Conservation of cofitness between HSERO_RS03350 and HSERO_RS11495 in Herbaspirillum seropedicae SmR1

82 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS03350 hypothetical protein 1.0 HSERO_RS11495 LacI family transcription regulator 0.25 15
Ralstonia sp. UNC404CL21Col 0.74 ABZR87_RS08070 pyruvate kinase 0.49 ABZR87_RS09955 LacI family DNA-binding transcriptional regulator 0.33 48
Burkholderia phytofirmans PsJN 0.73 BPHYT_RS16265 hypothetical protein 0.49 BPHYT_RS11205 LacI family transcription regulator low > 109
Paraburkholderia bryophila 376MFSha3.1 0.73 H281DRAFT_04189 pyruvate kinase 0.49 H281DRAFT_05228 transcriptional regulator, LacI family low > 103
Paraburkholderia graminis OAS925 0.73 ABIE53_003427 pyruvate kinase 0.49 ABIE53_002322 LacI family transcriptional regulator low > 113
Ralstonia solanacearum PSI07 0.73 RPSI07_RS21150 pyruvate kinase 0.48 RPSI07_RS19225 LacI family transcriptional regulator low > 81
Ralstonia solanacearum GMI1000 0.72 RS_RS02865 pyruvate kinase 0.48 RS_RS05020 LacI family transcriptional regulator low > 80
Ralstonia solanacearum UW163 0.72 UW163_RS01430 pyruvate kinase 0.48 UW163_RS11705 LacI family transcriptional regulator — —
Ralstonia solanacearum IBSBF1503 0.72 RALBFv3_RS12180 pyruvate kinase 0.48 RALBFv3_RS14240 LacI family transcriptional regulator low > 76
Paraburkholderia sabiae LMG 24235 0.72 QEN71_RS02430 pyruvate kinase 0.49 QEN71_RS07355 LacI family DNA-binding transcriptional regulator low > 153
Cupriavidus basilensis FW507-4G11 0.72 RR42_RS03210 pyruvate kinase 0.23 RR42_RS34650 LacI family transcriptional regulator low > 128
Hydrogenophaga sp. GW460-11-11-14-LB1 0.67 GFF2780 Pyruvate kinase (EC 2.7.1.40) 0.25 GFF4454 Transcriptional regulator, LacI family low > 90
Acidovorax sp. GW101-3H11 0.67 Ac3H11_654 Pyruvate kinase (EC 2.7.1.40) 0.44 Ac3H11_1840 Ribose operon repressor low > 79
Variovorax sp. SCN45 0.66 GFF5504 Pyruvate kinase (EC 2.7.1.40) 0.43 GFF2137 Ribose operon repressor low > 127
Variovorax sp. OAS795 0.65 ABID97_RS01755 pyruvate kinase 0.44 ABID97_RS24770 LacI family DNA-binding transcriptional regulator 0.41 53
Pseudomonas putida KT2440 0.48 PP_1362 pyruvate kinase II 0.51 PP_2457 DNA-binding transcriptional repressor low > 96
Pseudomonas fluorescens FW300-N2E3 0.47 AO353_03775 pyruvate kinase 0.50 AO353_20830 LacI family transcriptional regulator low > 101
Pseudomonas fluorescens FW300-N1B4 0.47 Pf1N1B4_678 Pyruvate kinase (EC 2.7.1.40) 0.50 Pf1N1B4_6032 Ribose operon repressor low > 87
Pseudomonas syringae pv. syringae B728a 0.47 Psyr_4029 pyruvate kinase 0.49 Psyr_2154 transcriptional regulator, LacI family low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.47 Psyr_4029 pyruvate kinase 0.49 Psyr_2154 transcriptional regulator, LacI family low > 86
Pseudomonas fluorescens FW300-N2C3 0.47 AO356_17830 pyruvate kinase 0.50 AO356_00955 LacI family transcriptional regulator low > 104
Pseudomonas fluorescens SBW25-INTG 0.47 PFLU_RS24255 pyruvate kinase 0.51 PFLU_RS20365 LacI family DNA-binding transcriptional regulator low > 109
Pseudomonas fluorescens SBW25 0.47 PFLU_RS24255 pyruvate kinase 0.51 PFLU_RS20365 LacI family DNA-binding transcriptional regulator low > 109
Pseudomonas simiae WCS417 0.47 PS417_22620 pyruvate kinase 0.51 PS417_18390 LacI family transcriptional regulator low > 88
Pseudomonas fluorescens FW300-N2E2 0.47 Pf6N2E2_5494 Pyruvate kinase (EC 2.7.1.40) 0.50 Pf6N2E2_164 Ribose operon repressor low > 103
Shewanella loihica PV-4 0.47 Shew_2050 pyruvate kinase (RefSeq) 0.19 Shew_1870 LacI family transcription regulator (RefSeq) — —
Pseudomonas fluorescens GW456-L13 0.47 PfGW456L13_1813 Pyruvate kinase (EC 2.7.1.40) 0.49 PfGW456L13_3909 Ribose operon repressor low > 87
Pseudomonas sp. RS175 0.46 PFR28_03455 Pyruvate kinase II 0.50 PFR28_02734 Ribose operon repressor low > 88
Vibrio cholerae E7946 ATCC 55056 0.46 CSW01_10025 pyruvate kinase 0.38 CSW01_08660 PurR family transcriptional regulator low > 62
Dickeya dianthicola 67-19 0.46 HGI48_RS10155 pyruvate kinase 0.36 HGI48_RS21310 ribose operon transcriptional repressor RbsR low > 71
Dickeya dadantii 3937 0.46 DDA3937_RS10125 pyruvate kinase 0.37 DDA3937_RS00055 ribose operon transcriptional repressor RbsR low > 74
Dickeya dianthicola ME23 0.46 DZA65_RS10570 pyruvate kinase 0.34 DZA65_RS13140 HTH-type transcriptional repressor PurR low > 75
Shewanella sp. ANA-3 0.46 Shewana3_2153 pyruvate kinase (RefSeq) 0.19 Shewana3_3122 LacI family transcription regulator (RefSeq) low > 73
Pectobacterium carotovorum WPP14 0.46 HER17_RS11790 pyruvate kinase 0.37 HER17_RS21525 ribose operon transcriptional repressor RbsR low > 75
Shewanella oneidensis MR-1 0.46 SO2491 pykA pyruvate kinase II (NCBI ptt file) 0.19 SO3516 transcriptional regulator, LacI family (NCBI ptt file) low > 76
Escherichia fergusonii Becca 0.45 EFB2_02088 Pyruvate kinase II 0.39 EFB2_04880 Ribose operon repressor low > 86
Shewanella amazonensis SB2B 0.45 Sama_1814 pyruvate kinase (RefSeq) 0.27 Sama_1400 periplasmic binding protein/LacI transcriptional regulator (RefSeq) low > 62
Escherichia coli ECOR38 0.45 HEPCGN_04725 pyk pyruvate kinase 0.39 HEPCGN_13435 rbsR ribose operon transcriptional repressor RbsR low > 87
Escherichia coli Nissle 1917 0.45 ECOLIN_RS10330 pyruvate kinase 0.38 ECOLIN_RS21575 ribose operon transcriptional repressor RbsR low > 55
Rahnella sp. WP5 0.45 EX31_RS10640 pyruvate kinase 0.37 EX31_RS06195 ribose operon transcriptional repressor RbsR low > 89
Escherichia coli ECRC62 0.45 BNILDI_15630 pyk pyruvate kinase 0.39 BNILDI_04665 rbsR ribose operon transcriptional repressor RbsR low > 75
Escherichia coli ECOR27 0.45 NOLOHH_16835 pyk pyruvate kinase 0.39 NOLOHH_06860 rbsR ribose operon transcriptional repressor RbsR low > 75
Escherichia coli BL21 0.45 ECD_01825 pyruvate kinase II 0.39 ECD_03639 transcriptional repressor of ribose metabolism low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.45 OHPLBJKB_01874 Pyruvate kinase II 0.32 OHPLBJKB_02066 HTH-type transcriptional repressor PurR low > 73
Escherichia coli BW25113 0.45 b1854 pykA pyruvate kinase (NCBI) 0.39 b3753 rbsR DNA-binding transcriptional repressor of ribose metabolism (NCBI) low > 76
Escherichia coli ECRC102 0.45 NIAGMN_01740 pyk pyruvate kinase 0.39 NIAGMN_12480 rbsR ribose operon transcriptional repressor RbsR — —
Rhodanobacter sp. FW510-T8 0.45 OKGIIK_01070 pyk pyruvate kinase 0.24 OKGIIK_15435 LacI family transcriptional regulator low > 52
Escherichia coli ECRC99 0.45 KEDOAH_01785 pyk pyruvate kinase 0.39 KEDOAH_13425 rbsR ribose operon transcriptional repressor RbsR — —
Escherichia coli ECRC101 0.45 MCAODC_19085 pyk pyruvate kinase 0.39 MCAODC_05230 rbsR ribose operon transcriptional repressor RbsR low > 87
Escherichia coli ECRC100 0.45 OKFHMN_26320 pyk pyruvate kinase 0.39 OKFHMN_14725 rbsR ribose operon transcriptional repressor RbsR low > 80
Rhodanobacter denitrificans FW104-10B01 0.45 LRK54_RS05775 pyruvate kinase 0.27 LRK54_RS08670 LacI family transcriptional regulator 0.62 11
Escherichia coli ECRC98 0.45 JDDGAC_00895 pyk pyruvate kinase 0.39 JDDGAC_18345 rbsR ribose operon transcriptional repressor RbsR low > 86
Rhodanobacter denitrificans MT42 0.45 LRK55_RS05530 pyruvate kinase 0.27 LRK55_RS08435 LacI family DNA-binding transcriptional regulator low > 63
Erwinia tracheiphila SCR3 0.45 LU632_RS13370 pyk pyruvate kinase 0.32 LU632_RS11190 purR HTH-type transcriptional repressor PurR low > 74
Pantoea sp. MT58 0.45 IAI47_08485 pyruvate kinase 0.38 IAI47_00375 ribose operon transcriptional repressor RbsR low > 76
Alteromonas macleodii MIT1002 0.45 MIT1002_02409 Pyruvate kinase II 0.26 MIT1002_00363 HTH-type transcriptional repressor CytR — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.45 GFF1633 Pyruvate kinase (EC 2.7.1.40) 0.37 GFF1704 Ribose operon repressor low > 78
Serratia liquefaciens MT49 0.45 IAI46_14585 pyruvate kinase 0.35 IAI46_25050 ribose operon transcriptional repressor RbsR low > 86
Enterobacter sp. TBS_079 0.44 MPMX20_02759 Pyruvate kinase II 0.37 MPMX20_04614 Ribose operon repressor low > 85
Enterobacter asburiae PDN3 0.44 EX28DRAFT_0702 pyruvate kinase 0.39 EX28DRAFT_4029 transcriptional regulator, LacI family low > 76
Klebsiella michiganensis M5al 0.44 BWI76_RS18115 pyruvate kinase 0.37 BWI76_RS00295 transcriptional regulator RbsR low > 92
Dyella japonica UNC79MFTsu3.2 0.42 ABZR86_RS18630 pyruvate kinase 0.28 ABZR86_RS01690 LacI family DNA-binding transcriptional regulator low > 74
Lysobacter sp. OAE881 0.40 ABIE51_RS17040 pyruvate kinase 0.26 ABIE51_RS08800 LacI family DNA-binding transcriptional regulator low > 62
Xanthomonas campestris pv. campestris strain 8004 0.40 Xcc-8004.1243.1 Pyruvate kinase (EC 2.7.1.40) 0.27 Xcc-8004.2177.1 Transcriptional regulator lacI family low > 74
Azospirillum sp. SherDot2 0.34 MPMX19_04074 Pyruvate kinase 0.29 MPMX19_02768 Ribose operon repressor low > 112
Sphingomonas koreensis DSMZ 15582 0.33 Ga0059261_0685 pyruvate kinase 0.27 Ga0059261_0555 transcriptional regulator, LacI family low > 68
Azospirillum brasilense Sp245 0.32 AZOBR_RS06845 pyruvate kinase 0.25 AZOBR_RS32320 LacI family transcriptional regulator low > 97
Bosea sp. OAE506 0.31 ABIE41_RS06285 pyruvate kinase 0.20 ABIE41_RS06440 LacI family DNA-binding transcriptional regulator low > 77
Mucilaginibacter yixingensis YX-36 DSM 26809 0.31 ABZR88_RS01590 pyruvate kinase 0.23 ABZR88_RS10530 LacI family DNA-binding transcriptional regulator — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.31 Echvi_2317 pyruvate kinase 0.27 Echvi_3495 Transcriptional regulators low > 79
Sinorhizobium meliloti 1021 0.31 SMc04005 pyruvate kinase 0.27 SM_b20674 LacI family transcriptional regulator low > 103
Rhodospirillum rubrum S1H 0.31 Rru_A2465 Pyruvate kinase (NCBI) 0.26 Rru_A1973 Transcriptional Regulator, LacI family (NCBI) — —
Pedobacter sp. GW460-11-11-14-LB5 0.30 CA265_RS18740 pyruvate kinase 0.21 CA265_RS24625 LacI family transcriptional regulator — —
Bifidobacterium breve UCC2003 0.30 BBR_RS14295 pyruvate kinase 0.20 BBR_RS19505 LacI family transcriptional regulator — —
Agrobacterium fabrum C58 0.30 Atu3762 pyruvate kinase 0.26 Atu4373 LacI family transcriptional regulator — —
Rhizobium sp. OAE497 0.29 ABIE40_RS16145 pyruvate kinase 0.25 ABIE40_RS26295 LacI family DNA-binding transcriptional regulator — —
Caulobacter crescentus NA1000 0.28 CCNA_02130 pyruvate kinase 0.26 CCNA_01699 LacI-family transcriptional regulator low > 66
Caulobacter crescentus NA1000 Δfur 0.28 CCNA_02130 pyruvate kinase 0.26 CCNA_01699 LacI-family transcriptional regulator low > 67
Brevundimonas sp. GW460-12-10-14-LB2 0.27 A4249_RS02440 pyruvate kinase 0.23 A4249_RS03600 LacI family DNA-binding transcriptional regulator — —
Phocaeicola vulgatus CL09T03C04 0.22 HMPREF1058_RS09670 pyruvate kinase 0.21 HMPREF1058_RS09530 LacI family DNA-binding transcriptional regulator — —
Phocaeicola dorei CL03T12C01 0.22 ABI39_RS07010 pyruvate kinase 0.21 ABI39_RS03985 LacI family DNA-binding transcriptional regulator low > 72
Bacteroides ovatus ATCC 8483 0.21 BACOVA_02121 pyruvate kinase 0.25 BACOVA_03133 sugar-binding domain protein — —
Bacteroides stercoris CC31F 0.21 HMPREF1181_RS01240 pyruvate kinase 0.20 HMPREF1181_RS05535 LacI family DNA-binding transcriptional regulator low > 56

Not shown: 19 genomes with orthologs for HSERO_RS03350 only; 0 genomes with orthologs for HSERO_RS11495 only