Conservation of cofitness between PP_0832 and PP_0697 in Pseudomonas putida KT2440

76 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_0832 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 1.0 PP_0697 ribosomal-protein-S18-alanine N-acetyltransferase 0.43 6
Pseudomonas fluorescens FW300-N2E3 0.91 AO353_15785 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.84 AO353_14585 ribosomal-protein-alanine acetyltransferase 0.36 49
Pseudomonas syringae pv. syringae B728a ΔmexB 0.89 Psyr_1227 Queuosine biosynthesis protein 0.80 Psyr_0857 [SSU ribosomal protein S18P]-alanine acetyltransferase low > 86
Pseudomonas fluorescens GW456-L13 0.89 PfGW456L13_4883 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) 0.81 PfGW456L13_1551 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) low > 87
Pseudomonas syringae pv. syringae B728a 0.89 Psyr_1227 Queuosine biosynthesis protein 0.80 Psyr_0857 [SSU ribosomal protein S18P]-alanine acetyltransferase low > 86
Pseudomonas fluorescens FW300-N1B4 0.89 Pf1N1B4_3005 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) 0.81 Pf1N1B4_2891 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) low > 87
Pseudomonas fluorescens SBW25-INTG 0.88 PFLU_RS24905 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.82 PFLU_RS03395 ribosomal-protein-alanine N-acetyltransferase low > 109
Pseudomonas fluorescens SBW25 0.88 PFLU_RS24905 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.82 PFLU_RS03395 ribosomal-protein-alanine N-acetyltransferase 0.73 37
Pseudomonas fluorescens FW300-N2C3 0.87 AO356_06695 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.82 AO356_16260 ribosomal-protein-alanine acetyltransferase low > 104
Pseudomonas fluorescens FW300-N2E2 0.87 Pf6N2E2_3199 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) 0.82 Pf6N2E2_5188 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) low > 103
Pseudomonas sp. RS175 0.87 PFR28_00276 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.82 PFR28_03681 [Ribosomal protein S18]-alanine N-acetyltransferase low > 88
Pseudomonas simiae WCS417 0.87 PS417_23250 S-adenosylmethionine tRNA ribosyltransferase 0.81 PS417_03300 alanine acetyltransferase low > 88
Pseudomonas sp. S08-1 0.86 OH686_17425 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.75 OH686_08035 ribosomal-protein-alanine acetyltransferase low > 80
Pseudomonas stutzeri RCH2 0.83 Psest_1241 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.81 Psest_1058 ribosomal-protein-alanine acetyltransferase 0.24 51
Shewanella oneidensis MR-1 0.71 SO3114 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (NCBI ptt file) 0.28 SO1160 rimI ribosomal-protein-alanine acetyltransferase (NCBI ptt file) low > 76
Serratia liquefaciens MT49 0.71 IAI46_04835 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.35 IAI46_02870 ribosomal protein S18-alanine N-acetyltransferase 0.51 32
Shewanella loihica PV-4 0.70 Shew_2338 S-adenosylmethionine--tRNA-ribosyltransferase-isomerase (RefSeq) 0.29 Shew_2943 ribosomal-protein-alanine acetyltransferase (RefSeq) — —
Enterobacter asburiae PDN3 0.70 EX28DRAFT_2566 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.31 EX28DRAFT_3581 ribosomal-protein-alanine acetyltransferase low > 76
Rahnella sp. WP5 0.70 EX31_RS22090 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.32 EX31_RS04110 ribosomal protein S18-alanine N-acetyltransferase low > 89
Dickeya dianthicola ME23 0.70 DZA65_RS05850 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.34 DZA65_RS03375 ribosomal protein S18-alanine N-acetyltransferase low > 75
Shewanella sp. ANA-3 0.70 Shewana3_1434 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (RefSeq) 0.29 Shewana3_0987 SSU ribosomal protein S18P alanine acetyltransferase (RefSeq) — —
Klebsiella michiganensis M5al 0.70 BWI76_RS06295 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.29 BWI76_RS04090 ribosomal-protein-alanine N-acetyltransferase RimI low > 92
Dickeya dianthicola 67-19 0.70 HGI48_RS05525 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.34 HGI48_RS03330 ribosomal protein S18-alanine N-acetyltransferase low > 71
Pantoea sp. MT58 0.70 IAI47_14810 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.33 IAI47_16365 ribosomal protein S18-alanine N-acetyltransferase low > 76
Escherichia coli ECRC62 0.70 BNILDI_22860 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.31 BNILDI_07990 rimI ribosomal protein S18-alanine N-acetyltransferase — —
Dickeya dadantii 3937 0.70 DDA3937_RS05465 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.34 DDA3937_RS03180 ribosomal protein S18-alanine N-acetyltransferase low > 74
Escherichia coli BL21 0.70 ECD_00353 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.31 ECD_04248 ribosomal-protein-S18-alanine N-acetyltransferase low > 60
Escherichia coli HS(pFamp)R (ATCC 700891) 0.70 OHPLBJKB_03271 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.31 OHPLBJKB_03689 Ribosomal-protein-alanine acetyltransferase low > 73
Escherichia coli ECOR27 0.70 NOLOHH_01445 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.31 NOLOHH_03610 rimI ribosomal protein S18-alanine N-acetyltransferase low > 57
Escherichia coli ECRC102 0.70 NIAGMN_06565 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.31 NIAGMN_09140 rimI ribosomal protein S18-alanine N-acetyltransferase — —
Escherichia coli ECRC101 0.70 MCAODC_27735 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.31 MCAODC_01805 rimI ribosomal protein S18-alanine N-acetyltransferase — —
Escherichia coli BW25113 0.70 b0405 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (NCBI) 0.31 b4373 rimI ribosomal-protein-alanine N-acetyltransferase (NCBI) low > 76
Escherichia coli ECRC99 0.70 KEDOAH_19455 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.31 KEDOAH_16855 rimI ribosomal protein S18-alanine N-acetyltransferase — —
Escherichia coli ECRC98 0.70 JDDGAC_12165 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.31 JDDGAC_14885 rimI ribosomal protein S18-alanine N-acetyltransferase — —
Escherichia coli ECRC101 0.70 OKFHMN_08510 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.31 OKFHMN_11290 rimI ribosomal protein S18-alanine N-acetyltransferase — —
Escherichia fergusonii Becca 0.70 EFB2_03652 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.31 EFB2_04074 [Ribosomal protein S18]-alanine N-acetyltransferase low > 86
Enterobacter sp. TBS_079 0.69 MPMX20_00996 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.29 MPMX20_00671 [Ribosomal protein S18]-alanine N-acetyltransferase low > 85
Escherichia coli ECOR38 0.69 HEPCGN_07150 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.31 HEPCGN_09295 rimI ribosomal protein S18-alanine N-acetyltransferase low > 85
Escherichia coli Nissle 1917 0.69 ECOLIN_RS02440 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.31 ECOLIN_RS25100 ribosomal protein S18-alanine N-acetyltransferase — —
Erwinia tracheiphila SCR3 0.69 LU632_RS18485 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.27 LU632_RS03760 rimI ribosomal protein S18-alanine N-acetyltransferase low > 74
Shewanella amazonensis SB2B 0.69 Sama_2194 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (RefSeq) 0.31 Sama_2596 ribosomal-protein-alanine acetyltransferase (RefSeq) 0.41 35
Pectobacterium carotovorum WPP14 0.69 HER17_RS15995 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.34 HER17_RS18090 ribosomal protein S18-alanine N-acetyltransferase low > 75
Vibrio cholerae E7946 ATCC 55056 0.68 CSW01_03840 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.36 CSW01_03460 ribosomal-protein-alanine N-acetyltransferase low > 62
Marinobacter adhaerens HP15 0.66 HP15_1478 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.38 HP15_540 ribosomal-protein-alanine acetyltransferase low > 73
Kangiella aquimarina DSM 16071 0.61 B158DRAFT_2515 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.33 B158DRAFT_2236 [SSU ribosomal protein S18P]-alanine acetyltransferase (EC 2.3.1.128) low > 40
Cupriavidus basilensis FW507-4G11 0.55 RR42_RS17395 S-adenosylmethionine tRNA ribosyltransferase 0.38 RR42_RS12055 acyltransferase low > 128
Ralstonia solanacearum GMI1000 0.55 RS_RS13570 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.30 RS_RS06860 ribosomal-protein-alanine N-acetyltransferase — —
Herbaspirillum seropedicae SmR1 0.54 HSERO_RS06170 S-adenosylmethionine tRNA ribosyltransferase 0.40 HSERO_RS10720 alanine acetyltransferase low > 78
Ralstonia solanacearum PSI07 0.54 RPSI07_RS11620 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.33 RPSI07_RS17290 ribosomal-protein-alanine N-acetyltransferase — —
Ralstonia solanacearum UW163 0.54 UW163_RS07945 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.32 UW163_RS13520 ribosomal-protein-alanine N-acetyltransferase — —
Ralstonia solanacearum IBSBF1503 0.54 RALBFv3_RS05680 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.32 RALBFv3_RS00190 ribosomal-protein-alanine N-acetyltransferase — —
Xanthomonas campestris pv. campestris strain 8004 0.54 Xcc-8004.2167.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) 0.46 Xcc-8004.4455.1 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) low > 74
Rhodanobacter denitrificans FW104-10B01 0.54 LRK54_RS03135 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.31 LRK54_RS04340 ribosomal protein S18-alanine N-acetyltransferase low > 59
Rhodanobacter denitrificans MT42 0.54 LRK55_RS02885 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.31 LRK55_RS04115 ribosomal protein S18-alanine N-acetyltransferase low > 63
Acinetobacter radioresistens SK82 0.53 MPMX26_00441 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.32 MPMX26_02428 [Ribosomal protein S18]-alanine N-acetyltransferase low > 36
Rhodanobacter sp. FW510-T8 0.53 OKGIIK_10005 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.30 OKGIIK_11225 rimI ribosomal protein S18-alanine N-acetyltransferase low > 52
Variovorax sp. OAS795 0.51 ABID97_RS01590 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.29 ABID97_RS01660 ribosomal protein S18-alanine N-acetyltransferase low > 91
Lysobacter sp. OAE881 0.51 ABIE51_RS15025 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.42 ABIE51_RS04455 ribosomal protein S18-alanine N-acetyltransferase low > 62
Dyella japonica UNC79MFTsu3.2 0.51 ABZR86_RS09545 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.32 ABZR86_RS10505 ribosomal protein S18-alanine N-acetyltransferase low > 74
Variovorax sp. SCN45 0.50 GFF5535 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 2.4.99.17) 0.29 GFF5521 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.128) low > 127
Dechlorosoma suillum PS 0.50 Dsui_3322 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.40 Dsui_2404 ribosomal-protein-alanine acetyltransferase low > 51
Burkholderia phytofirmans PsJN 0.50 BPHYT_RS03405 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.32 BPHYT_RS12265 alanine acetyltransferase low > 109
Acidovorax sp. GW101-3H11 0.49 Ac3H11_778 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) 0.35 Ac3H11_667 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) low > 79
Paraburkholderia sabiae LMG 24235 0.49 QEN71_RS26635 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.36 QEN71_RS06290 ribosomal protein S18-alanine N-acetyltransferase low > 153
Paraburkholderia bryophila 376MFSha3.1 0.48 H281DRAFT_04671 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.31 H281DRAFT_00584 [SSU ribosomal protein S18P]-alanine acetyltransferase low > 103
Paraburkholderia graminis OAS925 0.48 ABIE53_000832 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.38 ABIE53_002532 ribosomal-protein-alanine N-acetyltransferase low > 113
Hydrogenophaga sp. GW460-11-11-14-LB1 0.48 GFF2801 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) 0.35 GFF2766 Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) 0.37 54
Brevundimonas sp. GW460-12-10-14-LB2 0.41 A4249_RS08775 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.23 A4249_RS14730 GNAT family N-acetyltransferase low > 48
Desulfovibrio vulgaris Hildenborough JW710 0.41 DVU3351 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (TIGR) 0.19 DVU1678 rimI ribosomal-protein-alanine acetyltransferase (TIGR) low > 55
Rhizobium sp. OAE497 0.40 ABIE40_RS09430 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.21 ABIE40_RS01720 N-acetyltransferase low > 107
Agrobacterium fabrum C58 0.39 Atu1678 S-adenosylmethionine tRNA ribosyltransferase-isomerase 0.20 Atu0353 acetyltransferase low > 89
Dinoroseobacter shibae DFL-12 0.39 Dshi_1180 Queuosine biosynthesis protein (RefSeq) 0.19 Dshi_2841 ribosomal-protein-alanine acetyltransferase (RefSeq) low > 64
Sinorhizobium meliloti 1021 0.39 SMc01207 S-adenosylmethionine--tRNA ribosyltransferase-isomerase 0.20 SMc01117 acetyltransferase — —
Caulobacter crescentus NA1000 0.38 CCNA_01658 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.23 CCNA_00056 ribosomal-protein-S18-alanine acetyltransferase low > 66
Caulobacter crescentus NA1000 Δfur 0.38 CCNA_01658 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.23 CCNA_00056 ribosomal-protein-S18-alanine acetyltransferase low > 67
Phaeobacter inhibens DSM 17395 0.38 PGA1_c17420 S-adenosylmethionine:tRNA ribosyltransferase-isomerase QueA 0.21 PGA1_c03980 putative acetyltransferase low > 62
Rhodopseudomonas palustris CGA009 0.35 TX73_013480 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.18 TX73_002340 ribosomal protein S18-alanine N-acetyltransferase low > 86

Not shown: 23 genomes with orthologs for PP_0832 only; 1 genomes with orthologs for PP_0697 only