| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Serratia liquefaciens MT49 | 1.0 | IAI46_03985 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 1.0 | IAI46_24825 | | DNA repair protein RadC | 0.62 | 16 |
| Rahnella sp. WP5 | 0.92 | EX31_RS07570 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.64 | EX31_RS14470 | | JAB domain-containing protein | low | > 89 |
| Pectobacterium carotovorum WPP14 | 0.91 | HER17_RS05400 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.72 | HER17_RS20830 | | DNA repair protein RadC | low | > 75 |
| Dickeya dadantii 3937 | 0.91 | DDA3937_RS16110 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.75 | DDA3937_RS20515 | | DNA repair protein RadC | low | > 74 |
| Dickeya dianthicola 67-19 | 0.90 | HGI48_RS16235 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.74 | HGI48_RS00700 | | DNA repair protein RadC | low | > 71 |
| Dickeya dianthicola ME23 | 0.90 | DZA65_RS17330 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.74 | DZA65_RS00755 | | JAB domain-containing protein | low | > 75 |
| Pantoea sp. MT58 | 0.89 | IAI47_04425 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.63 | IAI47_00620 | | DNA repair protein RadC | low | > 76 |
| Escherichia coli ECRC99 | 0.88 | KEDOAH_06970 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.58 | KEDOAH_12530 | radC | DNA repair protein RadC | — | — |
| Escherichia coli ECOR38 | 0.88 | HEPCGN_20375 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.58 | HEPCGN_14445 | radC | DNA repair protein RadC | low | > 85 |
| Escherichia coli ECRC101 | 0.88 | OKFHMN_21250 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.58 | OKFHMN_15620 | radC | DNA repair protein RadC | — | — |
| Escherichia coli BL21 | 0.88 | ECD_02484 | | 23S rRNA pseudouridine(1911,1915,1917) synthase | 0.57 | ECD_03495 | | UPF0758 family protein | low | > 60 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.88 | OHPLBJKB_01112 | | Ribosomal large subunit pseudouridine synthase D | 0.57 | OHPLBJKB_00064 | | hypothetical protein | low | > 73 |
| Escherichia fergusonii Becca | 0.88 | EFB2_01296 | | Ribosomal large subunit pseudouridine synthase D | 0.58 | EFB2_00175 | | hypothetical protein | low | > 86 |
| Escherichia coli ECRC102 | 0.88 | NIAGMN_19020 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.58 | NIAGMN_13380 | radC | DNA repair protein RadC | — | — |
| Escherichia coli BW25113 | 0.88 | b2594 | rluD | 23S rRNA pseudouridine synthase (NCBI) | 0.58 | b3638 | radC | DNA repair protein (VIMSS) | — | — |
| Escherichia coli ECRC98 | 0.88 | JDDGAC_24915 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.58 | JDDGAC_19245 | radC | DNA repair protein RadC | — | — |
| Escherichia coli Nissle 1917 | 0.88 | ECOLIN_RS14675 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.58 | ECOLIN_RS20730 | | DNA repair protein RadC | low | > 52 |
| Escherichia coli ECRC101 | 0.88 | MCAODC_11780 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.58 | MCAODC_06130 | radC | DNA repair protein RadC | — | — |
| Enterobacter sp. TBS_079 | 0.88 | MPMX20_03463 | | Ribosomal large subunit pseudouridine synthase D | 0.57 | MPMX20_00097 | | hypothetical protein | low | > 85 |
| Klebsiella michiganensis M5al | 0.87 | BWI76_RS21450 | | 23S rRNA pseudouridine(1911/1915/1917) synthase | 0.60 | BWI76_RS27365 | | hypothetical protein | low | > 92 |
| Escherichia coli ECRC62 | 0.87 | BNILDI_11730 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.58 | BNILDI_04015 | radC | DNA repair protein RadC | — | — |
| Escherichia coli ECOR27 | 0.87 | NOLOHH_12925 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.58 | NOLOHH_07500 | radC | DNA repair protein RadC | low | > 57 |
| Enterobacter asburiae PDN3 | 0.87 | EX28DRAFT_2695 | | pseudouridine synthase, RluA family | 0.58 | EX28DRAFT_3888 | | DNA repair protein radc | low | > 76 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.87 | GFF4182 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.60 | GFF371 | | DNA repair protein RadC | low | > 78 |
| Erwinia tracheiphila SCR3 | 0.86 | LU632_RS16945 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.58 | LU632_RS21995 | radC | DNA repair protein RadC | low | > 74 |
| Vibrio cholerae E7946 ATCC 55056 | 0.70 | CSW01_03695 | | ribosomal large subunit pseudouridine synthase D | 0.53 | CSW01_01155 | | DNA repair protein RadC | low | > 62 |
| Alteromonas macleodii MIT1002 | 0.66 | MIT1002_02679 | | Ribosomal large subunit pseudouridine synthase D | 0.42 | MIT1002_00049 | | DNA repair protein RadC | low | > 70 |
| Shewanella sp. ANA-3 | 0.65 | Shewana3_3171 | | ribosomal large subunit pseudouridine synthase D (RefSeq) | 0.43 | Shewana3_3770 | radC | DNA repair protein RadC (RefSeq) | low | > 73 |
| Shewanella loihica PV-4 | 0.64 | Shew_2950 | | RluA family pseudouridine synthase (RefSeq) | 0.47 | Shew_3481 | | DNA repair protein RadC (RefSeq) | 0.64 | 3 |
| Shewanella amazonensis SB2B | 0.62 | Sama_2605 | | pseudouridylate synthase (RefSeq) | 0.47 | Sama_0327 | radC | DNA repair protein RadC (RefSeq) | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.56 | AO356_15925 | | ribosomal large subunit pseudouridine synthase D | 0.47 | AO356_12545 | | hypothetical protein | low | > 104 |
| Pseudomonas sp. S08-1 | 0.55 | OH686_16410 | | LSU rRNA pseudouridine(1911/1915/1917) synthase | 0.45 | OH686_13620 | | UPF0758 family protein | low | > 80 |
| Pseudomonas putida KT2440 | 0.55 | PP_0623 | | 23S rRNA pseudouridine(1911,1915,1917) synthase | 0.44 | PP_5284 | | UPF0758 protein PP_5284 | — | — |
| Pseudomonas sp. RS175 | 0.55 | PFR28_03748 | | Ribosomal large subunit pseudouridine synthase D | 0.47 | PFR28_04412 | | hypothetical protein | low | > 88 |
| Pseudomonas simiae WCS417 | 0.55 | PS417_03820 | | ribosomal large subunit pseudouridine synthase D | 0.46 | PS417_27770 | | hypothetical protein | — | — |
| Pseudomonas fluorescens SBW25 | 0.55 | PFLU_RS03870 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.47 | PFLU_RS29445 | | JAB domain-containing protein | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.55 | PFLU_RS03870 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.47 | PFLU_RS29445 | | JAB domain-containing protein | low | > 109 |
| Pseudomonas fluorescens FW300-N2E3 | 0.55 | AO353_14220 | | ribosomal large subunit pseudouridine synthase D | 0.48 | AO353_09220 | | hypothetical protein | low | > 101 |
| Pseudomonas fluorescens FW300-N2E2 | 0.55 | Pf6N2E2_5127 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.48 | Pf6N2E2_4377 | | DNA repair protein RadC | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.55 | PfGW456L13_1493 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.43 | PfGW456L13_798 | | DNA repair protein RadC | — | — |
| Kangiella aquimarina DSM 16071 | 0.54 | B158DRAFT_2532 | | Pseudouridylate synthases, 23S RNA-specific | 0.47 | B158DRAFT_0781 | | DNA repair protein radc | low | > 40 |
| Pseudomonas syringae pv. syringae B728a | 0.54 | Psyr_0726 | | ribosomal large subunit pseudouridine synthase D | 0.45 | Psyr_0222 | | DNA replication and repair protein RadC | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.54 | Psyr_0726 | | ribosomal large subunit pseudouridine synthase D | 0.45 | Psyr_0222 | | DNA replication and repair protein RadC | low | > 86 |
| Pseudomonas fluorescens FW300-N1B4 | 0.54 | Pf1N1B4_2822 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.47 | Pf1N1B4_2126 | | DNA repair protein RadC | — | — |
| Pseudomonas stutzeri RCH2 | 0.54 | Psest_0709 | | pseudouridine synthase, RluA family | 0.49 | Psest_3803 | | DNA repair protein radc | low | > 67 |
| Lysobacter sp. OAE881 | 0.53 | ABIE51_RS04885 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.37 | ABIE51_RS00095 | | DNA repair protein RadC | low | > 62 |
| Marinobacter adhaerens HP15 | 0.52 | HP15_527 | | pseudouridine synthase, RluA family | 0.50 | HP15_3321 | | DNA repair protein RadC-like protein | low | > 73 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.52 | Xcc-8004.1362.1 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.41 | Xcc-8004.4897.1 | | DNA repair protein RadC | low | > 74 |
| Rhodanobacter denitrificans MT42 | 0.51 | LRK55_RS04745 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.41 | LRK55_RS08695 | | DNA repair protein RadC | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.51 | LRK54_RS04965 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.41 | LRK54_RS09165 | | DNA repair protein RadC | low | > 59 |
| Dyella japonica UNC79MFTsu3.2 | 0.50 | ABZR86_RS10965 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.41 | ABZR86_RS15615 | | DNA repair protein RadC | low | > 74 |
| Rhodanobacter sp. FW510-T8 | 0.48 | OKGIIK_01790 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.41 | OKGIIK_15660 | radC | DNA repair protein RadC | low | > 52 |
| Acinetobacter radioresistens SK82 | 0.42 | MPMX26_00735 | | Ribosomal large subunit pseudouridine synthase D | 0.34 | MPMX26_02636 | | hypothetical protein | — | — |
| Ralstonia solanacearum PSI07 | 0.41 | RPSI07_RS15970 | | RluA family pseudouridine synthase | 0.43 | RPSI07_RS12675 | | JAB domain-containing protein | low | > 81 |
| Ralstonia solanacearum IBSBF1503 | 0.41 | RALBFv3_RS01520 | | RluA family pseudouridine synthase | 0.44 | RALBFv3_RS04710 | | JAB domain-containing protein | low | > 76 |
| Ralstonia solanacearum GMI1000 | 0.41 | RS_RS08205 | | RluA family pseudouridine synthase | 0.44 | RS_RS12270 | | JAB domain-containing protein | low | > 80 |
| Ralstonia solanacearum UW163 | 0.41 | UW163_RS14830 | | RluA family pseudouridine synthase | 0.44 | UW163_RS08960 | | JAB domain-containing protein | — | — |
| Ralstonia sp. UNC404CL21Col | 0.39 | ABZR87_RS13315 | | RluA family pseudouridine synthase | 0.42 | ABZR87_RS00330 | | DNA repair protein RadC | low | > 80 |
| Herbaspirillum seropedicae SmR1 | 0.37 | HSERO_RS15070 | | ribosomal large subunit pseudouridine synthase D | 0.40 | HSERO_RS05945 | | hypothetical protein | low | > 78 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.35 | GFF4870 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.41 | GFF1170 | | DNA repair protein RadC | low | > 90 |
| Sphingomonas koreensis DSMZ 15582 | 0.35 | Ga0059261_0664 | | pseudouridine synthase, RluA family | 0.25 | Ga0059261_3175 | | DNA repair protein radc | low | > 68 |
| Rhodopseudomonas palustris CGA009 | 0.35 | TX73_001905 | | RluA family pseudouridine synthase | 0.25 | TX73_002000 | | DNA repair protein RadC | low | > 86 |
| Castellaniella sp019104865 MT123 | 0.34 | ABCV34_RS01885 | | RluA family pseudouridine synthase | 0.35 | ABCV34_RS00910 | | DNA repair protein RadC | low | > 48 |
| Rhodospirillum rubrum S1H | 0.34 | Rru_A1111 | | Pseudouridine synthase, RluD (NCBI) | 0.27 | Rru_A0732 | | DNA repair protein RadC (NCBI) | low | > 58 |
| Acidovorax sp. GW101-3H11 | 0.32 | Ac3H11_1787 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.34 | Ac3H11_1774 | | DNA repair protein RadC | low | > 79 |
| Phaeobacter inhibens DSM 17395 | 0.32 | PGA1_c09000 | | ribosomal large subunit pseudouridine synthase D | 0.30 | PGA1_c34550 | | DNA repair protein RadC | low | > 62 |
| Fusobacterium nucleatum SB010 | 0.31 | HUW76_08575 | | RluA family pseudouridine synthase | 0.25 | HUW76_05635 | | DNA repair protein RadC | low | > 35 |
| Variovorax sp. SCN45 | 0.31 | GFF988 | | LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23) | 0.36 | GFF5700 | | UPF0758 family protein | low | > 127 |
| Synechococcus elongatus PCC 7942 | 0.30 | Synpcc7942_1112 | | ribosomal large subunit pseudouridine synthase D | 0.25 | Synpcc7942_1227 | radC | DNA repair protein RadC | low | > 38 |
| Phocaeicola dorei CL03T12C01 | 0.29 | ABI39_RS02845 | | RluA family pseudouridine synthase | 0.26 | ABI39_RS02750 | | DNA repair protein RadC | low | > 72 |
| Variovorax sp. OAS795 | 0.29 | ABID97_RS14190 | | RluA family pseudouridine synthase | 0.35 | ABID97_RS07700 | | DNA repair protein RadC | low | > 91 |
| Phocaeicola vulgatus CL09T03C04 | 0.29 | HMPREF1058_RS08615 | | RluA family pseudouridine synthase | 0.26 | HMPREF1058_RS08525 | | DNA repair protein RadC | 0.70 | 61 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.29 | BT3712 | | ribosomal large subunit pseudouridine synthase D (NCBI ptt file) | 0.25 | BT3695 | | putative DNA repair protein (NCBI ptt file) | low | > 81 |
| Bosea sp. OAE506 | 0.29 | ABIE41_RS05635 | | RluA family pseudouridine synthase | 0.27 | ABIE41_RS13815 | | DNA repair protein RadC | low | > 77 |
| Bacteroides ovatus ATCC 8483 | 0.29 | BACOVA_03528 | | pseudouridine synthase, RluA family | 0.24 | BACOVA_03503 | | DNA repair protein RadC | low | > 94 |
| Bacteroides stercoris CC31F | 0.28 | HMPREF1181_RS03250 | | RluA family pseudouridine synthase | 0.23 | HMPREF1181_RS03225 | | DNA repair protein RadC | low | > 56 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.28 | CA264_15205 | | RNA pseudouridine synthase | 0.25 | CA264_13835 | | hypothetical protein | low | > 74 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.28 | ABZR88_RS03985 | | RluA family pseudouridine synthase | 0.23 | ABZR88_RS01715 | | DNA repair protein RadC | low | > 71 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.27 | CA265_RS14415 | | pseudouridine synthase | 0.23 | CA265_RS02725 | | hypothetical protein | low | > 88 |
| Dinoroseobacter shibae DFL-12 | 0.27 | Dshi_2610 | | pseudouridine synthase, RluA family (RefSeq) | 0.30 | Dshi_3569 | | DNA repair protein RadC (RefSeq) | low | > 64 |
| Parabacteroides merdae CL09T00C40 | 0.27 | HMPREF1078_RS12640 | | RluA family pseudouridine synthase | 0.22 | HMPREF1078_RS04930 | | DNA repair protein RadC | low | > 61 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.27 | A4249_RS10060 | | RluA family pseudouridine synthase | 0.27 | A4249_RS00510 | | DNA repair protein RadC | low | > 48 |
Not shown: 12 genomes with orthologs for IAI46_03985 only; 10 genomes with orthologs for IAI46_24825 only