Conservation of cofitness between HER17_RS08615 and HER17_RS14880 in Pectobacterium carotovorum WPP14

78 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS08615 23S rRNA pseudouridine(955/2504/2580) synthase RluC 1.0 HER17_RS14880 Tol-Pal system protein TolQ 0.80 11
Rahnella sp. WP5 0.85 EX31_RS24400 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.91 EX31_RS23480 Tol-Pal system protein TolQ low > 89
Dickeya dianthicola ME23 0.84 DZA65_RS13690 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.92 DZA65_RS06895 Tol-Pal system protein TolQ low > 75
Dickeya dianthicola 67-19 0.84 HGI48_RS13220 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.92 HGI48_RS06545 Tol-Pal system protein TolQ low > 71
Dickeya dadantii 3937 0.84 DDA3937_RS13155 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.93 DDA3937_RS06500 Tol-Pal system protein TolQ — —
Serratia liquefaciens MT49 0.83 IAI46_09755 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.94 IAI46_06320 Tol-Pal system protein TolQ — —
Klebsiella michiganensis M5al 0.83 BWI76_RS11050 23S rRNA pseudouridine(955/2504/2580) synthase 0.91 BWI76_RS08520 colicin transporter TolQ low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.83 GFF3366 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.86 GFF4651 MotA/TolQ/ExbB proton channel family protein — —
Enterobacter asburiae PDN3 0.82 EX28DRAFT_1844 pseudouridine synthase, RluA family 0.91 EX28DRAFT_2254 TolQ protein — —
Pantoea sp. MT58 0.82 IAI47_12105 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.90 IAI47_13700 Tol-Pal system protein TolQ low > 76
Escherichia coli BW25113 0.82 b1086 rluC 23S rRNA pseudouridylate synthase (NCBI) 0.86 b0737 tolQ membrane spanning protein in TolA-TolQ-TolR complex (NCBI) low > 76
Escherichia coli BL21 0.82 ECD_01082 23S rRNA pseudouridine(955,2504,2580) synthase 0.86 ECD_00697 membrane spanning protein in TolA-TolQ-TolR complex — —
Escherichia coli ECRC98 0.82 JDDGAC_07275 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.86 JDDGAC_10475 tolQ Tol-Pal system protein TolQ low > 86
Escherichia coli ECRC99 0.82 KEDOAH_24140 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.86 KEDOAH_21145 tolQ Tol-Pal system protein TolQ — —
Escherichia coli ECRC62 0.82 BNILDI_19305 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.86 BNILDI_21250 tolQ Tol-Pal system protein TolQ low > 75
Escherichia fergusonii Becca 0.82 EFB2_02889 Ribosomal large subunit pseudouridine synthase C 0.86 EFB2_03369 Tol-Pal system protein TolQ low > 86
Escherichia coli ECRC102 0.82 NIAGMN_24215 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.86 NIAGMN_04870 tolQ Tol-Pal system protein TolQ — —
Escherichia coli ECRC101 0.82 MCAODC_22975 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.86 MCAODC_26040 tolQ Tol-Pal system protein TolQ low > 87
Escherichia coli ECRC100 0.82 OKFHMN_03615 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.86 OKFHMN_06820 tolQ Tol-Pal system protein TolQ — —
Escherichia coli ECOR27 0.82 NOLOHH_21145 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.86 NOLOHH_23255 tolQ Tol-Pal system protein TolQ — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.82 OHPLBJKB_02580 Ribosomal large subunit pseudouridine synthase C 0.86 OHPLBJKB_02976 Protein TolQ low > 73
Escherichia coli ECOR38 0.82 HEPCGN_23865 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.86 HEPCGN_01450 tolQ Tol-Pal system protein TolQ low > 87
Escherichia coli Nissle 1917 0.81 ECOLIN_RS06280 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.86 ECOLIN_RS03925 Tol-Pal system protein TolQ low > 55
Enterobacter sp. TBS_079 0.80 MPMX20_01766 Ribosomal large subunit pseudouridine synthase C 0.91 MPMX20_01366 Tol-Pal system protein TolQ low > 85
Erwinia tracheiphila SCR3 0.79 LU632_RS14855 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.91 LU632_RS16045 tolQ Tol-Pal system protein TolQ — —
Shewanella loihica PV-4 0.64 Shew_1594 RluA family pseudouridine synthase (RefSeq) 0.64 Shew_1524 MotA/TolQ/ExbB proton channel (RefSeq) low > 60
Shewanella sp. ANA-3 0.64 Shewana3_2566 ribosomal large subunit pseudouridine synthase C (RefSeq) 0.63 Shewana3_2534 MotA/TolQ/ExbB proton channel (RefSeq) — —
Vibrio cholerae E7946 ATCC 55056 0.63 CSW01_10130 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.67 CSW01_09210 protein TolQ — —
Shewanella amazonensis SB2B 0.62 Sama_1988 pseudouridylate synthase (RefSeq) 0.54 Sama_2089 MotA/TolQ/ExbB proton channel (RefSeq) — —
Alteromonas macleodii MIT1002 0.61 MIT1002_01725 Ribosomal large subunit pseudouridine synthase C 0.57 MIT1002_01335 Biopolymer transport protein ExbB — —
Pseudomonas stutzeri RCH2 0.57 Psest_1680 pseudouridine synthase, RluA family 0.54 Psest_1499 TolQ protein — —
Pseudomonas fluorescens FW300-N2E2 0.57 Pf6N2E2_5944 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.54 Pf6N2E2_5539 MotA/TolQ/ExbB proton channel family protein — —
Pseudomonas sp. RS175 0.56 PFR28_03018 Ribosomal large subunit pseudouridine synthase C 0.54 PFR28_03410 Tol-Pal system protein TolQ — —
Pseudomonas fluorescens FW300-N2C3 0.56 AO356_20125 23S rRNA pseudouridylate synthase 0.54 AO356_18035 protein TolQ — —
Pseudomonas syringae pv. syringae B728a 0.56 Psyr_1639 ribosomal large subunit pseudouridine synthase C 0.54 Psyr_1412 Cell division and transport-associated protein TolQ — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.56 Psyr_1639 ribosomal large subunit pseudouridine synthase C 0.54 Psyr_1412 Cell division and transport-associated protein TolQ — —
Pseudomonas sp. S08-1 0.56 OH686_22095 LSU rRNA pseudouridine(955/2504/2580) synthase 0.55 OH686_19145 protein TolQ — —
Pseudomonas putida KT2440 0.55 PP_1906 ribosomal large subunit pseudouridine synthase C 0.53 PP_1219 subunit of a proton-driven complex used for maintenance of outer membrane stability — —
Pseudomonas simiae WCS417 0.55 PS417_21480 23S rRNA pseudouridylate synthase 0.54 PS417_22435 protein tolQ — —
Pseudomonas fluorescens SBW25 0.55 PFLU_RS23095 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.54 PFLU_RS24075 protein TolQ — —
Kangiella aquimarina DSM 16071 0.55 B158DRAFT_1770 ribosomal large subunit pseudouridine synthase C (EC 5.4.99.24) 0.59 B158DRAFT_1138 Cell division and transport-associated protein TolQ (TC 2.C.1.2.1) — —
Pseudomonas fluorescens SBW25-INTG 0.55 PFLU_RS23095 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.54 PFLU_RS24075 protein TolQ — —
Pseudomonas fluorescens FW300-N2E3 0.54 AO353_01405 23S rRNA pseudouridylate synthase 0.55 AO353_03570 protein TolQ — —
Pseudomonas fluorescens FW300-N1B4 0.53 Pf1N1B4_459 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.55 Pf1N1B4_635 MotA/TolQ/ExbB proton channel family protein — —
Pseudomonas fluorescens GW456-L13 0.53 PfGW456L13_2097 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.55 PfGW456L13_1855 MotA/TolQ/ExbB proton channel family protein — —
Marinobacter adhaerens HP15 0.49 HP15_2221 pseudouridine synthase, RluA family 0.48 HP15_2038 MotA/TolQ/ExbB proton channel — —
Herbaspirillum seropedicae SmR1 0.47 HSERO_RS09415 ribosomal large subunit pseudouridine synthase C 0.42 HSERO_RS06125 protein tolQ — —
Paraburkholderia sabiae LMG 24235 0.47 QEN71_RS04500 RluA family pseudouridine synthase 0.43 QEN71_RS26250 protein TolQ — —
Dechlorosoma suillum PS 0.46 Dsui_2437 pseudouridine synthase, RluA family 0.47 Dsui_0482 TolQ protein — —
Ralstonia solanacearum UW163 0.46 UW163_RS11840 RluA family pseudouridine synthase 0.47 UW163_RS00655 protein TolQ — —
Ralstonia solanacearum IBSBF1503 0.46 RALBFv3_RS14375 RluA family pseudouridine synthase 0.47 RALBFv3_RS12910 protein TolQ low > 76
Paraburkholderia graminis OAS925 0.46 ABIE53_003058 23S rRNA pseudouridine955/2504/2580 synthase 0.43 ABIE53_000885 biopolymer transport protein TolQ low > 113
Cupriavidus basilensis FW507-4G11 0.46 RR42_RS14155 pseudouridine synthase 0.43 RR42_RS15475 protein tolQ low > 128
Burkholderia phytofirmans PsJN 0.46 BPHYT_RS14480 ribosomal large subunit pseudouridine synthase C 0.42 BPHYT_RS03710 protein tolQ — —
Ralstonia solanacearum GMI1000 0.45 RS_RS05155 RluA family pseudouridine synthase 0.44 RS_RS03685 protein TolQ low > 80
Ralstonia sp. UNC404CL21Col 0.45 ABZR87_RS10090 RluA family pseudouridine synthase 0.47 ABZR87_RS08970 protein TolQ low > 80
Rhodanobacter denitrificans MT42 0.45 LRK55_RS17750 RluA family pseudouridine synthase 0.45 LRK55_RS04670 protein TolQ — —
Rhodanobacter denitrificans FW104-10B01 0.45 LRK54_RS17895 RluA family pseudouridine synthase 0.45 LRK54_RS04890 protein TolQ — —
Ralstonia solanacearum PSI07 0.45 RPSI07_RS19085 RluA family pseudouridine synthase 0.47 RPSI07_RS20315 protein TolQ low > 81
Variovorax sp. SCN45 0.45 GFF3847 LSU rRNA pseudouridine(955/2504/2580) synthase (EC 5.4.99.24) 0.42 GFF575 Tol-Pal system protein TolQ low > 127
Paraburkholderia bryophila 376MFSha3.1 0.45 H281DRAFT_04340 23S rRNA pseudouridine955/2504/2580 synthase 0.43 H281DRAFT_04722 Cell division and transport-associated protein TolQ low > 103
Rhodanobacter sp. FW510-T8 0.45 OKGIIK_07405 rluA 23S rRNA pseudouridine(955/2504/2580) synthase 0.46 OKGIIK_01860 tolQ protein TolQ — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.44 GFF121 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.40 GFF5173 MotA/TolQ/ExbB proton channel family protein low > 90
Variovorax sp. OAS795 0.44 ABID97_RS08250 RluA family pseudouridine synthase 0.40 ABID97_RS17970 protein TolQ low > 91
Acinetobacter radioresistens SK82 0.44 MPMX26_00317 Ribosomal large subunit pseudouridine synthase C 0.41 MPMX26_02191 Tol-Pal system protein TolQ low > 36
Acidovorax sp. GW101-3H11 0.42 Ac3H11_1590 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.40 Ac3H11_3137 MotA/TolQ/ExbB proton channel family protein — —
Dyella japonica UNC79MFTsu3.2 0.42 ABZR86_RS02725 RluA family pseudouridine synthase 0.49 ABZR86_RS10820 protein TolQ — —
Castellaniella sp019104865 MT123 0.42 ABCV34_RS08415 RluA family pseudouridine synthase 0.44 ABCV34_RS09835 protein TolQ — —
Lysobacter sp. OAE881 0.41 ABIE51_RS11800 RluA family pseudouridine synthase 0.51 ABIE51_RS05065 protein TolQ — —
Xanthomonas campestris pv. campestris strain 8004 0.40 Xcc-8004.2616.1 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.43 Xcc-8004.1441.1 MotA/TolQ/ExbB proton channel family protein — —
Agrobacterium fabrum C58 0.28 Atu1471 ribosomal large subunit pseudouridine synthase C 0.36 Atu3717 tolQ protein — —
Rhizobium sp. OAE497 0.28 ABIE40_RS09915 RluA family pseudouridine synthase 0.38 ABIE40_RS15615 protein TolQ — —
Phaeobacter inhibens DSM 17395 0.27 PGA1_c01950 ribosomal large subunit pseudouridine synthase C 0.37 PGA1_c05900 protein TolQ — —
Magnetospirillum magneticum AMB-1 0.26 AMB_RS15620 RluA family pseudouridine synthase 0.37 AMB_RS16235 protein TolQ — —
Sinorhizobium meliloti 1021 0.26 SMc01275 ribosomal large subunit pseudouridine synthase C protein 0.39 SMc03958 transport transmembrane protein — —
Azospirillum sp. SherDot2 0.24 MPMX19_01718 Ribosomal large subunit pseudouridine synthase C 0.37 MPMX19_00700 Tol-Pal system protein TolQ — —
Azospirillum brasilense Sp245 0.24 AZOBR_RS06905 pseudouridine synthase 0.36 AZOBR_RS09060 biopolymer transporter ExbB — —
Dinoroseobacter shibae DFL-12 0.23 Dshi_0315 pseudouridine synthase, RluA family (RefSeq) 0.30 Dshi_1108 Tol-Pal system TolQ (RefSeq) — —
Sphingomonas koreensis DSMZ 15582 0.21 Ga0059261_1033 pseudouridine synthase, RluA family 0.32 Ga0059261_3160 TolQ protein — —

Not shown: 4 genomes with orthologs for HER17_RS08615 only; 13 genomes with orthologs for HER17_RS14880 only