Conservation of cofitness between PP_4722 and PP_0697 in Pseudomonas putida KT2440

75 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_4722 Transcription elongation factor GreA 1.0 PP_0697 ribosomal-protein-S18-alanine N-acetyltransferase 0.51 2
Pseudomonas fluorescens FW300-N2E2 0.89 Pf6N2E2_3363 Transcription elongation factor GreA 0.82 Pf6N2E2_5188 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) — —
Pseudomonas fluorescens FW300-N2C3 0.87 AO356_07475 transcription elongation factor GreA 0.82 AO356_16260 ribosomal-protein-alanine acetyltransferase — —
Pseudomonas sp. RS175 0.85 PFR28_00078 Transcription elongation factor GreA 0.82 PFR28_03681 [Ribosomal protein S18]-alanine N-acetyltransferase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.82 Psyr_4190 transcription elongation factor GreA 0.80 Psyr_0857 [SSU ribosomal protein S18P]-alanine acetyltransferase — —
Pseudomonas syringae pv. syringae B728a 0.82 Psyr_4190 transcription elongation factor GreA 0.80 Psyr_0857 [SSU ribosomal protein S18P]-alanine acetyltransferase — —
Pseudomonas sp. S08-1 0.81 OH686_17085 Transcription elongation factor GreA 0.75 OH686_08035 ribosomal-protein-alanine acetyltransferase low > 80
Pseudomonas fluorescens SBW25-INTG 0.80 PFLU_RS25875 transcription elongation factor GreA 0.82 PFLU_RS03395 ribosomal-protein-alanine N-acetyltransferase 0.30 15
Pseudomonas fluorescens SBW25 0.80 PFLU_RS25875 transcription elongation factor GreA 0.82 PFLU_RS03395 ribosomal-protein-alanine N-acetyltransferase low > 109
Pseudomonas fluorescens FW300-N1B4 0.80 Pf1N1B4_1171 Transcription elongation factor GreA 0.81 Pf1N1B4_2891 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) — —
Pseudomonas fluorescens FW300-N2E3 0.80 AO353_05625 transcription elongation factor GreA 0.84 AO353_14585 ribosomal-protein-alanine acetyltransferase 0.24 90
Pseudomonas fluorescens GW456-L13 0.79 PfGW456L13_5098 Transcription elongation factor GreA 0.81 PfGW456L13_1551 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) — —
Pseudomonas simiae WCS417 0.79 PS417_24035 transcription elongation factor GreA 0.81 PS417_03300 alanine acetyltransferase — —
Pseudomonas stutzeri RCH2 0.77 Psest_0969 transcription elongation factor GreA 0.81 Psest_1058 ribosomal-protein-alanine acetyltransferase low > 67
Shewanella loihica PV-4 0.61 Shew_2837 transcription elongation factor GreA (RefSeq) 0.29 Shew_2943 ribosomal-protein-alanine acetyltransferase (RefSeq) — —
Shewanella sp. ANA-3 0.61 Shewana3_1017 transcription elongation factor GreA (RefSeq) 0.29 Shewana3_0987 SSU ribosomal protein S18P alanine acetyltransferase (RefSeq) — —
Escherichia coli BW25113 0.60 b3181 greA transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) 0.31 b4373 rimI ribosomal-protein-alanine N-acetyltransferase (NCBI) low > 76
Escherichia coli ECRC62 0.60 BNILDI_01690 greA transcription elongation factor GreA 0.31 BNILDI_07990 rimI ribosomal protein S18-alanine N-acetyltransferase — —
Escherichia coli ECOR38 0.60 HEPCGN_16920 greA transcription elongation factor GreA 0.31 HEPCGN_09295 rimI ribosomal protein S18-alanine N-acetyltransferase — —
Escherichia coli ECRC101 0.60 MCAODC_08565 greA transcription elongation factor GreA 0.31 MCAODC_01805 rimI ribosomal protein S18-alanine N-acetyltransferase — —
Escherichia coli Nissle 1917 0.60 ECOLIN_RS18320 transcription elongation factor GreA 0.31 ECOLIN_RS25100 ribosomal protein S18-alanine N-acetyltransferase — —
Escherichia fergusonii Becca 0.60 EFB2_00642 Transcription elongation factor GreA 0.31 EFB2_04074 [Ribosomal protein S18]-alanine N-acetyltransferase low > 86
Escherichia coli ECRC99 0.60 KEDOAH_10105 greA transcription elongation factor GreA 0.31 KEDOAH_16855 rimI ribosomal protein S18-alanine N-acetyltransferase — —
Escherichia coli ECRC101 0.60 OKFHMN_18045 greA transcription elongation factor GreA 0.31 OKFHMN_11290 rimI ribosomal protein S18-alanine N-acetyltransferase — —
Escherichia coli ECOR27 0.60 NOLOHH_09845 greA transcription elongation factor GreA 0.31 NOLOHH_03610 rimI ribosomal protein S18-alanine N-acetyltransferase — —
Escherichia coli BL21 0.60 ECD_03046 transcript cleavage factor 0.31 ECD_04248 ribosomal-protein-S18-alanine N-acetyltransferase low > 60
Escherichia coli HS(pFamp)R (ATCC 700891) 0.60 OHPLBJKB_00519 Transcription elongation factor GreA 0.31 OHPLBJKB_03689 Ribosomal-protein-alanine acetyltransferase low > 73
Escherichia coli ECRC98 0.60 JDDGAC_21670 greA transcription elongation factor GreA 0.31 JDDGAC_14885 rimI ribosomal protein S18-alanine N-acetyltransferase — —
Escherichia coli ECRC102 0.60 NIAGMN_15805 greA transcription elongation factor GreA 0.31 NIAGMN_09140 rimI ribosomal protein S18-alanine N-acetyltransferase — —
Shewanella oneidensis MR-1 0.60 SO1191 greA transcription elongation factor GreA (NCBI ptt file) 0.28 SO1160 rimI ribosomal-protein-alanine acetyltransferase (NCBI ptt file) low > 76
Klebsiella michiganensis M5al 0.59 BWI76_RS25160 transcription elongation factor GreA 0.29 BWI76_RS04090 ribosomal-protein-alanine N-acetyltransferase RimI low > 92
Enterobacter asburiae PDN3 0.59 EX28DRAFT_3232 transcription elongation factor GreA 0.31 EX28DRAFT_3581 ribosomal-protein-alanine acetyltransferase low > 76
Shewanella amazonensis SB2B 0.59 Sama_0951 GreA/GreB family elongation factor (RefSeq) 0.31 Sama_2596 ribosomal-protein-alanine acetyltransferase (RefSeq) low > 62
Marinobacter adhaerens HP15 0.59 HP15_3076 protein containing prokaryotic transcription elongation factor GreA domain 0.38 HP15_540 ribosomal-protein-alanine acetyltransferase low > 73
Enterobacter sp. TBS_079 0.59 MPMX20_04085 Transcription elongation factor GreA 0.29 MPMX20_00671 [Ribosomal protein S18]-alanine N-acetyltransferase low > 85
Pantoea sp. MT58 0.58 IAI47_17080 transcription elongation factor GreA 0.33 IAI47_16365 ribosomal protein S18-alanine N-acetyltransferase low > 76
Kangiella aquimarina DSM 16071 0.58 B158DRAFT_0617 transcription elongation factor GreA 0.33 B158DRAFT_2236 [SSU ribosomal protein S18P]-alanine acetyltransferase (EC 2.3.1.128) 0.52 39
Pectobacterium carotovorum WPP14 0.57 HER17_RS18330 transcription elongation factor GreA 0.34 HER17_RS18090 ribosomal protein S18-alanine N-acetyltransferase — —
Dickeya dadantii 3937 0.57 DDA3937_RS03015 transcription elongation factor GreA 0.34 DDA3937_RS03180 ribosomal protein S18-alanine N-acetyltransferase — —
Dickeya dianthicola ME23 0.57 DZA65_RS03180 transcription elongation factor GreA 0.34 DZA65_RS03375 ribosomal protein S18-alanine N-acetyltransferase low > 75
Dickeya dianthicola 67-19 0.57 HGI48_RS03185 transcription elongation factor GreA 0.34 HGI48_RS03330 ribosomal protein S18-alanine N-acetyltransferase low > 71
Serratia liquefaciens MT49 0.56 IAI46_01880 transcription elongation factor GreA 0.35 IAI46_02870 ribosomal protein S18-alanine N-acetyltransferase low > 86
Acinetobacter radioresistens SK82 0.56 MPMX26_00765 Transcription elongation factor GreA 0.32 MPMX26_02428 [Ribosomal protein S18]-alanine N-acetyltransferase 0.83 1
Rahnella sp. WP5 0.56 EX31_RS08595 transcription elongation factor GreA 0.32 EX31_RS04110 ribosomal protein S18-alanine N-acetyltransferase low > 89
Erwinia tracheiphila SCR3 0.54 LU632_RS21165 greA transcription elongation factor GreA 0.27 LU632_RS03760 rimI ribosomal protein S18-alanine N-acetyltransferase low > 74
Vibrio cholerae E7946 ATCC 55056 0.53 CSW01_03330 transcription elongation factor GreA 0.36 CSW01_03460 ribosomal-protein-alanine N-acetyltransferase low > 62
Xanthomonas campestris pv. campestris strain 8004 0.52 Xcc-8004.2911.1 Transcription elongation factor GreA 0.46 Xcc-8004.4455.1 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) low > 74
Lysobacter sp. OAE881 0.51 ABIE51_RS11610 transcription elongation factor GreA 0.42 ABIE51_RS04455 ribosomal protein S18-alanine N-acetyltransferase low > 62
Dinoroseobacter shibae DFL-12 0.50 Dshi_3076 transcription elongation factor GreA (RefSeq) 0.19 Dshi_2841 ribosomal-protein-alanine acetyltransferase (RefSeq) low > 64
Acidovorax sp. GW101-3H11 0.49 Ac3H11_437 Transcription elongation factor GreA 0.35 Ac3H11_667 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) low > 79
Dechlorosoma suillum PS 0.49 Dsui_3063 transcription elongation factor GreA 0.40 Dsui_2404 ribosomal-protein-alanine acetyltransferase low > 51
Herbaspirillum seropedicae SmR1 0.48 HSERO_RS06930 transcription elongation factor GreA 0.40 HSERO_RS10720 alanine acetyltransferase — —
Brevundimonas sp. GW460-12-10-14-LB2 0.48 A4249_RS00695 transcription elongation factor GreA 0.23 A4249_RS14730 GNAT family N-acetyltransferase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.47 GFF4897 Transcription elongation factor GreA 0.35 GFF2766 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) 0.67 24
Ralstonia solanacearum PSI07 0.47 RPSI07_RS15260 transcription elongation factor GreA 0.33 RPSI07_RS17290 ribosomal-protein-alanine N-acetyltransferase — —
Paraburkholderia sabiae LMG 24235 0.47 QEN71_RS04785 transcription elongation factor GreA 0.36 QEN71_RS06290 ribosomal protein S18-alanine N-acetyltransferase low > 153
Cupriavidus basilensis FW507-4G11 0.47 RR42_RS13505 transcription elongation factor GreA 0.38 RR42_RS12055 acyltransferase — —
Phaeobacter inhibens DSM 17395 0.47 PGA1_c03290 transcription elongation factor GreA 0.21 PGA1_c03980 putative acetyltransferase low > 62
Paraburkholderia graminis OAS925 0.46 ABIE53_003003 transcription elongation factor GreA 0.38 ABIE53_002532 ribosomal-protein-alanine N-acetyltransferase low > 113
Burkholderia phytofirmans PsJN 0.46 BPHYT_RS14185 transcription elongation factor GreA 0.32 BPHYT_RS12265 alanine acetyltransferase low > 109
Ralstonia solanacearum UW163 0.46 UW163_RS15495 transcription elongation factor GreA 0.32 UW163_RS13520 ribosomal-protein-alanine N-acetyltransferase — —
Paraburkholderia bryophila 376MFSha3.1 0.46 H281DRAFT_04404 GreA/GreB family elongation factor 0.31 H281DRAFT_00584 [SSU ribosomal protein S18P]-alanine acetyltransferase low > 103
Ralstonia solanacearum IBSBF1503 0.46 RALBFv3_RS02185 transcription elongation factor GreA 0.32 RALBFv3_RS00190 ribosomal-protein-alanine N-acetyltransferase — —
Caulobacter crescentus NA1000 0.46 CCNA_02941 transcription elongation factor greA 0.23 CCNA_00056 ribosomal-protein-S18-alanine acetyltransferase low > 66
Caulobacter crescentus NA1000 Δfur 0.46 CCNA_02941 transcription elongation factor greA 0.23 CCNA_00056 ribosomal-protein-S18-alanine acetyltransferase low > 67
Ralstonia solanacearum GMI1000 0.46 RS_RS07635 transcription elongation factor GreA 0.30 RS_RS06860 ribosomal-protein-alanine N-acetyltransferase — —
Desulfovibrio vulgaris Hildenborough JW710 0.45 DVU3245 greA transcription elongation factor GreA (TIGR) 0.19 DVU1678 rimI ribosomal-protein-alanine acetyltransferase (TIGR) low > 55
Variovorax sp. SCN45 0.45 GFF374 Transcription elongation factor GreA 0.29 GFF5521 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.128) low > 127
Sinorhizobium meliloti 1021 0.45 SMc01218 transcription elongation factor GreA 0.20 SMc01117 acetyltransferase — —
Agrobacterium fabrum C58 0.45 Atu2182 transcription elongation facto 0.20 Atu0353 acetyltransferase — —
Variovorax sp. OAS795 0.45 ABID97_RS17070 transcription elongation factor GreA 0.29 ABID97_RS01660 ribosomal protein S18-alanine N-acetyltransferase low > 91
Rhodopseudomonas palustris CGA009 0.42 TX73_021095 transcription elongation factor GreA 0.18 TX73_002340 ribosomal protein S18-alanine N-acetyltransferase — —
Rhodanobacter sp. FW510-T8 0.40 OKGIIK_07290 greA transcription elongation factor GreA 0.30 OKGIIK_11225 rimI ribosomal protein S18-alanine N-acetyltransferase low > 52
Rhodanobacter denitrificans FW104-10B01 0.39 LRK54_RS18005 transcription elongation factor GreA 0.31 LRK54_RS04340 ribosomal protein S18-alanine N-acetyltransferase low > 59
Rhodanobacter denitrificans MT42 0.39 LRK55_RS17860 transcription elongation factor GreA 0.31 LRK55_RS04115 ribosomal protein S18-alanine N-acetyltransferase low > 63
Dyella japonica UNC79MFTsu3.2 0.39 ABZR86_RS05595 transcription elongation factor GreA 0.32 ABZR86_RS10505 ribosomal protein S18-alanine N-acetyltransferase low > 74

Not shown: 21 genomes with orthologs for PP_4722 only; 2 genomes with orthologs for PP_0697 only