Conservation of cofitness between GFF403 and GFF765 in Sphingobium sp. HT1-2

75 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Sphingobium sp. HT1-2 1.0 GFF403 Aspartate aminotransferase (EC 2.6.1.1) 1.0 GFF765 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) 0.89 3
Sphingomonas koreensis DSMZ 15582 0.73 Ga0059261_2226 Aspartate/tyrosine/aromatic aminotransferase 0.82 Ga0059261_1800 Glutamate synthase domain 2 low > 68
Caulobacter crescentus NA1000 0.62 CCNA_01603 aspartate aminotransferase 0.60 CCNA_03722 glutamate synthase (NADPH) large chain GltB 0.79 64
Caulobacter crescentus NA1000 Δfur 0.62 CCNA_01603 aspartate aminotransferase 0.60 CCNA_03722 glutamate synthase (NADPH) large chain GltB low > 67
Azospirillum sp. SherDot2 0.62 MPMX19_02392 Aspartate/prephenate aminotransferase 0.64 MPMX19_02657 Glutamate synthase [NADPH] large chain 0.80 63
Xanthobacter sp. DMC5 0.60 GFF4663 Aspartate/prephenate aminotransferase 0.40 GFF2524 Ferredoxin-dependent glutamate synthase 1 — —
Brevundimonas sp. GW460-12-10-14-LB2 0.59 A4249_RS04680 pyridoxal phosphate-dependent aminotransferase 0.51 A4249_RS16105 glutamate synthase large subunit — —
Dinoroseobacter shibae DFL-12 0.59 Dshi_0762 aminotransferase class I and II (RefSeq) 0.61 Dshi_0002 Glutamate synthase (ferredoxin) (RefSeq) — —
Rhodospirillum rubrum S1H 0.59 Rru_A1135 Aminotransferase, class I and II (NCBI) 0.64 Rru_A0019 Glutamate synthase (ferredoxin) (NCBI) — —
Phaeobacter inhibens DSM 17395 0.58 PGA1_c21250 aspartate aminotransferase AatA 0.61 PGA1_c36100 glutamate synthase [NADPH] large chain low > 62
Rhodopseudomonas palustris CGA009 0.58 TX73_022440 pyridoxal phosphate-dependent aminotransferase 0.40 TX73_004590 glutamate synthase large subunit — —
Rhizobium sp. OAE497 0.57 ABIE40_RS12925 pyridoxal phosphate-dependent aminotransferase 0.40 ABIE40_RS16275 glutamate synthase large subunit — —
Sinorhizobium meliloti 1021 0.57 SMc01578 aspartate aminotransferase 0.39 SMc04028 glutamate synthase 0.75 3
Bosea sp. OAE506 0.56 ABIE41_RS11765 pyridoxal phosphate-dependent aminotransferase 0.40 ABIE41_RS08565 glutamate synthase large subunit — —
Agrobacterium fabrum C58 0.56 Atu2196 aspartate aminotransferase A 0.40 Atu3784 glutamate synthase large subunit — —
Magnetospirillum magneticum AMB-1 0.53 AMB_RS02875 pyridoxal phosphate-dependent aminotransferase 0.63 AMB_RS02685 glutamate synthase large subunit — —
Pseudomonas fluorescens SBW25 0.53 PFLU_RS15480 pyridoxal phosphate-dependent aminotransferase 0.39 PFLU_RS02045 glutamate synthase large subunit low > 109
Pseudomonas fluorescens SBW25-INTG 0.53 PFLU_RS15480 pyridoxal phosphate-dependent aminotransferase 0.39 PFLU_RS02045 glutamate synthase large subunit low > 109
Pseudomonas fluorescens FW300-N1B4 0.52 Pf1N1B4_5070 Aspartate aminotransferase (EC 2.6.1.1) 0.39 Pf1N1B4_1534 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) low > 87
Pseudomonas fluorescens FW300-N2C3 0.52 AO356_25355 aspartate aminotransferase 0.40 AO356_09375 glutamate synthase low > 104
Ralstonia solanacearum GMI1000 0.52 RS_RS23085 pyridoxal phosphate-dependent aminotransferase 0.39 RS_RS14860 glutamate synthase subunit alpha low > 80
Variovorax sp. SCN45 0.51 GFF5025 Aspartate aminotransferase (EC 2.6.1.1) 0.39 GFF5332 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) low > 127
Acidovorax sp. GW101-3H11 0.51 Ac3H11_1602 Aspartate aminotransferase (EC 2.6.1.1) 0.39 Ac3H11_4710 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) low > 79
Ralstonia solanacearum PSI07 0.51 RPSI07_RS05665 pyridoxal phosphate-dependent aminotransferase 0.39 RPSI07_RS10320 glutamate synthase subunit alpha low > 81
Cupriavidus basilensis FW507-4G11 0.50 RR42_RS35305 aspartate aminotransferase 0.40 RR42_RS18990 glutamate synthase low > 128
Variovorax sp. OAS795 0.50 ABID97_RS04080 pyridoxal phosphate-dependent aminotransferase 0.40 ABID97_RS23225 glutamate synthase-related protein low > 91
Pseudomonas sp. BP01 0.50 JOY50_RS13660 pyridoxal phosphate-dependent aminotransferase 0.40 JOY50_RS09320 gltB glutamate synthase large subunit low > 84
Ralstonia solanacearum UW163 0.49 UW163_RS21205 pyridoxal phosphate-dependent aminotransferase 0.39 UW163_RS06700 glutamate synthase subunit alpha — —
Ralstonia solanacearum IBSBF1503 0.49 RALBFv3_RS17935 pyridoxal phosphate-dependent aminotransferase 0.39 RALBFv3_RS06915 glutamate synthase subunit alpha low > 76
Rahnella sp. WP5 0.48 EX31_RS17525 pyridoxal phosphate-dependent aminotransferase 0.40 EX31_RS12515 glutamate synthase large subunit low > 89
Acinetobacter baumannii LAC-4 0.48 RR41_RS04925 pyridoxal phosphate-dependent aminotransferase 0.38 RR41_RS01595 glutamate synthase large subunit low > 55
Pseudomonas simiae WCS417 0.48 PS417_19025 aspartate aminotransferase 0.40 PS417_02000 glutamate synthase low > 88
Bacteroides thetaiotaomicron VPI-5482 0.47 BT2415 aspartate aminotransferase (NCBI ptt file) 0.38 BT0553 glutamate synthase, large subunit (NCBI ptt file) low > 81
Phocaeicola vulgatus CL09T03C04 0.47 HMPREF1058_RS00785 pyridoxal phosphate-dependent aminotransferase 0.39 HMPREF1058_RS06920 glutamate synthase large subunit — —
Parabacteroides merdae CL09T00C40 0.47 HMPREF1078_RS12080 pyridoxal phosphate-dependent aminotransferase 0.38 HMPREF1078_RS01270 glutamate synthase large subunit low > 61
Phocaeicola dorei CL03T12C01 0.47 ABI39_RS00770 pyridoxal phosphate-dependent aminotransferase 0.39 ABI39_RS20685 glutamate synthase large subunit low > 72
Dickeya dianthicola ME23 0.47 DZA65_RS19800 pyridoxal phosphate-dependent aminotransferase 0.40 DZA65_RS01635 glutamate synthase large subunit low > 75
Bacteroides stercoris CC31F 0.47 HMPREF1181_RS03765 pyridoxal phosphate-dependent aminotransferase 0.38 HMPREF1181_RS16055 glutamate synthase large subunit low > 56
Dickeya dianthicola 67-19 0.47 HGI48_RS18665 pyridoxal phosphate-dependent aminotransferase 0.40 HGI48_RS01560 glutamate synthase large subunit low > 71
Acinetobacter radioresistens SK82 0.46 MPMX26_02146 Aspartate/prephenate aminotransferase 0.38 MPMX26_02808 Glutamate synthase [NADPH] large chain low > 36
Methylophilus sp. DMC18 0.46 GFF1121 Aspartate/prephenate aminotransferase 0.40 GFF2799 Ferredoxin-dependent glutamate synthase 1 — —
Klebsiella michiganensis M5al 0.46 BWI76_RS10245 aspartate aminotransferase 0.39 BWI76_RS25315 glutamate synthase large subunit low > 92
Bacteroides ovatus ATCC 8483 0.46 BACOVA_03005 aminotransferase, class I/II 0.39 BACOVA_03756 class II glutamine amidotransferase low > 96
Marinobacter adhaerens HP15 0.46 HP15_1371 aspartate aminotransferase 0.39 HP15_482 glutamate synthase subunit alpha — —
Dickeya dadantii 3937 0.46 DDA3937_RS08230 pyridoxal phosphate-dependent aminotransferase 0.40 DDA3937_RS01665 glutamate synthase large subunit low > 74
Cellulophaga baltica 18 0.45 M666_RS08600 pyridoxal phosphate-dependent aminotransferase 0.41 M666_RS01740 glutamate synthase large subunit low > 67
Pseudomonas lactucae CFBP13502 0.45 GEMAOFIL_01711 Aspartate/prephenate aminotransferase 0.39 GEMAOFIL_00632 Glutamate synthase [NADPH] large chain low > 93
Pseudomonas fluorescens FW300-N2E2 0.42 Pf6N2E2_1496 Aspartate aminotransferase (EC 2.6.1.1) 0.40 Pf6N2E2_3752 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) low > 103
Synechococcus elongatus PCC 7942 0.42 Synpcc7942_2545 aspC aspartate aminotransferase 0.40 Synpcc7942_0890 glsF glutamate synthase (ferredoxin) — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.40 ABZR88_RS15900 pyridoxal phosphate-dependent aminotransferase 0.42 ABZR88_RS06905 glutamate synthase large subunit 0.87 4
Synechocystis sp000284455 PCC 6803 0.38 SGL_RS13785 pyridoxal phosphate-dependent aminotransferase 0.40 SGL_RS17380 glutamate synthase large subunit — —
Pedobacter sp. GW460-11-11-14-LB5 0.38 CA265_RS07515 pyridoxal phosphate-dependent aminotransferase 0.41 CA265_RS08700 glutamate synthase large subunit 0.61 61
Echinicola vietnamensis KMM 6221, DSM 17526 0.38 Echvi_0675 Aspartate/tyrosine/aromatic aminotransferase 0.39 Echvi_1244 Glutamate synthase domain 2 — —
Bifidobacterium breve UCC2003 0.33 BBR_RS19435 pyridoxal phosphate-dependent aminotransferase 0.37 BBR_RS15255 glutamate synthase large subunit low > 34
Rhodanobacter denitrificans FW104-10B01 0.31 LRK54_RS00725 pyridoxal phosphate-dependent aminotransferase 0.38 LRK54_RS10960 glutamate synthase large subunit low > 59
Rhodanobacter denitrificans MT42 0.31 LRK55_RS00500 pyridoxal phosphate-dependent aminotransferase 0.38 LRK55_RS10665 glutamate synthase large subunit low > 63
Rhodanobacter sp. FW510-T8 0.31 OKGIIK_06525 aspB aminotransferase 0.39 OKGIIK_15200 Glutamate synthase subunit alpha low > 53
Dyella japonica UNC79MFTsu3.2 0.30 ABZR86_RS08550 pyridoxal phosphate-dependent aminotransferase 0.37 ABZR86_RS16795 glutamate synthase large subunit low > 74
Rhodanobacter sp000427505 FW510-R12 0.29 LRK53_RS09430 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme 0.38 LRK53_RS00070 glutamate synthase-related protein low > 59
Pseudomonas sp. RS175 0.22 PFR28_02468 Arginine--pyruvate transaminase AruH 0.39 PFR28_05015 Glutamate synthase [NADPH] large chain low > 88
Pseudomonas putida KT2440 0.22 PP_3721 arginine:pyruvate transaminase AruH (EC 2.6.1.84) (from data) 0.39 PP_5076 L-glutamate synthase(NADPH) alpha subunit low > 96
Pseudomonas fluorescens GW456-L13 0.22 PfGW456L13_3206 Aspartate aminotransferase (EC 2.6.1.1) 0.40 PfGW456L13_272 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) 0.32 16
Pseudomonas aeruginosa PA14 0.21 IKLFDK_28660 Arginine--pyruvate transaminase AruH 0.39 IKLFDK_28355 glutamate synthase large subunit low > 100
Burkholderia phytofirmans PsJN 0.21 BPHYT_RS27000 aspartate aminotransferase 0.40 BPHYT_RS17855 glutamate synthase low > 109
Pseudomonas sp. SVBP6 0.21 COO64_RS20990 pyridoxal phosphate-dependent aminotransferase 0.39 COO64_RS13085 gltB glutamate synthase large subunit low > 93
Pseudomonas sp. DMC3 0.21 GFF2929 Arginine--pyruvate transaminase AruH 0.39 GFF3102 Glutamate synthase [NADPH] large chain low > 89
Mycobacterium tuberculosis H37Rv 0.17 Rv0337c Probable aspartate aminotransferase AspC (transaminase A) (ASPAT) 0.38 Rv3859c Probable ferredoxin-dependent glutamate synthase [NADPH] (large subunit) GltB (L-glutamate synthase) (L-glutamate synthetase) (NADH-glutamate synthase) (glutamate synthase (NADH))(NADPH-GOGAT) — —
Alteromonas macleodii MIT1002 0.16 MIT1002_02306 Glutamate-pyruvate aminotransferase AlaA 0.39 MIT1002_03139 Glutamate synthase [NADPH] large chain precursor 0.77 40
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.15 GFF1894 Aspartate aminotransferase (EC 2.6.1.1) 0.38 GFF2956 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) low > 78
Erwinia tracheiphila SCR3 0.14 LU632_RS07955 pyridoxal phosphate-dependent aminotransferase 0.39 LU632_RS21315 gltB glutamate synthase large subunit 0.64 54
Erwinia tracheiphila HP pepo 2.2 0.14 IJEDHG_18035 aspB aminotransferase 0.40 IJEDHG_13705 gltB glutamate synthase large subunit low > 61
Vibrio cholerae E7946 ATCC 55056 0.14 CSW01_09870 pyridoxal phosphate-dependent aminotransferase 0.39 CSW01_12020 glutamate synthase large subunit low > 62
Shewanella amazonensis SB2B 0.13 Sama_1697 aminotransferase AlaT (RefSeq) 0.39 Sama_0857 gltB glutamate synthase subunit alpha (RefSeq) low > 62
Shewanella sp. ANA-3 0.12 Shewana3_2145 aminotransferase AlaT (RefSeq) 0.39 Shewana3_3050 gltB glutamate synthase subunit alpha (RefSeq) low > 73
Shewanella oneidensis MR-1 0.12 SO2483 aspartate aminotransferase, putative (NCBI ptt file) 0.39 SO1325 gltB glutamate synthase, large subunit (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.12 Shew_1914 aminotransferase AlaT (RefSeq) 0.39 Shew_1032 gltB glutamate synthase subunit alpha (RefSeq) low > 60

Not shown: 9 genomes with orthologs for GFF403 only; 32 genomes with orthologs for GFF765 only