxidoreductase subunit M 0.61 RPSI07_RS13840 ribonuclease PH — —
Ralstonia solanacearum UW163 0.32 UW163_RS10810 NADH-quinone oxidoreductase subunit M 0.61 UW163_RS10375 ribonuclease PH — —
Ralstonia solanacearum GMI1000 0.32 RS_RS10285 NADH-quinone oxidoreductase subunit M 0.61 RS_RS10830 ribonuclease PH — —
Ralstonia solanacearum IBSBF1503 0.32 RALBFv3_RS02915 NADH-quinone oxidoreductase subunit M 0.61 RALBFv3_RS03345 ribonuclease PH — —
Paraburkholderia bryophila 376MFSha3.1 0.32 H281DRAFT_04579 NADH dehydrogenase subunit M 0.63 H281DRAFT_04008 RNAse PH — —
Paraburkholderia graminis OAS925 0.32 ABIE53_001602 NADH-quinone oxidoreductase subunit M 0.63 ABIE53_003234 ribonuclease PH — —
Phaeobacter inhibens DSM 17395 0.32 PGA1_c10540 NADH-quinone oxidoreductase subunit M 0.53 PGA1_c35030 ribonuclease PH — —
Cupriavidus basilensis FW507-4G11 0.31 RR42_RS05570 NADH:ubiquinone oxidoreductase subunit M 0.60 RR42_RS04890 ribonuclease PH — —
Burkholderia phytofirmans PsJN 0.31 BPHYT_RS06685 NADH:ubiquinone oxidoreductase subunit M 0.64 BPHYT_RS15325 ribonuclease PH low > 109
Hydrogenophaga sp. GW460-11-11-14-LB1 0.31 GFF3693 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) 0.61 GFF3254 Ribonuclease PH (EC 2.7.7.56) — —
Ralstonia sp. UNC404CL21Col 0.31 ABZR87_RS14820 NADH-quinone oxidoreductase subunit M 0.61 ABZR87_RS15255 ribonuclease PH — —
Bosea sp. OAE506 0.31 ABIE41_RS17880 NADH-quinone oxidoreductase subunit M 0.58 ABIE41_RS03295 ribonuclease PH — —
Dinoroseobacter shibae DFL-12 0.31 Dshi_1328 proton-translocating NADH-quinone oxidoreductase, chain M (RefSeq) 0.54 Dshi_3463 ribonuclease PH (RefSeq) — —
Acidovorax sp. GW101-3H11 0.30 Ac3H11_1440 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) 0.55 Ac3H11_3670 Ribonuclease PH (EC 2.7.7.56) — —
Sphingomonas koreensis DSMZ 15582 0.30 Ga0059261_0697 proton-translocating NADH-quinone oxidoreductase, chain M 0.49 Ga0059261_2741 ribonuclease PH — —
Castellaniella sp019104865 MT123 0.30 ABCV34_RS08690 NADH-quinone oxidoreductase subunit M 0.56 ABCV34_RS03515 ribonuclease PH — —
Dechlorosoma suillum PS 0.30 Dsui_3038 proton-translocating NADH-quinone oxidoreductase, chain M 0.63 Dsui_0494 ribonuclease PH — —
Variovorax sp. SCN45 0.30 GFF4762 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) 0.59 GFF2381 Ribonuclease PH (EC 2.7.7.56) — —
Variovorax sp. OAS795 0.30 ABID97_RS20435 NADH-quinone oxidoreductase subunit M 0.59 ABID97_RS23640 ribonuclease PH — —
Dyella japonica UNC79MFTsu3.2 0.30 ABZR86_RS06055 NADH-quinone oxidoreductase subunit M 0.63 ABZR86_RS11900 ribonuclease PH — —
Lysobacter sp. OAE881 0.29 ABIE51_RS08370 NADH-quinone oxidoreductase subunit M 0.61 ABIE51_RS17285 ribonuclease PH — —
Xanthomonas campestris pv. campestris strain 8004 0.29 Xcc-8004.1995.1 NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) 0.68 Xcc-8004.1221.1 Ribonuclease PH (EC 2.7.7.56) — —
Kangiella aquimarina DSM 16071 0.29 B158DRAFT_0115 NADH dehydrogenase subunit M (EC 1.6.5.3) 0.69 B158DRAFT_0588 ribonuclease PH low > 40
Synechococcus elongatus PCC 7942 0.29 Synpcc7942_1976 ndhD NAD(P)H-quinone oxidoreductase subunit D 0.49 Synpcc7942_1073 rph ribonuclease PH low > 38
Rhodanobacter sp. FW510-T8 0.29 OKGIIK_05825 nuoM NADH-quinone oxidoreductase subunit M 0.60 OKGIIK_12150 rph ribonuclease PH — —
Herbaspirillum seropedicae SmR1 0.29 HSERO_RS08880 NADH:ubiquinone oxidoreductase subunit M 0.64 HSERO_RS10655 ribonuclease PH — —
Rhodanobacter denitrificans MT42 0.29 LRK55_RS00845 NADH-quinone oxidoreductase subunit M 0.60 LRK55_RS11470 ribonuclease PH — —
Rhodanobacter denitrificans FW104-10B01 0.29 LRK54_RS01070 NADH-quinone oxidoreductase subunit M 0.60 LRK54_RS11745 ribonuclease PH — —
Mycobacterium tuberculosis H37Rv 0.25 Rv3157 Probable NADH dehydrogenase I (chain M) NUOK (NADH-ubiquinone oxidoreductase chain M) 0.51 Rv1340 Probable ribonuclease RphA (RNase PH) (tRNA nucleotidyltransferase) — —

Not shown: 8 genomes with orthologs for PP_4130 only; 8 genomes with orthologs for PP_5294 only