Conservation of cofitness between PP_0422 and PP_0082 in Pseudomonas putida KT2440

65 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_0422 Indole-3-glycerol phosphate synthase 1.0 PP_0082 tryptophan synthase alpha chain 0.84 20
Pseudomonas fluorescens FW300-N2E2 0.88 Pf6N2E2_4826 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) 0.80 Pf6N2E2_4047 Tryptophan synthase alpha chain (EC 4.2.1.20) 0.94 11
Pseudomonas fluorescens FW300-N1B4 0.87 Pf1N1B4_2549 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) 0.79 Pf1N1B4_1830 Tryptophan synthase alpha chain (EC 4.2.1.20) 0.93 4
Pseudomonas fluorescens GW456-L13 0.87 PfGW456L13_1222 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) 0.82 PfGW456L13_565 Tryptophan synthase alpha chain (EC 4.2.1.20) 0.97 4
Pseudomonas fluorescens FW300-N2C3 0.87 AO356_14440 indole-3-glycerol-phosphate synthase 0.80 AO356_10910 tryptophan synthase subunit alpha 0.94 8
Pseudomonas sp. RS175 0.87 PFR28_04043 Indole-3-glycerol phosphate synthase 0.78 PFR28_04716 Tryptophan synthase alpha chain
Pseudomonas simiae WCS417 0.86 PS417_25710 indole-3-glycerol-phosphate synthase 0.81 PS417_00180 tryptophan synthase subunit alpha 0.75 28
Pseudomonas fluorescens FW300-N2E3 0.86 AO353_07210 indole-3-glycerol-phosphate synthase 0.80 AO353_10705 tryptophan synthase subunit alpha 0.88 17
Pseudomonas fluorescens SBW25-INTG 0.84 PFLU_RS27365 indole-3-glycerol phosphate synthase TrpC 0.81 PFLU_RS00175 tryptophan synthase subunit alpha 0.85 9
Pseudomonas fluorescens SBW25 0.84 PFLU_RS27365 indole-3-glycerol phosphate synthase TrpC 0.81 PFLU_RS00175 tryptophan synthase subunit alpha low > 109
Pseudomonas syringae pv. syringae B728a ΔmexB 0.82 Psyr_4579 indole-3-glycerol phosphate synthase 0.90 Psyr_0033 tryptophan synthase, alpha chain low > 86
Pseudomonas syringae pv. syringae B728a 0.82 Psyr_4579 indole-3-glycerol phosphate synthase 0.90 Psyr_0033 tryptophan synthase, alpha chain low > 86
Pseudomonas sp. S08-1 0.81 OH686_15140 Indole-3-glycerol phosphate synthase 0.79 OH686_12430 tryptophan synthase, alpha subunit 0.90 4
Pseudomonas stutzeri RCH2 0.77 Psest_3647 Indole-3-glycerol phosphate synthase 0.76 Psest_0062 tryptophan synthase, alpha subunit 0.89 4
Marinobacter adhaerens HP15 0.62 HP15_3291 indole-3-glycerol phosphate synthase 0.45 HP15_1826 tryptophan synthase, alpha subunit
Xanthomonas campestris pv. campestris strain 8004 0.58 Xcc-8004.622.1 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) 0.36 Xcc-8004.1967.1 Tryptophan synthase alpha chain (EC 4.2.1.20) 0.94 6
Lysobacter sp. OAE881 0.53 ABIE51_RS04190 indole-3-glycerol phosphate synthase TrpC 0.39 ABIE51_RS08265 tryptophan synthase subunit alpha 0.89 3
Paraburkholderia sabiae LMG 24235 0.53 QEN71_RS27565 indole-3-glycerol phosphate synthase TrpC 0.39 QEN71_RS17655 tryptophan synthase subunit alpha 0.96 5
Rhodanobacter sp. FW510-T8 0.52 OKGIIK_12280 trpC indole-3-glycerol phosphate synthase TrpC 0.40 OKGIIK_04850 trpA tryptophan synthase subunit alpha low > 52
Cupriavidus basilensis FW507-4G11 0.51 RR42_RS18310 indole-3-glycerol-phosphate synthase 0.42 RR42_RS14350 tryptophan synthase alpha chain
Burkholderia phytofirmans PsJN 0.51 BPHYT_RS17405 indole-3-glycerol phosphate synthase 0.40 BPHYT_RS33865 tryptophan synthase alpha chain 0.84 11
Castellaniella sp019104865 MT123 0.51 ABCV34_RS10310 indole-3-glycerol phosphate synthase TrpC 0.39 ABCV34_RS08430 tryptophan synthase subunit alpha
Dechlorosoma suillum PS 0.51 Dsui_0168 Indole-3-glycerol phosphate synthase 0.45 Dsui_3191 tryptophan synthase, alpha subunit
Hydrogenophaga sp. GW460-11-11-14-LB1 0.50 GFF3111 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) 0.42 GFF3354 Tryptophan synthase alpha chain (EC 4.2.1.20) 0.91 9
Paraburkholderia graminis OAS925 0.50 ABIE53_003643 indole-3-glycerol phosphate synthase 0.42 ABIE53_004811 tryptophan synthase alpha chain
Variovorax sp. OAS795 0.50 ABID97_RS05280 indole-3-glycerol phosphate synthase TrpC 0.40 ABID97_RS08425 tryptophan synthase subunit alpha 0.66 4
Dyella japonica UNC79MFTsu3.2 0.50 ABZR86_RS12065 indole-3-glycerol phosphate synthase TrpC 0.41 ABZR86_RS07995 tryptophan synthase subunit alpha 0.90 47
Paraburkholderia bryophila 376MFSha3.1 0.50 H281DRAFT_05712 indole-3-glycerol phosphate synthase 0.39 H281DRAFT_06065 tryptophan synthase, alpha chain 0.57 24
Ralstonia solanacearum IBSBF1503 0.49 RALBFv3_RS06505 indole-3-glycerol phosphate synthase TrpC 0.42 RALBFv3_RS02575 tryptophan synthase subunit alpha
Ralstonia sp. UNC404CL21Col 0.49 ABZR87_RS02160 indole-3-glycerol phosphate synthase TrpC 0.43 ABZR87_RS14490 tryptophan synthase subunit alpha 0.88 7
Ralstonia solanacearum UW163 0.49 UW163_RS07120 indole-3-glycerol phosphate synthase TrpC 0.42 UW163_RS11150 tryptophan synthase subunit alpha
Ralstonia solanacearum GMI1000 0.49 RS_RS14450 Indole-3-glycerol phosphate synthase 1 0.43 RS_RS09955 tryptophan synthase subunit alpha
Acidovorax sp. GW101-3H11 0.49 Ac3H11_772 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) 0.43 Ac3H11_1535 Tryptophan synthase alpha chain (EC 4.2.1.20) 0.98 5
Ralstonia solanacearum PSI07 0.49 RPSI07_RS10735 indole-3-glycerol phosphate synthase TrpC 0.43 RPSI07_RS14740 tryptophan synthase subunit alpha
Acinetobacter radioresistens SK82 0.49 MPMX26_00983 Indole-3-glycerol phosphate synthase 0.43 MPMX26_02611 Tryptophan synthase alpha chain
Variovorax sp. SCN45 0.48 GFF5890 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) 0.41 GFF3882 Tryptophan synthase alpha chain (EC 4.2.1.20)
Rhodanobacter denitrificans FW104-10B01 0.48 LRK54_RS11570 indole-3-glycerol phosphate synthase TrpC 0.40 LRK54_RS01680 tryptophan synthase, alpha subunit (EC 4.2.1.20) (from data) 0.82 1
Rhodanobacter denitrificans MT42 0.47 LRK55_RS11300 indole-3-glycerol phosphate synthase TrpC 0.40 LRK55_RS01460 tryptophan synthase subunit alpha low > 63
Rhizobium sp. OAE497 0.45 ABIE40_RS09550 indole-3-glycerol phosphate synthase TrpC 0.57 ABIE40_RS19340 tryptophan synthase subunit alpha
Herbaspirillum seropedicae SmR1 0.45 HSERO_RS19450 indole-3-glycerol-phosphate synthase 0.45 HSERO_RS16470 tryptophan synthase subunit alpha 0.75 35
Rhodospirillum rubrum S1H 0.45 Rru_A1897 Indole-3-glycerol-phosphate synthase (NCBI) 0.53 Rru_A3428 Tryptophan synthase (NCBI) 0.94 3
Phaeobacter inhibens DSM 17395 0.45 PGA1_c16910 indole-3-glycerol phosphate synthase TrpC 0.62 PGA1_c04930 tryptophan synthase alpha chain
Azospirillum sp. SherDot2 0.44 MPMX19_01014 Indole-3-glycerol phosphate synthase 0.59 MPMX19_02737 Tryptophan synthase alpha chain 0.73 18
Magnetospirillum magneticum AMB-1 0.44 AMB_RS14415 indole-3-glycerol phosphate synthase TrpC 0.59 AMB_RS20300 tryptophan synthase subunit alpha
Sphingomonas koreensis DSMZ 15582 0.44 Ga0059261_0930 indole-3-glycerol phosphate synthase (EC 4.1.1.48) 0.46 Ga0059261_0239 tryptophan synthase, alpha chain (EC 4.2.1.20) 0.91 48
Dinoroseobacter shibae DFL-12 0.44 Dshi_1800 Indole-3-glycerol-phosphate synthase (RefSeq) 0.60 Dshi_0952 tryptophan synthase, alpha subunit (RefSeq)
Rhodopseudomonas palustris CGA009 0.44 TX73_014985 indole-3-glycerol phosphate synthase TrpC 0.62 TX73_000365 tryptophan synthase subunit alpha
Azospirillum brasilense Sp245 0.42 AZOBR_RS07450 indole-3-glycerol-phosphate synthase 0.59 AZOBR_RS00520 tryptophan synthase subunit alpha 0.94 1
Brevundimonas sp. GW460-12-10-14-LB2 0.42 A4249_RS06175 indole-3-glycerol phosphate synthase TrpC 0.49 A4249_RS11320 tryptophan synthase subunit alpha
Caulobacter crescentus NA1000 0.42 CCNA_01976 Indole-3-glycerol phosphate synthase 0.50 CCNA_03657 tryptophan synthase alpha chain 0.96 4
Caulobacter crescentus NA1000 Δfur 0.42 CCNA_01976 Indole-3-glycerol phosphate synthase 0.50 CCNA_03657 tryptophan synthase alpha chain low > 67
Agrobacterium fabrum C58 0.41 Atu1688 indole-3-glycerol-phosphate synthase 0.57 Atu0019 tryptophan synthase alpha subunit
Bosea sp. OAE506 0.41 ABIE41_RS17425 indole-3-glycerol phosphate synthase TrpC 0.62 ABIE41_RS03930 tryptophan synthase subunit alpha
Sinorhizobium meliloti 1021 0.40 SMc00236 Indole-3-glycerol phosphate synthase 0.58 SMc02765 tryptophan synthase subunit alpha 0.95 5
Pedobacter sp. GW460-11-11-14-LB5 0.36 CA265_RS22900 indole-3-glycerol phosphate synthase 0.27 CA265_RS05025 tryptophan synthase, alpha subunit (EC 4.2.1.20) (from data)
Echinicola vietnamensis KMM 6221, DSM 17526 0.34 Echvi_2508 Indole-3-glycerol phosphate synthase 0.29 Echvi_2511 tryptophan synthase, alpha subunit
Synechococcus elongatus PCC 7942 0.33 Synpcc7942_1197 trpC indole-3-glycerol-phosphate synthase 0.36 Synpcc7942_0411 trpA tryptophan synthase subunit alpha
Bacteroides ovatus ATCC 8483 0.33 BACOVA_03783 indole-3-glycerol phosphate synthase 0.29 BACOVA_03785 tryptophan synthase, alpha subunit 0.96 1
Mucilaginibacter yixingensis YX-36 DSM 26809 0.33 ABZR88_RS16605 indole-3-glycerol phosphate synthase TrpC 0.27 ABZR88_RS10660 tryptophan synthase subunit alpha
Bacteroides thetaiotaomicron VPI-5482 0.32 BT0529 indole-3-glycerol phosphate synthase (NCBI ptt file) 0.28 BT0527 tryptophan synthase alpha chain (NCBI ptt file) 0.84 7
Parabacteroides merdae CL09T00C40 0.28 HMPREF1078_RS00130 indole-3-glycerol phosphate synthase TrpC 0.26 HMPREF1078_RS00120 tryptophan synthase subunit alpha 0.95 26
Mycobacterium tuberculosis H37Rv 0.28 Rv1611 Probable indole-3-glycerol phosphate synthase TrpC 0.27 Rv1613 Probable tryptophan synthase, alpha subunit TrpA
Bacteroides stercoris CC31F 0.27 HMPREF1181_RS15340 indole-3-glycerol phosphate synthase TrpC 0.26 HMPREF1181_RS15350 tryptophan synthase subunit alpha 0.96 4
Phocaeicola dorei CL03T12C01 0.24 ABI39_RS21065 indole-3-glycerol phosphate synthase TrpC 0.26 ABI39_RS21075 tryptophan synthase subunit alpha 0.79 8
Pontibacter actiniarum KMM 6156, DSM 19842 0.23 CA264_05070 indole-3-glycerol phosphate synthase 0.28 CA264_05085 tryptophan synthase subunit alpha low > 74
Desulfovibrio vulgaris Hildenborough JW710 0.20 DVU0468 trpC indole-3-glycerol phosphate synthase (TIGR) 0.32 DVU0471 trpA tryptophan synthase, alpha subunit (TIGR) 0.97 4

Not shown: 0 genomes with orthologs for PP_0422 only; 37 genomes with orthologs for PP_0082 only