Conservation of cofitness between PP_0366 and PP_1231 in Pseudomonas putida KT2440

75 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_0366 dethiobiotin synthetase 1.0 PP_1231 quinolinate synthase [4Fe-4S] cluster subunit 0.42 19
Pseudomonas fluorescens GW456-L13 0.79 PfGW456L13_1151 Dethiobiotin synthetase (EC 6.3.3.3) 0.91 PfGW456L13_1863 Quinolinate synthetase (EC 2.5.1.72) 0.73 35
Pseudomonas fluorescens FW300-N1B4 0.78 Pf1N1B4_2491 Dethiobiotin synthetase (EC 6.3.3.3) 0.91 Pf1N1B4_626 Quinolinate synthetase (EC 2.5.1.72) 0.53 23
Pseudomonas fluorescens FW300-N2C3 0.77 AO356_14155 dethiobiotin synthetase 0.91 AO356_18145 quinolinate synthase A 0.58 6
Pseudomonas fluorescens SBW25 0.77 PFLU_RS27630 dethiobiotin synthase 0.91 PFLU_RS24025 quinolinate synthase NadA low > 109
Pseudomonas sp. RS175 0.77 PFR28_04099 ATP-dependent dethiobiotin synthetase BioD 1 0.92 PFR28_03388 Quinolinate synthase A — —
Pseudomonas fluorescens SBW25-INTG 0.77 PFLU_RS27630 dethiobiotin synthase 0.91 PFLU_RS24025 quinolinate synthase NadA 0.34 47
Pseudomonas fluorescens FW300-N2E2 0.77 Pf6N2E2_4764 Dethiobiotin synthetase (EC 6.3.3.3) 0.91 Pf6N2E2_5553 Quinolinate synthetase (EC 2.5.1.72) 0.40 60
Pseudomonas fluorescens FW300-N2E3 0.77 AO353_07505 dethiobiotin synthetase 0.91 AO353_03525 quinolinate synthase A 0.54 60
Pseudomonas simiae WCS417 0.76 PS417_25985 dethiobiotin synthetase 0.91 PS417_22385 quinolinate synthase A low > 88
Pseudomonas syringae pv. syringae B728a ΔmexB 0.72 Psyr_4683 dethiobiotin synthase 0.88 Psyr_1542 quinolinate synthetase low > 86
Pseudomonas sp. S08-1 0.72 OH686_10335 dethiobiotin synthase 0.91 OH686_19190 quinolinate synthetase complex, A subunit low > 80
Pseudomonas syringae pv. syringae B728a 0.72 Psyr_4683 dethiobiotin synthase 0.88 Psyr_1542 quinolinate synthetase low > 86
Pseudomonas stutzeri RCH2 0.62 Psest_0415 dethiobiotin synthase 0.89 Psest_1509 quinolinate synthetase complex, A subunit 0.48 27
Shewanella loihica PV-4 0.53 Shew_1722 dethiobiotin synthase (RefSeq) 0.67 Shew_1928 quinolinate synthetase (RefSeq) — —
Shewanella sp. ANA-3 0.51 Shewana3_2516 bioD dithiobiotin synthetase (RefSeq) 0.68 Shewana3_2128 quinolinate synthetase (RefSeq) — —
Shewanella oneidensis MR-1 0.51 SO2737 bioD dethiobiotin synthase (NCBI ptt file) 0.69 SO2342 nadA quinolinate synthetase complex, subunit A (NCBI ptt file) — —
Marinobacter adhaerens HP15 0.49 HP15_2482 dethiobiotin synthetase 0.74 HP15_2032 quinolinate synthetase complex, A subunit — —
Pantoea sp. MT58 0.47 IAI47_13515 ATP-dependent dethiobiotin synthetase BioD 0.67 IAI47_13635 quinolinate synthase NadA low > 76
Dickeya dianthicola ME23 0.47 DZA65_RS08980 ATP-dependent dethiobiotin synthetase BioD 0.66 DZA65_RS06945 quinolinate synthase NadA 0.50 47
Dickeya dianthicola 67-19 0.47 HGI48_RS08690 ATP-dependent dethiobiotin synthetase BioD 0.66 HGI48_RS06595 quinolinate synthase NadA low > 71
Enterobacter asburiae PDN3 0.46 EX28DRAFT_2213 dethiobiotin synthase 0.67 EX28DRAFT_2245 quinolinate synthetase (EC 2.5.1.72) low > 76
Vibrio cholerae E7946 ATCC 55056 0.45 CSW01_05660 dethiobiotin synthase 0.66 CSW01_09180 quinolinate synthase low > 62
Dickeya dadantii 3937 0.45 DDA3937_RS08525 ATP-dependent dethiobiotin synthetase BioD 0.64 DDA3937_RS06545 quinolinate synthase NadA low > 74
Enterobacter sp. TBS_079 0.45 MPMX20_01406 ATP-dependent dethiobiotin synthetase BioD 1 0.66 MPMX20_01377 Quinolinate synthase A low > 85
Serratia liquefaciens MT49 0.45 IAI46_06540 ATP-dependent dethiobiotin synthetase BioD 0.70 IAI46_06380 quinolinate synthase NadA low > 86
Escherichia coli Nissle 1917 0.44 ECOLIN_RS04145 dethiobiotin synthase 0.67 ECOLIN_RS03990 quinolinate synthase NadA — —
Escherichia fergusonii Becca 0.44 EFB2_03327 ATP-dependent dethiobiotin synthetase BioD 1 0.67 EFB2_03356 Quinolinate synthase A low > 86
Klebsiella michiganensis M5al 0.44 BWI76_RS08775 dethiobiotin synthase 0.65 BWI76_RS08580 quinolinate synthetase low > 92
Escherichia coli ECRC99 0.44 KEDOAH_21525 bioD dethiobiotin synthase 0.66 KEDOAH_21205 nadA quinolinate synthase NadA — —
Escherichia coli ECRC101 0.44 MCAODC_25600 bioD dethiobiotin synthase 0.66 MCAODC_25980 nadA quinolinate synthase NadA — —
Escherichia coli ECRC98 0.44 JDDGAC_10020 bioD dethiobiotin synthase 0.66 JDDGAC_10415 nadA quinolinate synthase NadA — —
Escherichia coli BL21 0.44 ECD_00745 dethiobiotin synthetase 0.66 ECD_00703 quinolinate synthase, subunit A low > 60
Escherichia coli HS(pFamp)R (ATCC 700891) 0.44 OHPLBJKB_02935 ATP-dependent dethiobiotin synthetase BioD 1 0.66 OHPLBJKB_02963 Quinolinate synthase A low > 73
Escherichia coli BW25113 0.44 b0778 bioD dethiobiotin synthetase (NCBI) 0.66 b0750 nadA quinolinate synthetase (NCBI) 0.33 6
Escherichia coli ECOR27 0.44 NOLOHH_22755 bioD dethiobiotin synthase 0.66 NOLOHH_23190 nadA quinolinate synthase NadA low > 57
Pectobacterium carotovorum WPP14 0.44 HER17_RS13445 dethiobiotin synthase 0.68 HER17_RS14820 quinolinate synthase NadA low > 75
Escherichia coli ECRC101 0.44 OKFHMN_06385 bioD dethiobiotin synthase 0.66 OKFHMN_06760 nadA quinolinate synthase NadA — —
Escherichia coli ECRC102 0.44 NIAGMN_04430 bioD dethiobiotin synthase 0.66 NIAGMN_04810 nadA quinolinate synthase NadA — —
Escherichia coli ECRC62 0.43 BNILDI_21025 bioD dethiobiotin synthase 0.66 BNILDI_21185 nadA quinolinate synthase NadA — —
Dechlorosoma suillum PS 0.43 Dsui_2884 dethiobiotin synthase 0.15 Dsui_1043 quinolinate synthetase complex, A subunit — —
Escherichia coli ECOR38 0.43 HEPCGN_01655 bioD dethiobiotin synthase 0.66 HEPCGN_01515 nadA quinolinate synthase NadA low > 85
Hydrogenophaga sp. GW460-11-11-14-LB1 0.42 GFF3994 Dethiobiotin synthetase (EC 6.3.3.3) 0.60 GFF1216 Quinolinate synthetase (EC 2.5.1.72) — —
Rhodanobacter sp. FW510-T8 0.42 OKGIIK_16455 bioD dethiobiotin synthase 0.23 OKGIIK_00930 nadA quinolinate synthase NadA low > 52
Shewanella amazonensis SB2B 0.42 Sama_1441 bioD dithiobiotin synthetase (RefSeq) 0.69 Sama_1712 quinolinate synthetase (RefSeq) — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.42 GFF674 Dethiobiotin synthetase (EC 6.3.3.3) 0.66 GFF4 Quinolinate synthetase (EC 2.5.1.72) — —
Rahnella sp. WP5 0.41 EX31_RS23710 ATP-dependent dethiobiotin synthetase BioD 0.66 EX31_RS23525 quinolinate synthase NadA low > 89
Rhodanobacter denitrificans FW104-10B01 0.41 LRK54_RS07180 dethiobiotin synthase 0.22 LRK54_RS13900 quinolinate synthase NadA low > 59
Rhodanobacter denitrificans MT42 0.41 LRK55_RS06915 dethiobiotin synthase 0.22 LRK55_RS13615 quinolinate synthase NadA low > 63
Alteromonas macleodii MIT1002 0.40 MIT1002_01382 ATP-dependent dethiobiotin synthetase BioD 1 0.68 MIT1002_01344 Quinolinate synthase A — —
Kangiella aquimarina DSM 16071 0.39 B158DRAFT_0869 dethiobiotin synthase 0.65 B158DRAFT_2453 quinolinate synthetase (EC 2.5.1.72) — —
Variovorax sp. OAS795 0.37 ABID97_RS16255 dethiobiotin synthase 0.59 ABID97_RS07415 quinolinate synthase NadA — —
Herbaspirillum seropedicae SmR1 0.37 HSERO_RS12255 dethiobiotin synthetase 0.62 HSERO_RS11065 quinolinate synthetase low > 78
Burkholderia phytofirmans PsJN 0.37 BPHYT_RS02155 dithiobiotin synthetase 0.61 BPHYT_RS15650 quinolinate synthetase low > 109
Ralstonia solanacearum IBSBF1503 0.35 RALBFv3_RS00825 dethiobiotin synthase 0.61 RALBFv3_RS04735 quinolinate synthase NadA — —
Acidovorax sp. GW101-3H11 0.35 Ac3H11_3829 Dethiobiotin synthetase (EC 6.3.3.3) 0.61 Ac3H11_3837 Quinolinate synthetase (EC 2.5.1.72) low > 79
Ralstonia solanacearum UW163 0.35 UW163_RS14160 dethiobiotin synthase 0.61 UW163_RS08935 quinolinate synthase NadA — —
Paraburkholderia bryophila 376MFSha3.1 0.34 H281DRAFT_02096 dethiobiotin synthetase 0.60 H281DRAFT_04071 quinolinate synthetase low > 103
Paraburkholderia graminis OAS925 0.34 ABIE53_000578 dethiobiotin synthetase 0.61 ABIE53_003294 quinolinate synthase low > 113
Ralstonia solanacearum PSI07 0.33 RPSI07_RS16695 dethiobiotin synthase 0.61 RPSI07_RS12650 quinolinate synthase NadA low > 81
Ralstonia sp. UNC404CL21Col 0.33 ABZR87_RS12345 dethiobiotin synthase 0.62 ABZR87_RS00355 quinolinate synthase NadA low > 80
Ralstonia solanacearum GMI1000 0.32 RS_RS07440 ATP-dependent dethiobiotin synthetase BioD 0.61 RS_RS12295 quinolinate synthase — —
Paraburkholderia sabiae LMG 24235 0.32 QEN71_RS01090 dethiobiotin synthase 0.62 QEN71_RS03060 quinolinate synthase NadA — —
Cupriavidus basilensis FW507-4G11 0.28 RR42_RS00935 dethiobiotin synthetase 0.62 RR42_RS17020 quinolinate synthetase — —
Parabacteroides merdae CL09T00C40 0.18 HMPREF1078_RS15275 dethiobiotin synthase 0.37 HMPREF1078_RS06555 quinolinate synthase NadA — —
Rhizobium sp. OAE497 0.15 ABIE40_RS21065 dethiobiotin synthase 0.21 ABIE40_RS23255 quinolinate synthase NadA low > 107
Synechococcus elongatus PCC 7942 0.15 Synpcc7942_0030 bioD dethiobiotin synthase 0.35 Synpcc7942_1448 nadA quinolinate synthetase — —
Bacteroides stercoris CC31F 0.15 HMPREF1181_RS15515 ATP-dependent dethiobiotin synthetase BioD 0.38 HMPREF1181_RS01920 quinolinate synthase NadA — —
Pedobacter sp. GW460-11-11-14-LB5 0.14 CA265_RS09760 dethiobiotin synthase 0.36 CA265_RS21180 quinolinate synthase — —
Bacteroides ovatus ATCC 8483 0.14 BACOVA_00874 dethiobiotin synthase 0.39 BACOVA_02839 quinolinate synthetase complex, A subunit low > 94
Castellaniella sp019104865 MT123 0.14 ABCV34_RS15285 dethiobiotin synthase 0.58 ABCV34_RS03700 quinolinate synthase NadA low > 48
Agrobacterium fabrum C58 0.14 Atu3999 dithiobiotin synthetase 0.22 Atu4098 quinolinate synthetase 0.62 10
Bacteroides thetaiotaomicron VPI-5482 0.13 BT1446 dethiobiotin synthetase (NCBI ptt file) 0.39 BT3164 quinolinate synthetase A (NCBI ptt file) 0.38 33
Phaeobacter inhibens DSM 17395 0.13 PGA1_c09140 dethiobiotin synthetase BioD 0.24 PGA1_c27790 quinolinate synthetase A 0.45 5
Methanococcus maripaludis S2 0.13 MMP_RS08095 dethiobiotin synthase 0.20 MMP_RS06390 quinolinate synthase NadA — —
Methanococcus maripaludis JJ 0.13 MMJJ_RS06270 dethiobiotin synthase 0.20 MMJJ_RS07960 quinolinate synthase NadA low > 28

Not shown: 7 genomes with orthologs for PP_0366 only; 15 genomes with orthologs for PP_1231 only