| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Herbaspirillum seropedicae SmR1 | 1.0 | HSERO_RS04220 | | epoxyqueuosine reductase | 1.0 | HSERO_RS09155 | | DNA topoisomerase IV subunit B | 0.32 | 12 |
| Paraburkholderia sabiae LMG 24235 | 0.65 | QEN71_RS02745 | | tRNA epoxyqueuosine(34) reductase QueG | 0.79 | QEN71_RS24700 | | DNA topoisomerase IV subunit B | — | — |
| Paraburkholderia graminis OAS925 | 0.64 | ABIE53_003363 | | epoxyqueuosine reductase | 0.79 | ABIE53_001392 | | topoisomerase-4 subunit B | — | — |
| Burkholderia phytofirmans PsJN | 0.63 | BPHYT_RS15960 | | iron-sulfur cluster binding protein | 0.79 | BPHYT_RS05930 | | DNA topoisomerase IV subunit B | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.63 | RR42_RS03405 | | epoxyqueuosine reductase | 0.80 | RR42_RS14675 | | DNA topoisomerase IV subunit B | — | — |
| Ralstonia solanacearum GMI1000 | 0.63 | RS_RS12740 | | tRNA epoxyqueuosine(34) reductase QueG | 0.82 | RS_RS04830 | | type IIA DNA topoisomerase subunit B | — | — |
| Ralstonia solanacearum PSI07 | 0.63 | RPSI07_RS12175 | | tRNA epoxyqueuosine(34) reductase QueG | 0.82 | RPSI07_RS19420 | | type IIA DNA topoisomerase subunit B | — | — |
| Ralstonia sp. UNC404CL21Col | 0.63 | ABZR87_RS00775 | | tRNA epoxyqueuosine(34) reductase QueG | 0.83 | ABZR87_RS09740 | | DNA topoisomerase IV subunit B | — | — |
| Ralstonia solanacearum UW163 | 0.62 | UW163_RS08505 | | tRNA epoxyqueuosine(34) reductase QueG | 0.82 | UW163_RS15765 | | type IIA DNA topoisomerase subunit B | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.62 | RALBFv3_RS05120 | | tRNA epoxyqueuosine(34) reductase QueG | 0.82 | RALBFv3_RS14045 | | type IIA DNA topoisomerase subunit B | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.62 | H281DRAFT_04128 | | epoxyqueuosine reductase | 0.79 | H281DRAFT_00264 | | DNA topoisomerase IV subunit B | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.61 | GFF5474 | | Epoxyqueuosine (oQ) reductase QueG | 0.72 | GFF5561 | | Topoisomerase IV subunit B (EC 5.99.1.-) | low | > 90 |
| Acidovorax sp. GW101-3H11 | 0.60 | Ac3H11_306 | | Epoxyqueuosine (oQ) reductase QueG | 0.74 | Ac3H11_273 | | Topoisomerase IV subunit B (EC 5.99.1.-) | — | — |
| Variovorax sp. OAS795 | 0.59 | ABID97_RS20285 | | tRNA epoxyqueuosine(34) reductase QueG | 0.73 | ABID97_RS20095 | | DNA topoisomerase IV subunit B | low | > 91 |
| Pseudomonas sp. S08-1 | 0.59 | OH686_09500 | | epoxyqueuosine reductase | 0.46 | OH686_15815 | | DNA topoisomerase IV, B subunit | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.59 | Psyr_0566 | | 4Fe-4S cluster binding protein | 0.45 | Psyr_0551 | | DNA topoisomerase IV subunit B | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.59 | Psyr_0566 | | 4Fe-4S cluster binding protein | 0.45 | Psyr_0551 | | DNA topoisomerase IV subunit B | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.58 | ABZR86_RS00835 | | tRNA epoxyqueuosine(34) reductase QueG | 0.48 | ABZR86_RS06650 | | DNA topoisomerase IV subunit B | — | — |
| Castellaniella sp019104865 MT123 | 0.58 | ABCV34_RS13905 | | tRNA epoxyqueuosine(34) reductase QueG | 0.73 | ABCV34_RS06175 | | DNA topoisomerase IV subunit B | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.57 | Pf1N1B4_1418 | | Epoxyqueuosine (oQ) reductase QueG | 0.45 | Pf1N1B4_1440 | | Topoisomerase IV subunit B (EC 5.99.1.-) | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.57 | AO353_13115 | | epoxyqueuosine reductase | 0.45 | AO353_13045 | | DNA topoisomerase IV | — | — |
| Pseudomonas fluorescens SBW25 | 0.57 | PFLU_RS02540 | | tRNA epoxyqueuosine(34) reductase QueG | 0.45 | PFLU_RS02465 | | DNA topoisomerase IV subunit B | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.57 | PFLU_RS02540 | | tRNA epoxyqueuosine(34) reductase QueG | 0.45 | PFLU_RS02465 | | DNA topoisomerase IV subunit B | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.57 | PfGW456L13_160 | | Epoxyqueuosine (oQ) reductase QueG | 0.45 | PfGW456L13_178 | | Topoisomerase IV subunit B (EC 5.99.1.-) | — | — |
| Pseudomonas sp. RS175 | 0.57 | PFR28_05115 | | Epoxyqueuosine reductase | 0.45 | PFR28_05100 | | DNA topoisomerase 4 subunit B | — | — |
| Pseudomonas simiae WCS417 | 0.57 | PS417_02460 | | epoxyqueuosine reductase | 0.46 | PS417_02390 | | DNA topoisomerase IV subunit B | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.57 | AO356_08685 | | epoxyqueuosine reductase | 0.45 | AO356_08765 | | DNA topoisomerase IV | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.56 | Pf6N2E2_3620 | | Epoxyqueuosine (oQ) reductase QueG | 0.45 | Pf6N2E2_3636 | | Topoisomerase IV subunit B (EC 5.99.1.-) | — | — |
| Rhodanobacter sp. FW510-T8 | 0.55 | OKGIIK_03900 | queG | tRNA epoxyqueuosine(34) reductase QueG | 0.47 | OKGIIK_05045 | parE | DNA topoisomerase IV subunit B | — | — |
| Serratia liquefaciens MT49 | 0.55 | IAI46_01595 | | tRNA epoxyqueuosine(34) reductase QueG | 0.47 | IAI46_21920 | | DNA topoisomerase IV subunit B | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.55 | LRK54_RS15130 | | tRNA epoxyqueuosine(34) reductase QueG | 0.47 | LRK54_RS01490 | | DNA topoisomerase IV subunit B | — | — |
| Escherichia coli ECRC99 | 0.55 | KEDOAH_15870 | queG | tRNA epoxyqueuosine(34) reductase QueG | 0.46 | KEDOAH_09315 | | DNA topoisomerase 4 subunit B | — | — |
| Escherichia coli ECRC102 | 0.55 | NIAGMN_10135 | queG | tRNA epoxyqueuosine(34) reductase QueG | 0.46 | NIAGMN_16595 | | DNA topoisomerase 4 subunit B | — | — |
| Pseudomonas stutzeri RCH2 | 0.55 | Psest_0677 | | iron-sulfur cluster binding protein, putative | 0.45 | Psest_0483 | | DNA topoisomerase IV, B subunit, proteobacterial | — | — |
| Rhodanobacter denitrificans MT42 | 0.55 | LRK55_RS14845 | | tRNA epoxyqueuosine(34) reductase QueG | 0.47 | LRK55_RS01295 | | DNA topoisomerase IV subunit B | — | — |
| Escherichia coli ECOR38 | 0.55 | HEPCGN_10515 | queG | tRNA epoxyqueuosine(34) reductase QueG | 0.46 | HEPCGN_17705 | | DNA topoisomerase 4 subunit B | — | — |
| Escherichia coli ECRC98 | 0.55 | JDDGAC_15925 | queG | tRNA epoxyqueuosine(34) reductase QueG | 0.46 | JDDGAC_22465 | | DNA topoisomerase 4 subunit B | — | — |
| Escherichia coli ECRC100 | 0.55 | OKFHMN_12285 | queG | tRNA epoxyqueuosine(34) reductase QueG | 0.46 | OKFHMN_18830 | | DNA topoisomerase 4 subunit B | — | — |
| Variovorax sp. SCN45 | 0.55 | GFF4805 | | Epoxyqueuosine reductase (EC 1.17.99.6) QueG | 0.74 | GFF2734 | | DNA topoisomerase IV subunit B (EC 5.99.1.3) | low | > 127 |
| Escherichia coli BL21 | 0.55 | ECD_04033 | | epoxyqueuosine reductase, cobalamine-stimulated; queosine biosynthesis | 0.46 | ECD_02902 | | DNA topoisomerase IV, subunit B | — | — |
| Escherichia coli ECRC62 | 0.55 | BNILDI_06940 | queG | tRNA epoxyqueuosine(34) reductase QueG | 0.46 | BNILDI_00880 | | DNA topoisomerase 4 subunit B | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.55 | OHPLBJKB_03876 | | Epoxyqueuosine reductase | 0.46 | OHPLBJKB_00673 | | DNA topoisomerase 4 subunit B | — | — |
| Escherichia coli ECOR27 | 0.55 | NOLOHH_04550 | queG | tRNA epoxyqueuosine(34) reductase QueG | 0.46 | NOLOHH_10635 | | DNA topoisomerase 4 subunit B | — | — |
| Escherichia coli ECRC101 | 0.55 | MCAODC_02800 | queG | tRNA epoxyqueuosine(34) reductase QueG | 0.46 | MCAODC_09345 | | DNA topoisomerase 4 subunit B | — | — |
| Escherichia coli BW25113 | 0.55 | b4166 | yjeS | predicted Fe-S electron transport protein (NCBI) | 0.46 | b3030 | parE | DNA topoisomerase IV subunit B (NCBI) | — | — |
| Escherichia coli Nissle 1917 | 0.55 | ECOLIN_RS24200 | | tRNA epoxyqueuosine(34) reductase QueG | 0.46 | ECOLIN_RS17490 | | DNA topoisomerase IV subunit B | — | — |
| Dickeya dianthicola 67-19 | 0.55 | HGI48_RS18575 | | tRNA epoxyqueuosine(34) reductase QueG | 0.47 | HGI48_RS01660 | | DNA topoisomerase IV subunit B | — | — |
| Escherichia fergusonii Becca | 0.55 | EFB2_04369 | | Epoxyqueuosine reductase | 0.46 | EFB2_00778 | | DNA topoisomerase 4 subunit B | — | — |
| Dickeya dadantii 3937 | 0.55 | DDA3937_RS18645 | | tRNA epoxyqueuosine(34) reductase QueG | 0.47 | DDA3937_RS01765 | | DNA topoisomerase IV subunit B | — | — |
| Dickeya dianthicola ME23 | 0.55 | DZA65_RS19710 | | tRNA epoxyqueuosine(34) reductase QueG | 0.47 | DZA65_RS01735 | | DNA topoisomerase IV subunit B | — | — |
| Pseudomonas putida KT2440 | 0.55 | PP_4900 | | epoxyqueuosine reductase | 0.45 | PP_4915 | | DNA topoisomerase IV subunit B | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.54 | GFF819 | | Epoxyqueuosine (oQ) reductase QueG | 0.47 | GFF3144 | | Topoisomerase IV subunit B (EC 5.99.1.-) | — | — |
| Klebsiella michiganensis M5al | 0.54 | BWI76_RS02505 | | tRNA epoxyqueuosine(34) reductase QueG | 0.46 | BWI76_RS24375 | | DNA topoisomerase IV subunit B | — | — |
| Marinobacter adhaerens HP15 | 0.54 | HP15_2505 | | iron-sulfur cluster binding protein | 0.48 | HP15_2527 | | DNA topoisomerase IV, subunit B | — | — |
| Pectobacterium carotovorum WPP14 | 0.54 | HER17_RS02555 | | tRNA epoxyqueuosine(34) reductase QueG | 0.47 | HER17_RS19800 | | DNA topoisomerase IV subunit B | — | — |
| Shewanella oneidensis MR-1 | 0.54 | SO3861 | | iron-sulfur cluster-binding protein (NCBI ptt file) | 0.45 | SO3899 | parE | DNA topoisomerase IV, B subunit (NCBI ptt file) | — | — |
| Enterobacter sp. TBS_079 | 0.53 | MPMX20_00447 | | Epoxyqueuosine reductase | 0.46 | MPMX20_03877 | | DNA topoisomerase 4 subunit B | — | — |
| Enterobacter asburiae PDN3 | 0.53 | EX28DRAFT_3363 | | epoxyqueuosine reductase | 0.47 | EX28DRAFT_3068 | | DNA topoisomerase IV, B subunit, proteobacterial | — | — |
| Shewanella sp. ANA-3 | 0.53 | Shewana3_0745 | | putative iron-sulfur cluster binding protein (RefSeq) | 0.46 | Shewana3_0730 | | DNA topoisomerase IV subunit B (RefSeq) | — | — |
| Lysobacter sp. OAE881 | 0.53 | ABIE51_RS08045 | | tRNA epoxyqueuosine(34) reductase QueG | 0.47 | ABIE51_RS06425 | | DNA topoisomerase IV subunit B | — | — |
| Alteromonas macleodii MIT1002 | 0.53 | MIT1002_03794 | | Epoxyqueuosine reductase | 0.47 | MIT1002_00675 | | DNA topoisomerase 4 subunit B | — | — |
| Shewanella loihica PV-4 | 0.53 | Shew_2979 | | putative iron-sulfur cluster binding protein (RefSeq) | 0.45 | Shew_0549 | | DNA topoisomerase IV subunit B (RefSeq) | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.52 | Xcc-8004.2252.1 | | Epoxyqueuosine (oQ) reductase QueG | 0.46 | Xcc-8004.3148.1 | | Topoisomerase IV subunit B (EC 5.99.1.-) | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.52 | CSW01_01810 | | tRNA epoxyqueuosine(34) reductase QueG | 0.47 | CSW01_12310 | | DNA topoisomerase IV subunit B | — | — |
| Pantoea sp. MT58 | 0.52 | IAI47_02560 | | tRNA epoxyqueuosine(34) reductase QueG | 0.48 | IAI47_03160 | | DNA topoisomerase IV subunit B | — | — |
| Rahnella sp. WP5 | 0.52 | EX31_RS08850 | | tRNA epoxyqueuosine(34) reductase QueG | 0.47 | EX31_RS08075 | | DNA topoisomerase IV subunit B | — | — |
| Shewanella amazonensis SB2B | 0.50 | Sama_2625 | | iron-sulfur cluster-binding protein (RefSeq) | 0.45 | Sama_3043 | | DNA topoisomerase IV subunit B (RefSeq) | — | — |
| Dechlorosoma suillum PS | 0.50 | Dsui_3502 | | iron-sulfur cluster binding protein, putative | 0.72 | Dsui_2786 | | type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit | — | — |
| Acinetobacter radioresistens SK82 | 0.48 | MPMX26_01783 | | Epoxyqueuosine reductase | 0.44 | MPMX26_02946 | | DNA topoisomerase 4 subunit B | — | — |
| Kangiella aquimarina DSM 16071 | 0.45 | B158DRAFT_0486 | | iron-sulfur cluster binding protein, putative | 0.46 | B158DRAFT_0978 | | DNA topoisomerase IV, B subunit, proteobacterial | — | — |
| Rhodospirillum rubrum S1H | 0.33 | Rru_A0279 | | 4Fe-4S ferredoxin, iron-sulfur binding (NCBI) | 0.31 | Rru_A2710 | | Gram negative topoisomerase IV, subunit B (NCBI) | — | — |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.32 | A4249_RS11375 | | tRNA epoxyqueuosine(34) reductase QueG | 0.31 | A4249_RS05575 | | DNA topoisomerase IV subunit B | — | — |
| Caulobacter crescentus NA1000 Δfur | 0.32 | CCNA_03753 | | iron-sulfur cluster-binding protein | 0.32 | CCNA_02052 | | topoisomerase IV subunit B | — | — |
| Caulobacter crescentus NA1000 | 0.32 | CCNA_03753 | | iron-sulfur cluster-binding protein | 0.32 | CCNA_02052 | | topoisomerase IV subunit B | — | — |
| Phaeobacter inhibens DSM 17395 | 0.31 | PGA1_c34310 | | Uncharacterized Fe-S protein | 0.29 | PGA1_c21350 | | DNA topoisomerase 4 subunit B | — | — |
| Dinoroseobacter shibae DFL-12 | 0.30 | Dshi_3307 | | domain of unknown function DUF1730 (RefSeq) | 0.28 | Dshi_0749 | | DNA topoisomerase IV, B subunit (RefSeq) | — | — |
| Magnetospirillum magneticum AMB-1 | 0.30 | AMB_RS03995 | | tRNA epoxyqueuosine(34) reductase QueG | 0.29 | AMB_RS16950 | | DNA topoisomerase IV subunit B | — | — |
Not shown: 12 genomes with orthologs for HSERO_RS04220 only; 1 genomes with orthologs for HSERO_RS09155 only